Wall clock time and date at job start Mon Mar 30 2020 02:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34490 * 126.83486 * 2 1 4 4 N 1.36446 * 108.85498 * 180.26954 * 3 2 1 5 5 H 0.97004 * 124.84724 * 179.69458 * 4 3 2 6 6 C 1.34656 * 110.29905 * 359.71343 * 4 3 2 7 7 C 1.36765 * 108.39650 * 0.02562 * 6 4 3 8 8 C 1.47264 * 126.94163 * 179.97438 * 7 6 4 9 9 O 1.21628 * 120.00103 * 180.02562 * 8 7 6 10 10 N 1.34771 * 120.00078 * 0.02647 * 8 7 6 11 11 C 1.46500 * 120.00266 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47479 * 184.66200 * 11 10 8 13 13 H 1.09003 * 109.99808 * 54.40555 * 12 11 10 14 14 C 1.54322 * 109.88159 * 293.31179 * 12 11 10 15 15 C 1.55280 * 103.00693 * 218.46756 * 14 12 11 16 16 C 1.54911 * 101.52761 * 35.36011 * 15 14 12 17 17 N 1.47019 * 109.88241 * 175.50089 * 12 11 10 18 18 C 1.36933 * 125.65189 * 298.33224 * 17 12 11 19 19 H 1.08004 * 119.99871 * 346.29954 * 18 17 12 20 20 C 1.38813 * 120.00231 * 166.29081 * 18 17 12 21 21 N 1.31625 * 119.99899 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00141 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46887 * 90.00599 * 22 20 18 24 24 H 1.48494 * 109.47288 * 210.00611 * 22 20 18 25 25 H 1.48500 * 109.47282 * 330.00632 * 22 20 18 26 26 H 1.08998 * 109.46913 * 270.19774 * 1 2 3 27 27 H 1.09008 * 109.46968 * 30.19458 * 1 2 3 28 28 H 1.08999 * 109.47604 * 150.19767 * 1 2 3 29 29 H 1.08005 * 125.57165 * 359.97438 * 3 2 1 30 30 H 1.08001 * 125.80070 * 180.02562 * 6 4 3 31 31 H 0.97002 * 119.99926 * 0.02562 * 10 8 7 32 32 H 1.09002 * 109.46997 * 64.65685 * 11 10 8 33 33 H 1.09000 * 109.47147 * 304.66068 * 11 10 8 34 34 H 1.08999 * 110.72020 * 336.74994 * 14 12 11 35 35 H 1.09002 * 110.72347 * 100.02645 * 14 12 11 36 36 H 1.08997 * 110.95433 * 277.33395 * 15 14 12 37 37 H 1.09005 * 111.09600 * 153.44788 * 15 14 12 38 38 H 1.08995 * 110.36280 * 204.23556 * 16 15 14 39 39 H 1.09003 * 110.36701 * 82.02321 * 16 15 14 40 40 H 0.96998 * 119.99971 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.0764 0.0000 4 7 3.6111 0.6552 -0.0061 5 1 4.3840 1.2414 -0.0116 6 6 3.6656 -0.6902 -0.0038 7 6 2.3864 -1.1740 0.0034 8 6 1.9749 -2.5880 0.0076 9 8 0.7936 -2.8776 0.0135 10 7 2.9073 -3.5611 0.0049 11 6 2.4980 -4.9678 0.0096 12 6 3.7365 -5.8590 0.1225 13 1 4.3246 -5.5712 0.9940 14 6 4.5934 -5.7309 -1.1545 15 6 5.0929 -7.1827 -1.3872 16 6 3.8704 -8.0098 -0.9172 17 7 3.3303 -7.2674 0.2363 18 6 2.5758 -7.8013 1.2466 19 1 2.4126 -7.2387 2.1540 20 6 2.0207 -9.0657 1.1046 21 7 2.2199 -9.7515 -0.0010 22 14 0.9909 -9.7937 2.4826 23 1 -0.4327 -9.4186 2.2878 24 1 1.1194 -11.2730 2.4681 25 1 1.4672 -9.2683 3.7873 26 1 -0.3633 0.0035 1.0276 27 1 -0.3633 0.8883 -0.5169 28 1 -0.3634 -0.8917 -0.5107 29 1 1.9868 2.1059 -0.0004 30 1 4.5664 -1.2860 -0.0070 31 1 3.8494 -3.3302 0.0006 32 1 1.9696 -5.1955 -0.9161 33 1 1.8395 -5.1517 0.8585 34 1 3.9857 -5.3948 -1.9946 35 1 5.4328 -5.0554 -0.9897 36 1 5.9685 -7.3966 -0.7742 37 1 5.3032 -7.3609 -2.4418 38 1 4.1827 -9.0088 -0.6129 39 1 3.1260 -8.0712 -1.7111 40 1 1.8323 -10.6351 -0.1001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028315181.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:55 Heat of formation + Delta-G solvation = 0.849236 kcal Electronic energy + Delta-G solvation = -21358.048518 eV Core-core repulsion = 18172.759753 eV Total energy + Delta-G solvation = -3185.288765 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.03557 -40.26036 -39.08509 -35.68326 -34.39275 -33.29948 -31.72458 -31.13532 -29.66848 -27.42090 -26.72777 -25.71673 -23.50312 -21.99543 -21.21966 -20.81356 -20.14641 -19.16792 -18.65634 -17.28718 -17.13707 -16.54630 -16.24250 -15.75151 -15.57184 -15.18443 -14.77001 -14.49752 -14.32574 -13.98342 -13.88990 -13.63817 -13.57332 -13.37314 -13.24717 -12.99812 -12.84576 -12.70114 -12.28392 -12.00897 -11.85534 -11.66406 -11.45403 -11.37842 -10.87070 -10.68882 -10.08494 -9.48055 -9.13338 -8.85761 -7.88405 -5.25638 0.84606 1.42973 1.46463 1.53557 1.53919 2.26631 2.48004 2.56722 2.63859 3.31148 3.75190 3.95096 4.02227 4.05061 4.14007 4.28577 4.35659 4.45329 4.50972 4.58741 4.73463 4.77264 4.90957 4.95775 4.99871 5.03028 5.16729 5.18156 5.24646 5.35553 5.44921 5.47963 5.62414 5.68472 5.79381 5.86362 6.00624 6.23786 6.73293 6.82007 7.09706 7.46382 7.76892 8.42047 9.22215 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.022345 B = 0.004168 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.755630 B = 6716.754882 C = 7609.340846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.156 4.156 3 C -0.006 4.006 4 N -0.530 5.530 5 H 0.440 0.560 6 C 0.074 3.926 7 C -0.271 4.271 8 C 0.574 3.426 9 O -0.602 6.602 10 N -0.706 5.706 11 C 0.132 3.868 12 C 0.149 3.851 13 H 0.052 0.948 14 C -0.113 4.113 15 C -0.132 4.132 16 C 0.172 3.828 17 N -0.612 5.612 18 C -0.240 4.240 19 H 0.074 0.926 20 C -0.059 4.059 21 N -0.945 5.945 22 Si 0.971 3.029 23 H -0.292 1.292 24 H -0.289 1.289 25 H -0.268 1.268 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.040 0.960 29 H 0.203 0.797 30 H 0.209 0.791 31 H 0.413 0.587 32 H 0.030 0.970 33 H 0.028 0.972 34 H 0.064 0.936 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.038 0.962 39 H -0.011 1.011 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.961 23.701 -2.030 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.162 4.162 3 C -0.134 4.134 4 N -0.126 5.126 5 H 0.281 0.719 6 C -0.064 4.064 7 C -0.282 4.282 8 C 0.364 3.636 9 O -0.485 6.485 10 N -0.358 5.358 11 C 0.006 3.994 12 C 0.042 3.958 13 H 0.069 0.931 14 C -0.150 4.150 15 C -0.171 4.171 16 C 0.047 3.953 17 N -0.337 5.337 18 C -0.369 4.369 19 H 0.092 0.908 20 C -0.253 4.253 21 N -0.594 5.594 22 Si 0.799 3.201 23 H -0.219 1.219 24 H -0.215 1.215 25 H -0.192 1.192 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.220 0.780 30 H 0.226 0.774 31 H 0.250 0.750 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.056 0.944 39 H 0.007 0.993 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.154 23.391 -1.974 25.196 hybrid contribution -0.685 -0.936 0.622 1.316 sum 8.469 22.455 -1.352 24.037 Atomic orbital electron populations 1.20092 0.90418 1.01865 1.01319 1.20807 0.95852 0.91637 1.07889 1.21942 0.82403 0.99613 1.09485 1.41509 1.08690 1.06320 1.56063 0.71937 1.22321 0.97995 0.84753 1.01371 1.20372 0.95169 0.91165 1.21455 1.18118 0.84936 0.85663 0.74844 1.90716 1.19770 1.84781 1.53211 1.45623 1.09997 1.05024 1.75177 1.21618 0.98748 0.80100 0.98970 1.21345 0.92455 0.84050 0.97989 0.93055 1.22639 0.99273 0.97417 0.95692 1.22888 0.97459 0.95424 1.01293 1.21297 0.91654 0.94830 0.87539 1.44770 1.60636 1.03370 1.24894 1.19296 1.23347 0.99617 0.94686 0.90808 1.25653 1.01320 0.98645 0.99654 1.70141 1.49206 1.12667 1.27338 0.85199 0.78506 0.77216 0.79182 1.21948 1.21526 1.19235 0.92623 0.89880 0.94075 0.77976 0.77420 0.75022 0.95108 0.95366 0.91696 0.87208 0.90963 0.89816 0.94367 0.99283 0.94300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.05 9.97 71.24 0.71 -1.34 16 2 C -0.16 -3.80 6.35 -18.51 -0.12 -3.92 16 3 C -0.01 -0.09 11.82 83.12 0.98 0.89 16 4 N -0.53 -5.16 5.90 -194.56 -1.15 -6.31 16 5 H 0.44 0.47 8.96 -92.71 -0.83 -0.36 16 6 C 0.07 1.10 11.40 83.91 0.96 2.06 16 7 C -0.27 -7.19 6.29 -19.04 -0.12 -7.31 16 8 C 0.57 20.58 7.81 86.62 0.68 21.25 16 9 O -0.60 -28.07 15.32 -4.12 -0.06 -28.14 16 10 N -0.71 -22.18 5.39 -466.53 -2.52 -24.69 16 11 C 0.13 5.48 5.09 86.38 0.44 5.92 16 12 C 0.15 5.84 3.22 45.34 0.15 5.99 16 13 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 14 C -0.11 -3.38 6.07 31.83 0.19 -3.18 16 15 C -0.13 -4.54 7.10 32.03 0.23 -4.31 16 16 C 0.17 8.48 5.42 86.86 0.47 8.95 16 17 N -0.61 -31.56 3.13 -668.26 -2.09 -33.65 16 18 C -0.24 -13.83 9.73 84.03 0.82 -13.01 16 19 H 0.07 4.16 7.83 -2.91 -0.02 4.14 16 20 C -0.06 -3.47 5.47 84.86 0.46 -3.00 16 21 N -0.95 -58.18 10.54 21.65 0.23 -57.96 16 22 Si 0.97 47.69 29.55 68.60 2.03 49.72 16 23 H -0.29 -14.49 7.11 99.48 0.71 -13.79 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 28 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 29 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 30 H 0.21 1.39 7.45 -2.91 -0.02 1.37 16 31 H 0.41 8.95 7.19 -92.71 -0.67 8.28 16 32 H 0.03 1.44 8.04 -2.39 -0.02 1.42 16 33 H 0.03 1.38 7.86 -2.39 -0.02 1.37 16 34 H 0.06 1.98 7.78 -2.39 -0.02 1.96 16 35 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.08 2.48 8.14 -2.38 -0.02 2.46 16 38 H 0.04 2.12 6.86 -2.39 -0.02 2.11 16 39 H -0.01 -0.60 8.08 -2.39 -0.02 -0.62 16 40 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 Total: -1.00 -84.53 329.03 1.85 -82.68 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -0.44 Total: 9.35 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 5.85 Total: 8.99 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -5.53 Total: -122.61 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.06 Total: -28.14 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -84.53 1.85 -82.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028315181.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.530 kcal (2) G-P(sol) polarization free energy of solvation -84.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds