Wall clock time and date at job start Mon Mar 30 2020 02:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34489 * 126.82944 * 2 1 4 4 N 1.36448 * 108.85244 * 180.25378 * 3 2 1 5 5 H 0.97001 * 124.85113 * 179.77157 * 4 3 2 6 6 C 1.34658 * 110.29739 * 359.74826 * 4 3 2 7 7 C 1.36767 * 108.39870 * 359.97438 * 6 4 3 8 8 C 1.47263 * 126.94076 * 179.97438 * 7 6 4 9 9 O 1.21623 * 119.99889 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00345 * 0.03040 * 8 7 6 11 11 C 1.46497 * 120.00537 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47684 * 173.23472 * 11 10 8 13 13 H 1.08998 * 109.86704 * 57.33190 * 12 11 10 14 14 C 1.54319 * 109.88587 * 178.34577 * 12 11 10 15 15 C 1.55151 * 102.94550 * 141.61112 * 14 12 11 16 16 C 1.54912 * 101.58155 * 324.50194 * 15 14 12 17 17 N 1.47020 * 109.88283 * 296.15760 * 12 11 10 18 18 C 1.36937 * 125.64989 * 61.60103 * 17 12 11 19 19 H 1.07997 * 119.99898 * 324.44797 * 18 17 12 20 20 C 1.38810 * 120.00009 * 144.44484 * 18 17 12 21 21 N 1.31617 * 120.00047 * 162.69481 * 20 18 17 22 22 Si 1.86804 * 120.00109 * 342.69323 * 20 18 17 23 23 H 1.48503 * 109.47049 * 95.09573 * 22 20 18 24 24 H 1.48495 * 109.47161 * 215.10200 * 22 20 18 25 25 H 1.48502 * 109.46971 * 335.09940 * 22 20 18 26 26 H 1.09003 * 109.47515 * 270.14635 * 1 2 3 27 27 H 1.09000 * 109.47421 * 30.15260 * 1 2 3 28 28 H 1.09008 * 109.47217 * 150.15161 * 1 2 3 29 29 H 1.07997 * 125.57466 * 359.96082 * 3 2 1 30 30 H 1.08006 * 125.80173 * 180.02562 * 6 4 3 31 31 H 0.97007 * 119.99946 * 359.97438 * 10 8 7 32 32 H 1.09005 * 109.46931 * 53.23419 * 11 10 8 33 33 H 1.09005 * 109.47128 * 293.24037 * 11 10 8 34 34 H 1.08999 * 110.72370 * 259.98059 * 14 12 11 35 35 H 1.09000 * 110.71732 * 23.24901 * 14 12 11 36 36 H 1.08998 * 111.00582 * 82.57445 * 15 14 12 37 37 H 1.08998 * 111.00806 * 206.42439 * 15 14 12 38 38 H 1.09001 * 110.36398 * 278.17103 * 16 15 14 39 39 H 1.09000 * 110.36901 * 155.84884 * 16 15 14 40 40 H 0.97005 * 119.99801 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0765 0.0000 4 7 3.6110 0.6554 -0.0057 5 1 4.3839 1.2415 -0.0101 6 6 3.6655 -0.6901 -0.0039 7 6 2.3863 -1.1740 0.0037 8 6 1.9750 -2.5880 0.0075 9 8 0.7938 -2.8776 0.0139 10 7 2.9074 -3.5611 0.0041 11 6 2.4982 -4.9678 0.0085 12 6 3.7302 -5.8580 -0.1666 13 1 4.4521 -5.6508 0.6233 14 6 3.3150 -7.3436 -0.1217 15 6 4.2248 -7.9914 -1.1987 16 6 4.2996 -6.8660 -2.2605 17 7 4.3400 -5.6147 -1.4820 18 6 4.8589 -4.4230 -1.9131 19 1 4.3956 -3.4935 -1.6166 20 6 5.9803 -4.4096 -2.7310 21 7 6.2809 -3.3279 -3.4180 22 14 7.0628 -5.9267 -2.8568 23 1 6.6524 -6.7314 -4.0356 24 1 8.4805 -5.5120 -3.0098 25 1 6.9161 -6.7430 -1.6250 26 1 -0.3634 0.0026 1.0277 27 1 -0.3634 0.8886 -0.5162 28 1 -0.3634 -0.8914 -0.5115 29 1 1.9867 2.1059 -0.0006 30 1 4.5664 -1.2859 -0.0071 31 1 3.8495 -3.3301 -0.0013 32 1 1.8017 -5.1461 -0.8108 33 1 2.0123 -5.2019 0.9558 34 1 3.5160 -7.7708 0.8607 35 1 2.2636 -7.4582 -0.3854 36 1 5.2123 -8.2130 -0.7940 37 1 3.7634 -8.8883 -1.6118 38 1 3.4162 -6.8873 -2.8987 39 1 5.2042 -6.9693 -2.8598 40 1 7.0644 -3.3187 -3.9898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028315180.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:53 Heat of formation + Delta-G solvation = 10.945812 kcal Electronic energy + Delta-G solvation = -22010.030010 eV Core-core repulsion = 18825.179065 eV Total energy + Delta-G solvation = -3184.850945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.02043 -40.30002 -39.16637 -35.41246 -34.60525 -33.28021 -31.75417 -31.64716 -29.97111 -27.38138 -26.60366 -25.61300 -23.52147 -22.18690 -21.35020 -20.66314 -20.12644 -19.25119 -18.56530 -17.88736 -17.04489 -16.58339 -16.29380 -15.93425 -15.40323 -14.97737 -14.79292 -14.74566 -14.40850 -14.13923 -13.95782 -13.78450 -13.55809 -13.52493 -13.23240 -13.03016 -12.92716 -12.59042 -12.29397 -12.22985 -12.00249 -11.71039 -11.50157 -11.35782 -10.75071 -10.65492 -9.92654 -9.43921 -9.12194 -8.72400 -8.13158 -5.53269 0.85955 1.32627 1.41604 1.52859 1.55449 2.37754 2.45565 2.60352 2.72014 3.08426 3.38783 3.93312 4.02629 4.04451 4.11014 4.19967 4.32761 4.35250 4.50908 4.53318 4.68868 4.73298 4.79428 4.91328 4.94746 4.98546 5.01032 5.01883 5.16331 5.19234 5.33231 5.38716 5.50109 5.70509 5.89385 5.92923 6.01481 6.24874 6.72110 6.82041 6.85613 7.48078 7.59013 8.25549 9.03824 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.005959 C = 0.004772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.857367 B = 4697.278463 C = 5865.611527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.152 4.152 3 C -0.007 4.007 4 N -0.533 5.533 5 H 0.435 0.565 6 C 0.061 3.939 7 C -0.266 4.266 8 C 0.576 3.424 9 O -0.598 6.598 10 N -0.709 5.709 11 C 0.123 3.877 12 C 0.141 3.859 13 H 0.053 0.947 14 C -0.111 4.111 15 C -0.125 4.125 16 C 0.104 3.896 17 N -0.617 5.617 18 C -0.237 4.237 19 H 0.077 0.923 20 C -0.023 4.023 21 N -0.947 5.947 22 Si 0.946 3.054 23 H -0.292 1.292 24 H -0.314 1.314 25 H -0.253 1.253 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.209 0.791 30 H 0.177 0.823 31 H 0.407 0.593 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.026 0.974 39 H 0.022 0.978 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.912 2.667 9.806 10.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.159 4.159 3 C -0.135 4.135 4 N -0.129 5.129 5 H 0.275 0.725 6 C -0.078 4.078 7 C -0.277 4.277 8 C 0.366 3.634 9 O -0.482 6.482 10 N -0.361 5.361 11 C -0.003 4.003 12 C 0.035 3.965 13 H 0.070 0.930 14 C -0.149 4.149 15 C -0.163 4.163 16 C -0.020 4.020 17 N -0.344 5.344 18 C -0.366 4.366 19 H 0.094 0.906 20 C -0.219 4.219 21 N -0.593 5.593 22 Si 0.777 3.223 23 H -0.220 1.220 24 H -0.244 1.244 25 H -0.177 1.177 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.226 0.774 30 H 0.194 0.806 31 H 0.245 0.755 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.478 2.699 9.698 11.018 hybrid contribution 1.569 -0.222 -0.861 1.803 sum -2.909 2.477 8.838 9.628 Atomic orbital electron populations 1.20075 0.89289 1.01948 1.01708 1.20839 0.96276 0.90886 1.07858 1.22060 0.81944 0.99963 1.09579 1.41495 1.09063 1.05917 1.56381 0.72469 1.22072 0.98172 0.85065 1.02450 1.20527 0.94414 0.92473 1.20258 1.17871 0.85039 0.85414 0.75050 1.90621 1.18699 1.84724 1.54128 1.46070 1.10032 1.06246 1.73714 1.21840 0.97853 0.80529 1.00060 1.21489 0.92308 0.94723 0.88019 0.92955 1.22522 1.00000 0.92001 1.00376 1.22745 1.00369 0.97231 0.95935 1.22057 0.97422 0.87547 0.94936 1.44849 1.70177 1.07596 1.11741 1.18800 1.05393 0.85040 1.27348 0.90624 1.25972 0.98423 0.98665 0.98836 1.69927 1.28585 1.30728 1.30022 0.85790 0.77097 0.80931 0.78492 1.22050 1.24361 1.17692 0.91750 0.89934 0.93832 0.77398 0.80589 0.75456 0.94323 0.91151 0.87975 0.90108 0.91462 0.88362 0.95650 0.96032 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.13 9.97 71.23 0.71 -1.42 16 2 C -0.15 -4.83 6.35 -18.52 -0.12 -4.95 16 3 C -0.01 -0.17 11.82 83.12 0.98 0.81 16 4 N -0.53 -12.13 5.90 -194.55 -1.15 -13.28 16 5 H 0.44 6.44 8.96 -92.71 -0.83 5.61 16 6 C 0.06 1.87 11.40 83.91 0.96 2.83 16 7 C -0.27 -9.87 6.29 -19.04 -0.12 -9.99 16 8 C 0.58 24.58 7.81 86.62 0.68 25.26 16 9 O -0.60 -28.53 15.30 -4.10 -0.06 -28.60 16 10 N -0.71 -28.43 4.33 -466.53 -2.02 -30.45 16 11 C 0.12 4.60 5.16 86.38 0.45 5.05 16 12 C 0.14 5.04 3.31 45.34 0.15 5.19 16 13 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 14 C -0.11 -3.02 6.48 31.78 0.21 -2.81 16 15 C -0.12 -3.71 7.08 31.98 0.23 -3.48 16 16 C 0.10 4.26 6.19 86.86 0.54 4.80 16 17 N -0.62 -27.65 2.68 -668.27 -1.79 -29.44 16 18 C -0.24 -12.50 9.51 84.03 0.80 -11.70 16 19 H 0.08 4.18 5.49 -2.91 -0.02 4.17 16 20 C -0.02 -1.27 5.45 84.86 0.46 -0.81 16 21 N -0.95 -56.61 13.97 21.65 0.30 -56.30 16 22 Si 0.95 45.46 24.78 68.60 1.70 47.16 16 23 H -0.29 -14.04 6.87 99.48 0.68 -13.36 16 24 H -0.31 -15.41 7.11 99.48 0.71 -14.71 16 25 H -0.25 -11.31 6.99 99.48 0.70 -10.61 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.04 1.56 6.86 -2.38 -0.02 1.54 16 29 H 0.21 2.86 8.06 -2.91 -0.02 2.84 16 30 H 0.18 5.26 7.45 -2.91 -0.02 5.24 16 31 H 0.41 16.21 5.25 -92.70 -0.49 15.73 16 32 H 0.04 1.63 8.11 -2.38 -0.02 1.62 16 33 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 34 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.08 2.06 7.85 -2.39 -0.02 2.04 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.02 0.97 3.18 -2.39 -0.01 0.96 16 40 H 0.26 14.93 8.31 -92.70 -0.77 14.16 16 Total: -1.00 -74.35 319.42 2.62 -71.73 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -0.28 Total: 30.39 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 5.92 Total: 8.78 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -4.66 Total: -129.47 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.06 Total: -28.60 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.70 Total: 47.16 kcal Total: -74.35 2.62 -71.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028315180.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.679 kcal (2) G-P(sol) polarization free energy of solvation -74.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds