Wall clock time and date at job start Mon Mar 30 2020 01:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.34659 * 125.80189 * 2 1 4 4 H 0.97001 * 124.85322 * 0.02562 * 3 2 1 5 5 C 1.36447 * 110.29687 * 179.73658 * 3 2 1 6 6 C 1.34483 * 108.85936 * 0.27372 * 5 3 2 7 7 C 1.36772 * 125.80197 * 180.20487 * 2 1 3 8 8 C 1.47261 * 126.94219 * 359.97438 * 7 2 1 9 9 O 1.21623 * 120.00005 * 0.27692 * 8 7 2 10 10 N 1.34779 * 119.99733 * 180.28345 * 8 7 2 11 11 C 1.46505 * 119.99783 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47023 * 179.97438 * 11 10 8 13 13 H 1.09000 * 110.88596 * 51.12588 * 12 11 10 14 14 C 1.55159 * 111.00148 * 174.99961 * 12 11 10 15 15 C 1.54326 * 102.94309 * 153.57711 * 14 12 11 16 16 N 1.47019 * 107.26950 * 337.80798 * 15 14 12 17 17 C 1.36939 * 125.64922 * 178.91679 * 16 15 14 18 18 H 1.08004 * 120.00010 * 180.02562 * 17 16 15 19 19 C 1.38805 * 119.99738 * 0.02562 * 17 16 15 20 20 N 1.31622 * 120.00379 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99934 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47223 * 90.00254 * 21 19 17 23 23 H 1.48502 * 109.47632 * 210.00258 * 21 19 17 24 24 H 1.48500 * 109.47556 * 330.00352 * 21 19 17 25 25 C 1.47431 * 108.70312 * 358.94002 * 16 15 14 26 26 H 1.08998 * 109.47413 * 90.01828 * 1 2 3 27 27 H 1.09003 * 109.47052 * 210.02095 * 1 2 3 28 28 H 1.09003 * 109.47221 * 330.01948 * 1 2 3 29 29 H 1.08006 * 125.57155 * 180.24496 * 5 3 2 30 30 H 1.08004 * 126.83593 * 180.02562 * 6 5 3 31 31 H 0.96998 * 120.00533 * 359.97438 * 10 8 7 32 32 H 1.08997 * 109.46963 * 300.00193 * 11 10 8 33 33 H 1.09003 * 109.47287 * 59.99499 * 11 10 8 34 34 H 1.08999 * 110.72072 * 271.93926 * 14 12 11 35 35 H 1.08999 * 110.71966 * 35.03710 * 14 12 11 36 36 H 1.09000 * 109.87909 * 97.21950 * 15 14 12 37 37 H 1.08995 * 109.88350 * 218.39002 * 15 14 12 38 38 H 0.96998 * 120.00158 * 179.97438 * 20 19 17 39 39 H 1.09006 * 110.36508 * 265.28759 * 25 16 15 40 40 H 1.09004 * 110.36601 * 142.96841 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2947 1.0921 0.0000 4 1 1.9733 2.0074 0.0004 5 6 3.6095 0.7274 0.0059 6 6 3.6882 -0.6151 0.0037 7 6 2.3070 -1.1093 -0.0040 8 6 1.8702 -2.5156 -0.0085 9 8 0.6839 -2.7839 -0.0140 10 7 2.7850 -3.5054 -0.0063 11 6 2.3504 -4.9045 -0.0102 12 6 3.5767 -5.8194 -0.0073 13 1 4.2675 -5.5408 0.7885 14 6 3.1590 -7.3087 0.1149 15 6 4.3291 -8.0526 -0.5628 16 7 4.9955 -7.0949 -1.4573 17 6 6.0966 -7.3561 -2.2284 18 1 6.5134 -6.5812 -2.8548 19 6 6.6770 -8.6168 -2.2050 20 7 6.1687 -9.5613 -1.4421 21 14 8.1785 -8.9734 -3.2574 22 1 9.4089 -8.6652 -2.4851 23 1 8.1830 -10.4072 -3.6441 24 1 8.1376 -8.1313 -4.4799 25 6 4.2823 -5.8065 -1.3862 26 1 -0.3634 -0.0003 -1.0276 27 1 -0.3633 -0.8898 0.5142 28 1 -0.3634 0.8902 0.5135 29 1 4.4497 1.4060 0.0109 30 1 4.5890 -1.2109 0.0075 31 1 3.7311 -3.2914 -0.0022 32 1 1.7483 -5.1004 0.8770 33 1 1.7554 -5.0977 -0.9029 34 1 3.0715 -7.6000 1.1616 35 1 2.2239 -7.4917 -0.4144 36 1 5.0315 -8.4048 0.1926 37 1 3.9482 -8.8953 -1.1396 38 1 6.5741 -10.4423 -1.4261 39 1 3.5473 -5.7350 -2.1880 40 1 4.9887 -4.9783 -1.4431 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028471666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:24 Heat of formation + Delta-G solvation = 0.293804 kcal Electronic energy + Delta-G solvation = -21014.332490 eV Core-core repulsion = 17829.019640 eV Total energy + Delta-G solvation = -3185.312850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.10997 -40.24505 -39.09154 -35.95623 -34.29343 -32.42032 -32.23899 -31.35575 -29.82535 -27.58620 -26.96790 -25.33101 -23.16251 -21.94149 -21.57060 -21.31994 -20.22565 -18.82390 -18.49323 -17.31332 -16.82154 -16.64164 -16.40428 -15.97996 -15.49451 -15.29409 -14.68986 -14.45131 -14.26881 -13.96979 -13.93138 -13.78495 -13.56968 -13.39886 -13.37153 -12.99543 -12.76293 -12.61018 -12.43789 -12.01266 -11.85595 -11.82489 -11.52316 -11.44528 -10.81250 -10.69024 -10.07068 -9.67693 -9.06887 -8.88394 -7.83409 -5.19159 0.79591 1.46752 1.49041 1.57692 1.58342 2.19217 2.50952 2.60854 2.63473 3.34617 3.63686 3.82158 3.96359 4.04052 4.06434 4.14790 4.33483 4.36728 4.48248 4.64843 4.69733 4.75382 4.75615 4.84435 4.94018 5.01502 5.07846 5.10108 5.11199 5.31977 5.41067 5.46813 5.58810 5.69598 5.79422 5.83484 6.02204 6.21580 6.66273 6.77140 7.11931 7.40670 7.79479 8.44355 9.27175 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027834 B = 0.003414 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.733147 B = 8200.582920 C = 8974.529593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.098 3.902 3 N -0.538 5.538 4 H 0.433 0.567 5 C -0.003 4.003 6 C -0.190 4.190 7 C -0.272 4.272 8 C 0.583 3.417 9 O -0.592 6.592 10 N -0.716 5.716 11 C 0.147 3.853 12 C -0.094 4.094 13 H 0.089 0.911 14 C -0.123 4.123 15 C 0.184 3.816 16 N -0.629 5.629 17 C -0.243 4.243 18 H 0.083 0.917 19 C -0.068 4.068 20 N -0.952 5.952 21 Si 0.980 3.020 22 H -0.284 1.284 23 H -0.296 1.296 24 H -0.269 1.269 25 C 0.139 3.861 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.207 0.793 30 H 0.153 0.847 31 H 0.409 0.591 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.014 0.986 37 H 0.004 0.996 38 H 0.246 0.754 39 H 0.016 0.984 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.715 23.677 5.427 25.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.021 4.021 3 N -0.135 5.135 4 H 0.273 0.727 5 C -0.130 4.130 6 C -0.214 4.214 7 C -0.282 4.282 8 C 0.373 3.627 9 O -0.475 6.475 10 N -0.367 5.367 11 C 0.023 3.977 12 C -0.114 4.114 13 H 0.107 0.893 14 C -0.161 4.161 15 C 0.059 3.941 16 N -0.356 5.356 17 C -0.372 4.372 18 H 0.101 0.899 19 C -0.261 4.261 20 N -0.601 5.601 21 Si 0.808 3.192 22 H -0.210 1.210 23 H -0.222 1.222 24 H -0.194 1.194 25 C 0.014 3.986 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.223 0.777 30 H 0.171 0.829 31 H 0.245 0.755 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.032 0.968 37 H 0.022 0.978 38 H 0.056 0.944 39 H 0.034 0.966 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.410 23.451 5.362 25.484 hybrid contribution 1.251 -0.532 -0.641 1.503 sum -7.159 22.919 4.721 24.471 Atomic orbital electron populations 1.20531 0.86394 1.04333 1.03645 1.20508 0.94377 0.86080 1.01156 1.41601 1.05975 1.08693 1.57279 0.72666 1.22278 0.86460 0.96233 1.08047 1.22308 0.95235 0.95046 1.08820 1.20244 0.95108 0.91403 1.21467 1.17766 0.84887 0.85214 0.74800 1.90684 1.18010 1.85217 1.53566 1.45752 1.10290 1.05594 1.75024 1.21115 0.95447 0.79371 1.01769 1.22402 0.96275 0.94818 0.97904 0.89308 1.22724 0.98081 0.93993 1.01333 1.20914 0.91162 0.90738 0.91330 1.44827 1.31633 1.08916 1.50203 1.19488 1.03165 0.96553 1.18015 0.89916 1.25681 1.02711 0.96075 1.01658 1.70199 1.43055 1.03208 1.43681 0.85055 0.79023 0.76654 0.78456 1.21039 1.22215 1.19391 1.21737 0.94001 0.88044 0.94803 0.90286 0.90569 0.88897 0.77677 0.82920 0.75535 0.90967 0.92563 0.89564 0.91091 0.96823 0.97774 0.94447 0.96608 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.57 9.87 71.23 0.70 -0.86 16 2 C 0.10 1.93 7.17 41.78 0.30 2.23 16 3 N -0.54 -6.54 5.90 -182.73 -1.08 -7.62 16 4 H 0.43 1.93 8.96 -92.71 -0.83 1.10 16 5 C 0.00 -0.03 11.89 83.12 0.99 0.95 16 6 C -0.19 -3.64 10.56 23.62 0.25 -3.39 16 7 C -0.27 -6.75 6.29 -19.04 -0.12 -6.87 16 8 C 0.58 17.69 7.81 86.62 0.68 18.37 16 9 O -0.59 -21.28 14.82 -4.10 -0.06 -21.34 16 10 N -0.72 -19.91 5.50 -466.52 -2.56 -22.48 16 11 C 0.15 4.39 5.13 86.38 0.44 4.83 16 12 C -0.09 -3.14 3.05 -9.40 -0.03 -3.17 16 13 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 14 C -0.12 -4.51 6.42 31.78 0.20 -4.31 16 15 C 0.18 9.29 5.37 86.73 0.47 9.75 16 16 N -0.63 -33.05 3.39 -691.99 -2.35 -35.40 16 17 C -0.24 -13.89 10.28 84.03 0.86 -13.03 16 18 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 19 C -0.07 -3.97 5.49 84.86 0.47 -3.50 16 20 N -0.95 -58.41 10.31 21.65 0.22 -58.19 16 21 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 23 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 25 C 0.14 5.70 6.65 86.85 0.58 6.28 16 26 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.08 1.75 6.48 -2.39 -0.02 1.73 16 28 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.21 1.02 8.06 -2.91 -0.02 1.00 16 30 H 0.15 2.55 7.70 -2.91 -0.02 2.52 16 31 H 0.41 9.93 7.60 -92.71 -0.70 9.22 16 32 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.06 1.83 7.96 -2.39 -0.02 1.81 16 34 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.07 2.47 8.04 -2.39 -0.02 2.45 16 36 H 0.01 0.76 7.38 -2.39 -0.02 0.74 16 37 H 0.00 0.23 7.51 -2.39 -0.02 0.21 16 38 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 39 H 0.02 0.68 7.91 -2.38 -0.02 0.66 16 40 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -76.53 329.36 1.51 -75.02 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -0.48 Total: 14.36 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 5.79 Total: 7.28 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -5.77 Total: -123.69 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.06 Total: -21.34 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -76.53 1.51 -75.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028471666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.315 kcal (2) G-P(sol) polarization free energy of solvation -76.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds