Wall clock time and date at job start Mon Mar 30 2020 02:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34489 * 126.82944 * 2 1 4 4 N 1.36448 * 108.85244 * 180.25378 * 3 2 1 5 5 H 0.97001 * 124.85113 * 179.77157 * 4 3 2 6 6 C 1.34658 * 110.29739 * 359.74826 * 4 3 2 7 7 C 1.36767 * 108.39870 * 359.97438 * 6 4 3 8 8 C 1.47263 * 126.94076 * 179.97438 * 7 6 4 9 9 O 1.21623 * 119.99889 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00345 * 0.03040 * 8 7 6 11 11 C 1.46497 * 120.00537 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47684 * 173.23472 * 11 10 8 13 13 H 1.08998 * 109.86704 * 57.33190 * 12 11 10 14 14 C 1.54319 * 109.88587 * 178.34577 * 12 11 10 15 15 C 1.55151 * 102.94550 * 141.61112 * 14 12 11 16 16 C 1.54912 * 101.58155 * 324.50194 * 15 14 12 17 17 N 1.47020 * 109.88283 * 296.15760 * 12 11 10 18 18 C 1.36937 * 125.64989 * 61.60103 * 17 12 11 19 19 H 1.07997 * 119.99898 * 324.44797 * 18 17 12 20 20 C 1.38810 * 120.00009 * 144.44484 * 18 17 12 21 21 N 1.31617 * 120.00047 * 162.69481 * 20 18 17 22 22 Si 1.86804 * 120.00109 * 342.69323 * 20 18 17 23 23 H 1.48503 * 109.47049 * 95.09573 * 22 20 18 24 24 H 1.48495 * 109.47161 * 215.10200 * 22 20 18 25 25 H 1.48502 * 109.46971 * 335.09940 * 22 20 18 26 26 H 1.09003 * 109.47515 * 270.14635 * 1 2 3 27 27 H 1.09000 * 109.47421 * 30.15260 * 1 2 3 28 28 H 1.09008 * 109.47217 * 150.15161 * 1 2 3 29 29 H 1.07997 * 125.57466 * 359.96082 * 3 2 1 30 30 H 1.08006 * 125.80173 * 180.02562 * 6 4 3 31 31 H 0.97007 * 119.99946 * 359.97438 * 10 8 7 32 32 H 1.09005 * 109.46931 * 53.23419 * 11 10 8 33 33 H 1.09005 * 109.47128 * 293.24037 * 11 10 8 34 34 H 1.08999 * 110.72370 * 259.98059 * 14 12 11 35 35 H 1.09000 * 110.71732 * 23.24901 * 14 12 11 36 36 H 1.08998 * 111.00582 * 82.57445 * 15 14 12 37 37 H 1.08998 * 111.00806 * 206.42439 * 15 14 12 38 38 H 1.09001 * 110.36398 * 278.17103 * 16 15 14 39 39 H 1.09000 * 110.36901 * 155.84884 * 16 15 14 40 40 H 0.97005 * 119.99801 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0765 0.0000 4 7 3.6110 0.6554 -0.0057 5 1 4.3839 1.2415 -0.0101 6 6 3.6655 -0.6901 -0.0039 7 6 2.3863 -1.1740 0.0037 8 6 1.9750 -2.5880 0.0075 9 8 0.7938 -2.8776 0.0139 10 7 2.9074 -3.5611 0.0041 11 6 2.4982 -4.9678 0.0085 12 6 3.7302 -5.8580 -0.1666 13 1 4.4521 -5.6508 0.6233 14 6 3.3150 -7.3436 -0.1217 15 6 4.2248 -7.9914 -1.1987 16 6 4.2996 -6.8660 -2.2605 17 7 4.3400 -5.6147 -1.4820 18 6 4.8589 -4.4230 -1.9131 19 1 4.3956 -3.4935 -1.6166 20 6 5.9803 -4.4096 -2.7310 21 7 6.2809 -3.3279 -3.4180 22 14 7.0628 -5.9267 -2.8568 23 1 6.6524 -6.7314 -4.0356 24 1 8.4805 -5.5120 -3.0098 25 1 6.9161 -6.7430 -1.6250 26 1 -0.3634 0.0026 1.0277 27 1 -0.3634 0.8886 -0.5162 28 1 -0.3634 -0.8914 -0.5115 29 1 1.9867 2.1059 -0.0006 30 1 4.5664 -1.2859 -0.0071 31 1 3.8495 -3.3301 -0.0013 32 1 1.8017 -5.1461 -0.8108 33 1 2.0123 -5.2019 0.9558 34 1 3.5160 -7.7708 0.8607 35 1 2.2636 -7.4582 -0.3854 36 1 5.2123 -8.2130 -0.7940 37 1 3.7634 -8.8883 -1.6118 38 1 3.4162 -6.8873 -2.8987 39 1 5.2042 -6.9693 -2.8598 40 1 7.0644 -3.3187 -3.9898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028315180.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:53 Heat of formation + Delta-G solvation = 33.765492 kcal Electronic energy + Delta-G solvation = -22009.040474 eV Core-core repulsion = 18825.179065 eV Total energy + Delta-G solvation = -3183.861409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.83254 -38.75111 -37.58701 -33.83074 -32.66305 -32.11296 -30.25787 -29.97269 -28.58656 -26.25575 -24.98594 -23.87895 -22.03616 -20.75145 -19.75022 -19.43386 -18.66503 -18.04419 -16.83263 -16.18889 -15.52640 -14.96133 -14.72474 -14.44692 -13.95277 -13.60153 -13.36456 -13.14464 -12.92096 -12.70738 -12.46782 -12.40326 -12.21204 -12.04066 -11.88468 -11.32874 -11.26693 -11.09848 -10.86652 -10.66336 -10.44811 -10.17018 -9.85031 -9.54956 -9.16286 -8.61642 -8.40781 -8.09550 -7.96486 -6.84932 -6.04061 -3.47921 2.21697 2.68744 3.28729 3.41928 3.47225 3.48699 4.00961 4.20774 4.48202 4.93774 5.14745 5.18317 5.33286 5.36993 5.44319 5.46891 5.54434 5.67755 5.83138 5.96330 5.99947 6.08852 6.14456 6.16732 6.17874 6.29389 6.32659 6.40826 6.46050 6.57306 6.60026 6.86250 6.91383 7.09984 7.20137 7.26055 7.70216 7.85683 8.27947 8.38204 8.77389 9.05379 9.60860 10.20723 11.10007 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.005959 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.857367 B = 4697.278463 C = 5865.611527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.114 4.114 3 C -0.035 4.035 4 N -0.551 5.551 5 H 0.415 0.585 6 C 0.060 3.940 7 C -0.224 4.224 8 C 0.585 3.415 9 O -0.564 6.564 10 N -0.709 5.709 11 C 0.119 3.881 12 C 0.143 3.857 13 H 0.047 0.953 14 C -0.121 4.121 15 C -0.136 4.136 16 C 0.118 3.882 17 N -0.601 5.601 18 C -0.253 4.253 19 H 0.093 0.907 20 C 0.033 3.967 21 N -0.903 5.903 22 Si 0.890 3.110 23 H -0.288 1.288 24 H -0.305 1.305 25 H -0.268 1.268 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.164 0.836 30 H 0.176 0.824 31 H 0.408 0.592 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.031 0.969 39 H 0.040 0.960 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.023 2.984 8.362 9.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C -0.163 4.163 4 N -0.145 5.145 5 H 0.251 0.749 6 C -0.077 4.077 7 C -0.234 4.234 8 C 0.374 3.626 9 O -0.445 6.445 10 N -0.361 5.361 11 C -0.007 4.007 12 C 0.036 3.964 13 H 0.065 0.935 14 C -0.160 4.160 15 C -0.174 4.174 16 C -0.006 4.006 17 N -0.327 5.327 18 C -0.381 4.381 19 H 0.110 0.890 20 C -0.168 4.168 21 N -0.545 5.545 22 Si 0.721 3.279 23 H -0.216 1.216 24 H -0.233 1.233 25 H -0.194 1.194 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.096 0.904 29 H 0.181 0.819 30 H 0.193 0.807 31 H 0.246 0.754 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.600 3.036 8.223 9.899 hybrid contribution 1.686 -0.396 -0.426 1.783 sum -2.914 2.640 7.796 8.732 Atomic orbital electron populations 1.20141 0.89716 1.02322 1.01453 1.20506 0.95406 0.90576 1.05567 1.21464 0.82694 0.98872 1.13238 1.41454 1.08068 1.06799 1.58216 0.74861 1.22106 0.99032 0.83622 1.02912 1.20420 0.92526 0.93050 1.17448 1.17381 0.85386 0.84135 0.75725 1.90660 1.17516 1.84017 1.52338 1.46019 1.10196 1.05888 1.74024 1.21850 0.98064 0.80676 1.00102 1.21281 0.92850 0.92237 0.89999 0.93527 1.22488 0.99633 0.95030 0.98812 1.22776 0.99575 0.97797 0.97284 1.21880 0.98591 0.86485 0.93665 1.44674 1.70414 1.08015 1.09631 1.18716 1.06331 0.83931 1.29093 0.89012 1.25425 0.96836 0.96397 0.98140 1.69811 1.27818 1.28670 1.28207 0.86696 0.79333 0.83640 0.78198 1.21643 1.23335 1.19360 0.92273 0.92815 0.90352 0.81878 0.80739 0.75405 0.91806 0.93125 0.91442 0.91223 0.91639 0.91580 0.95098 0.94248 0.92701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 9.97 36.00 0.36 -0.80 16 2 C -0.11 -1.84 6.35 -102.54 -0.65 -2.49 16 3 C -0.04 -0.46 11.82 -16.82 -0.20 -0.66 16 4 N -0.55 -6.86 5.90 -12.85 -0.08 -6.93 16 5 H 0.42 3.66 8.96 -40.82 -0.37 3.29 16 6 C 0.06 0.93 11.40 -16.84 -0.19 0.74 16 7 C -0.22 -4.08 6.29 -103.35 -0.65 -4.73 16 8 C 0.59 12.04 7.81 -12.60 -0.10 11.94 16 9 O -0.56 -12.90 15.30 5.26 0.08 -12.82 16 10 N -0.71 -13.88 4.33 -61.44 -0.27 -14.14 16 11 C 0.12 2.24 5.16 -4.04 -0.02 2.22 16 12 C 0.14 2.68 3.31 -66.96 -0.22 2.46 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 14 C -0.12 -1.87 6.48 -24.90 -0.16 -2.03 16 15 C -0.14 -2.27 7.08 -24.58 -0.17 -2.44 16 16 C 0.12 2.49 6.19 -2.53 -0.02 2.48 16 17 N -0.60 -13.65 2.68 -162.58 -0.44 -14.08 16 18 C -0.25 -6.59 9.51 -15.06 -0.14 -6.73 16 19 H 0.09 2.45 5.49 -52.49 -0.29 2.17 16 20 C 0.03 0.90 5.45 -17.43 -0.10 0.80 16 21 N -0.90 -26.26 13.97 55.49 0.78 -25.48 16 22 Si 0.89 21.80 24.78 -169.99 -4.21 17.59 16 23 H -0.29 -7.07 6.87 56.52 0.39 -6.69 16 24 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 25 H -0.27 -6.36 6.99 56.52 0.40 -5.97 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 1.35 6.86 -51.92 -0.36 0.99 16 29 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 30 H 0.18 2.56 7.45 -52.48 -0.39 2.17 16 31 H 0.41 7.90 5.25 -40.82 -0.21 7.68 16 32 H 0.06 1.33 8.11 -51.93 -0.42 0.91 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.01 7.85 -51.93 -0.41 0.60 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.04 0.90 3.18 -51.93 -0.17 0.74 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 319.42 15.07 4.81 4.81 Total: -1.00 -32.96 319.42 -7.15 -40.12 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -5.57 Total: 10.19 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -2.26 Total: 0.75 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.00 Total: -60.64 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.21 Total: 17.59 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.96 -7.15 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028315180.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.883 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds