Wall clock time and date at job start Mon Mar 30 2020 02:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34490 * 126.83486 * 2 1 4 4 N 1.36446 * 108.85498 * 180.26954 * 3 2 1 5 5 H 0.97004 * 124.84724 * 179.69458 * 4 3 2 6 6 C 1.34656 * 110.29905 * 359.71343 * 4 3 2 7 7 C 1.36765 * 108.39650 * 0.02562 * 6 4 3 8 8 C 1.47264 * 126.94163 * 179.97438 * 7 6 4 9 9 O 1.21628 * 120.00103 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00078 * 0.02647 * 8 7 6 11 11 C 1.46500 * 120.00266 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47479 * 184.66200 * 11 10 8 13 13 H 1.09003 * 109.99808 * 54.40555 * 12 11 10 14 14 C 1.54322 * 109.88159 * 293.31179 * 12 11 10 15 15 C 1.55280 * 103.00693 * 218.46756 * 14 12 11 16 16 C 1.54911 * 101.52761 * 35.36011 * 15 14 12 17 17 N 1.47019 * 109.88241 * 175.50089 * 12 11 10 18 18 C 1.36933 * 125.65189 * 298.33224 * 17 12 11 19 19 H 1.08004 * 119.99871 * 346.29954 * 18 17 12 20 20 C 1.38813 * 120.00231 * 166.29081 * 18 17 12 21 21 N 1.31625 * 119.99899 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00141 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46887 * 90.00599 * 22 20 18 24 24 H 1.48494 * 109.47288 * 210.00611 * 22 20 18 25 25 H 1.48500 * 109.47282 * 330.00632 * 22 20 18 26 26 H 1.08998 * 109.46913 * 270.19774 * 1 2 3 27 27 H 1.09008 * 109.46968 * 30.19458 * 1 2 3 28 28 H 1.08999 * 109.47604 * 150.19767 * 1 2 3 29 29 H 1.08005 * 125.57165 * 359.97438 * 3 2 1 30 30 H 1.08001 * 125.80070 * 180.02562 * 6 4 3 31 31 H 0.97002 * 119.99926 * 0.02562 * 10 8 7 32 32 H 1.09002 * 109.46997 * 64.65685 * 11 10 8 33 33 H 1.09000 * 109.47147 * 304.66068 * 11 10 8 34 34 H 1.08999 * 110.72020 * 336.74994 * 14 12 11 35 35 H 1.09002 * 110.72347 * 100.02645 * 14 12 11 36 36 H 1.08997 * 110.95433 * 277.33395 * 15 14 12 37 37 H 1.09005 * 111.09600 * 153.44788 * 15 14 12 38 38 H 1.08995 * 110.36280 * 204.23556 * 16 15 14 39 39 H 1.09003 * 110.36701 * 82.02321 * 16 15 14 40 40 H 0.96998 * 119.99971 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6552 -0.0061 5 1 4.3840 1.2414 -0.0116 6 6 3.6656 -0.6902 -0.0038 7 6 2.3864 -1.1740 0.0034 8 6 1.9749 -2.5880 0.0076 9 8 0.7936 -2.8776 0.0135 10 7 2.9073 -3.5611 0.0049 11 6 2.4980 -4.9678 0.0096 12 6 3.7365 -5.8590 0.1225 13 1 4.3246 -5.5712 0.9940 14 6 4.5934 -5.7309 -1.1545 15 6 5.0929 -7.1827 -1.3872 16 6 3.8704 -8.0098 -0.9172 17 7 3.3303 -7.2674 0.2363 18 6 2.5758 -7.8013 1.2466 19 1 2.4126 -7.2387 2.1540 20 6 2.0207 -9.0657 1.1046 21 7 2.2199 -9.7515 -0.0010 22 14 0.9909 -9.7937 2.4826 23 1 -0.4327 -9.4186 2.2878 24 1 1.1194 -11.2730 2.4681 25 1 1.4672 -9.2683 3.7873 26 1 -0.3633 0.0035 1.0276 27 1 -0.3633 0.8883 -0.5169 28 1 -0.3634 -0.8917 -0.5107 29 1 1.9868 2.1059 -0.0004 30 1 4.5664 -1.2860 -0.0070 31 1 3.8494 -3.3302 0.0006 32 1 1.9696 -5.1955 -0.9161 33 1 1.8395 -5.1517 0.8585 34 1 3.9857 -5.3948 -1.9946 35 1 5.4328 -5.0554 -0.9897 36 1 5.9685 -7.3966 -0.7742 37 1 5.3032 -7.3609 -2.4418 38 1 4.1827 -9.0088 -0.6129 39 1 3.1260 -8.0712 -1.7111 40 1 1.8323 -10.6351 -0.1001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028315181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:56 Heat of formation + Delta-G solvation = 26.012699 kcal Electronic energy + Delta-G solvation = -21356.957348 eV Core-core repulsion = 18172.759753 eV Total energy + Delta-G solvation = -3184.197595 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21122 -38.83257 -37.43961 -34.10307 -32.45991 -32.41323 -30.43151 -29.40983 -28.23067 -26.56945 -24.90957 -24.01621 -22.28533 -20.29095 -19.82293 -19.66369 -18.90855 -18.37125 -16.76043 -15.95331 -15.60225 -14.96963 -14.67324 -14.21621 -14.09918 -13.91005 -13.74219 -13.41218 -12.85187 -12.80351 -12.64430 -12.32417 -12.04700 -11.83979 -11.70017 -11.38015 -11.28060 -10.90055 -10.75943 -10.16339 -10.07212 -9.85845 -9.80747 -9.67596 -9.41600 -8.75069 -8.57483 -8.40694 -8.34028 -6.80169 -5.72496 -3.08774 1.80397 2.36047 3.08395 3.43854 3.49808 3.50296 3.71281 3.85834 4.53359 4.75052 4.94736 5.08540 5.35335 5.38983 5.44327 5.49875 5.63784 5.67567 5.77540 5.84909 5.89937 6.06677 6.13022 6.21434 6.27345 6.28618 6.50197 6.60368 6.66846 6.76021 6.82452 6.84040 6.91728 7.14654 7.31280 7.55732 7.64366 7.83122 8.02598 8.29899 8.76003 9.21774 9.82346 10.49321 11.39374 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022345 B = 0.004168 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.755630 B = 6716.754882 C = 7609.340846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.110 4.110 3 C -0.031 4.031 4 N -0.552 5.552 5 H 0.415 0.585 6 C 0.042 3.958 7 C -0.219 4.219 8 C 0.580 3.420 9 O -0.544 6.544 10 N -0.724 5.724 11 C 0.112 3.888 12 C 0.152 3.848 13 H 0.037 0.963 14 C -0.127 4.127 15 C -0.148 4.148 16 C 0.171 3.829 17 N -0.589 5.589 18 C -0.232 4.232 19 H 0.076 0.924 20 C -0.002 4.002 21 N -0.917 5.917 22 Si 0.911 3.089 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.280 1.280 26 H 0.063 0.937 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.167 0.833 30 H 0.171 0.829 31 H 0.391 0.609 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.025 0.975 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.770 20.265 -2.154 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C -0.159 4.159 4 N -0.147 5.147 5 H 0.252 0.748 6 C -0.094 4.094 7 C -0.230 4.230 8 C 0.367 3.633 9 O -0.423 6.423 10 N -0.374 5.374 11 C -0.014 4.014 12 C 0.043 3.957 13 H 0.054 0.946 14 C -0.165 4.165 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.314 5.314 18 C -0.360 4.360 19 H 0.094 0.906 20 C -0.199 4.199 21 N -0.563 5.563 22 Si 0.741 3.259 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.206 1.206 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.184 0.816 30 H 0.188 0.812 31 H 0.223 0.777 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.043 0.957 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.880 19.877 -2.103 20.835 hybrid contribution 0.280 0.002 0.660 0.717 sum 6.160 19.880 -1.443 20.862 Atomic orbital electron populations 1.20194 0.89396 1.02535 1.01959 1.20592 0.95685 0.90450 1.04928 1.21537 0.82503 0.99087 1.12738 1.41448 1.08181 1.06662 1.58366 0.74848 1.21922 0.98625 0.83775 1.05121 1.20560 0.92578 0.93259 1.16599 1.17433 0.85680 0.83888 0.76290 1.90749 1.17280 1.83726 1.50513 1.45974 1.08874 1.07127 1.75465 1.22173 0.99452 0.77387 1.02339 1.21125 0.92352 0.86885 0.95289 0.94561 1.22641 0.98463 0.97475 0.97907 1.23025 1.00120 0.95856 0.99717 1.21465 0.89992 0.95103 0.88764 1.44487 1.60843 1.00702 1.25358 1.19000 1.23611 0.99572 0.93852 0.90616 1.24891 0.99722 0.97936 0.97341 1.69939 1.48069 1.12686 1.25622 0.86144 0.80544 0.78095 0.81150 1.21372 1.21693 1.20593 0.91872 0.92594 0.90157 0.81605 0.81161 0.77657 0.92117 0.91193 0.91770 0.92509 0.92363 0.92359 0.90813 0.95697 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 9.97 36.00 0.36 -0.69 16 2 C -0.11 -1.41 6.35 -102.54 -0.65 -2.06 16 3 C -0.03 -0.29 11.82 -16.82 -0.20 -0.49 16 4 N -0.55 -4.14 5.90 -12.85 -0.08 -4.22 16 5 H 0.42 1.53 8.96 -40.82 -0.37 1.16 16 6 C 0.04 0.40 11.40 -16.85 -0.19 0.21 16 7 C -0.22 -3.06 6.29 -103.35 -0.65 -3.71 16 8 C 0.58 10.18 7.81 -12.59 -0.10 10.09 16 9 O -0.54 -11.82 15.32 5.25 0.08 -11.74 16 10 N -0.72 -11.60 5.39 -61.44 -0.33 -11.94 16 11 C 0.11 2.24 5.09 -4.04 -0.02 2.22 16 12 C 0.15 3.05 3.22 -66.96 -0.22 2.83 16 13 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 14 C -0.13 -2.11 6.07 -24.83 -0.15 -2.26 16 15 C -0.15 -2.72 7.10 -24.51 -0.17 -2.90 16 16 C 0.17 4.13 5.42 -2.53 -0.01 4.11 16 17 N -0.59 -14.85 3.13 -162.57 -0.51 -15.35 16 18 C -0.23 -6.46 9.73 -15.06 -0.15 -6.61 16 19 H 0.08 2.07 7.83 -52.48 -0.41 1.66 16 20 C 0.00 -0.05 5.47 -17.43 -0.10 -0.15 16 21 N -0.92 -26.96 10.54 55.49 0.58 -26.38 16 22 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.08 1.22 6.86 -51.93 -0.36 0.86 16 29 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 30 H 0.17 1.11 7.45 -52.49 -0.39 0.72 16 31 H 0.39 4.86 7.19 -40.82 -0.29 4.57 16 32 H 0.06 1.34 8.04 -51.93 -0.42 0.93 16 33 H 0.07 1.62 7.86 -51.93 -0.41 1.21 16 34 H 0.06 1.06 7.78 -51.93 -0.40 0.66 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.97 6.86 -51.93 -0.36 1.61 16 39 H 0.02 0.65 8.08 -51.93 -0.42 0.23 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 329.03 15.07 4.96 4.96 Total: -1.00 -34.68 329.03 -8.48 -43.16 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -5.92 Total: 3.48 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.25 Total: 0.59 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: -0.33 Total: -57.89 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.68 -8.48 -43.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028315181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.176 kcal (2) G-P(sol) polarization free energy of solvation -34.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds