Wall clock time and date at job start Mon Mar 30 2020 01:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.34666 * 125.80421 * 2 1 4 4 H 0.96997 * 124.85041 * 0.06112 * 3 2 1 5 5 C 1.36447 * 110.29951 * 180.29113 * 3 2 1 6 6 C 1.34489 * 108.85730 * 359.74869 * 5 3 2 7 7 C 1.36767 * 125.80561 * 179.86159 * 2 1 3 8 8 C 1.47267 * 126.93892 * 359.97438 * 7 2 1 9 9 O 1.21629 * 119.99813 * 359.71250 * 8 7 2 10 10 N 1.34774 * 120.00157 * 179.70860 * 8 7 2 11 11 C 1.46500 * 119.99832 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47114 * 179.97438 * 11 10 8 13 13 H 1.09004 * 110.64142 * 305.70316 * 12 11 10 14 14 C 1.55150 * 110.72108 * 182.55796 * 12 11 10 15 15 C 1.54913 * 101.58162 * 206.13560 * 14 12 11 16 16 N 1.47423 * 104.83095 * 37.01013 * 15 14 12 17 17 C 1.36937 * 125.64707 * 155.91227 * 16 15 14 18 18 H 1.08005 * 119.99757 * 342.04054 * 17 16 15 19 19 C 1.38809 * 120.00337 * 162.05170 * 17 16 15 20 20 N 1.31618 * 120.00566 * 156.23433 * 19 17 16 21 21 Si 1.86803 * 119.99486 * 336.24028 * 19 17 16 22 22 H 1.48490 * 109.47497 * 84.67106 * 21 19 17 23 23 H 1.48508 * 109.46950 * 204.66763 * 21 19 17 24 24 H 1.48497 * 109.47085 * 324.66439 * 21 19 17 25 25 C 1.47324 * 108.73652 * 335.71313 * 16 15 14 26 26 H 1.08998 * 109.47620 * 270.13596 * 1 2 3 27 27 H 1.09007 * 109.46710 * 30.13981 * 1 2 3 28 28 H 1.08998 * 109.46974 * 150.12699 * 1 2 3 29 29 H 1.08002 * 125.57410 * 179.72767 * 5 3 2 30 30 H 1.07993 * 126.83637 * 179.97438 * 6 5 3 31 31 H 0.96997 * 119.99866 * 359.97438 * 10 8 7 32 32 H 1.08999 * 109.47463 * 299.99805 * 11 10 8 33 33 H 1.09002 * 109.47502 * 60.00171 * 11 10 8 34 34 H 1.08998 * 111.00410 * 324.20667 * 14 12 11 35 35 H 1.08998 * 111.00773 * 88.02527 * 14 12 11 36 36 H 1.08998 * 110.37060 * 155.84893 * 15 14 12 37 37 H 1.09007 * 110.36698 * 278.06022 * 15 14 12 38 38 H 0.96998 * 120.00410 * 179.97438 * 20 19 17 39 39 H 1.08993 * 110.06098 * 241.87506 * 25 16 15 40 40 H 1.08997 * 109.84583 * 120.61063 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2948 1.0922 0.0000 4 1 1.9734 2.0074 0.0008 5 6 3.6096 0.7274 -0.0065 6 6 3.6882 -0.6152 -0.0052 7 6 2.3071 -1.1092 0.0027 8 6 1.8702 -2.5156 0.0066 9 8 0.6839 -2.7838 0.0130 10 7 2.7849 -3.5054 0.0030 11 6 2.3503 -4.9044 0.0063 12 6 3.5766 -5.8195 0.0005 13 1 4.2361 -5.5728 -0.8316 14 6 3.1492 -7.3097 -0.0609 15 6 4.3586 -8.0079 0.6095 16 7 4.7756 -7.0901 1.6851 17 6 5.4646 -7.4444 2.8142 18 1 5.4985 -8.4786 3.1239 19 6 6.1194 -6.4746 3.5609 20 7 6.3724 -6.6845 4.8353 21 14 6.6413 -4.8713 2.7568 22 1 5.5027 -3.9182 2.7681 23 1 7.7818 -4.2887 3.5087 24 1 7.0546 -5.1323 1.3546 25 6 4.3329 -5.7273 1.3425 26 1 -0.3634 0.0024 1.0276 27 1 -0.3633 0.8888 -0.5160 28 1 -0.3633 -0.8911 -0.5119 29 1 4.4498 1.4060 -0.0121 30 1 4.5889 -1.2109 -0.0096 31 1 3.7310 -3.2914 -0.0026 32 1 1.7562 -5.0982 0.8994 33 1 1.7475 -5.0998 -0.8806 34 1 2.2356 -7.4779 0.5093 35 1 3.0296 -7.6397 -1.0928 36 1 4.0585 -8.9693 1.0264 37 1 5.1658 -8.1429 -0.1105 38 1 6.8303 -6.0070 5.3570 39 1 5.1954 -5.0693 1.2376 40 1 3.6671 -5.3486 2.1180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028471667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:28 Heat of formation + Delta-G solvation = 31.807002 kcal Electronic energy + Delta-G solvation = -21471.188974 eV Core-core repulsion = 18287.242639 eV Total energy + Delta-G solvation = -3183.946335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.34048 -39.11587 -37.79187 -34.55407 -32.55333 -31.67056 -31.33693 -30.18161 -28.61797 -26.64579 -25.54992 -23.77869 -22.14421 -20.81003 -20.39464 -20.14914 -19.13337 -17.80601 -16.91764 -16.17378 -15.95463 -15.54946 -15.19396 -14.49216 -14.21517 -13.87604 -13.54339 -13.35500 -13.19728 -13.10962 -12.83034 -12.68626 -12.67350 -12.42446 -11.85338 -11.70643 -11.49561 -11.23943 -10.89940 -10.62290 -10.52901 -10.16432 -9.81805 -9.65774 -9.30222 -9.03649 -8.76912 -8.58722 -8.28410 -7.02727 -5.91928 -3.19821 1.71408 2.31065 2.94882 3.36832 3.46941 3.51834 3.57485 3.67669 4.57869 4.67847 4.82833 4.88617 5.03692 5.08460 5.14710 5.18171 5.32216 5.39815 5.49244 5.50131 5.71822 5.74547 5.81678 5.90217 5.94487 6.07566 6.13481 6.16755 6.34648 6.47992 6.59129 6.62095 6.71307 6.79629 6.82141 6.83585 7.26723 7.74831 7.79338 8.34396 8.50907 8.86944 9.72651 10.22122 11.24728 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.004987 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.366045 B = 5613.292019 C = 6611.712828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.103 3.897 3 N -0.555 5.555 4 H 0.415 0.585 5 C -0.019 4.019 6 C -0.167 4.167 7 C -0.234 4.234 8 C 0.590 3.410 9 O -0.556 6.556 10 N -0.723 5.723 11 C 0.135 3.865 12 C -0.116 4.116 13 H 0.079 0.921 14 C -0.121 4.121 15 C 0.133 3.867 16 N -0.611 5.611 17 C -0.242 4.242 18 H 0.093 0.907 19 C 0.021 3.979 20 N -0.907 5.907 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.305 1.305 24 H -0.280 1.280 25 C 0.125 3.875 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.169 0.831 30 H 0.145 0.855 31 H 0.400 0.600 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.050 0.950 37 H 0.024 0.976 38 H 0.262 0.738 39 H 0.023 0.977 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.539 15.063 -13.331 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.015 4.015 3 N -0.150 5.150 4 H 0.251 0.749 5 C -0.146 4.146 6 C -0.191 4.191 7 C -0.244 4.244 8 C 0.379 3.621 9 O -0.437 6.437 10 N -0.373 5.373 11 C 0.011 3.989 12 C -0.135 4.135 13 H 0.098 0.902 14 C -0.160 4.160 15 C 0.007 3.993 16 N -0.338 5.338 17 C -0.369 4.369 18 H 0.110 0.890 19 C -0.178 4.178 20 N -0.551 5.551 21 Si 0.718 3.282 22 H -0.211 1.211 23 H -0.233 1.233 24 H -0.207 1.207 25 C 0.000 4.000 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.187 0.813 30 H 0.163 0.837 31 H 0.234 0.766 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.068 0.932 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.041 0.959 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.263 14.981 -13.078 21.938 hybrid contribution 1.101 1.573 -0.283 1.941 sum -8.162 16.555 -13.360 22.786 Atomic orbital electron populations 1.20567 0.86981 1.04065 1.03513 1.20334 0.93712 0.85612 1.01818 1.41583 1.06271 1.08323 1.58870 0.74908 1.21706 0.85628 0.96436 1.10817 1.22106 0.95975 0.93800 1.07201 1.20184 0.93241 0.92226 1.18757 1.17313 0.85271 0.84050 0.75449 1.90707 1.16600 1.84548 1.51803 1.45822 1.09907 1.06212 1.75367 1.21374 0.96236 0.79060 1.02232 1.22458 0.96225 0.95746 0.99119 0.90246 1.22725 0.99493 0.93473 1.00314 1.21610 0.93407 0.94081 0.90194 1.44873 1.65407 1.02469 1.21038 1.18679 1.25132 0.95916 0.97195 0.88972 1.24951 0.99587 0.97693 0.95550 1.69862 1.44371 1.35633 1.05265 0.86896 0.77775 0.84843 0.78728 1.21104 1.23330 1.20735 1.21753 0.95727 0.88915 0.93572 0.90424 0.92021 0.87965 0.81337 0.83729 0.76555 0.91058 0.91466 0.90889 0.91267 0.93207 0.95827 0.92773 0.95926 0.93909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.92 9.88 36.00 0.36 -0.57 16 2 C 0.10 1.20 7.17 -81.88 -0.59 0.61 16 3 N -0.55 -4.80 5.90 -9.11 -0.05 -4.85 16 4 H 0.41 2.07 8.96 -40.82 -0.37 1.70 16 5 C -0.02 -0.18 11.89 -16.82 -0.20 -0.38 16 6 C -0.17 -2.02 10.56 -37.50 -0.40 -2.42 16 7 C -0.23 -3.31 6.29 -103.35 -0.65 -3.96 16 8 C 0.59 9.64 7.81 -12.59 -0.10 9.55 16 9 O -0.56 -10.22 14.82 5.25 0.08 -10.14 16 10 N -0.72 -11.24 5.43 -61.43 -0.33 -11.57 16 11 C 0.13 2.10 5.00 -4.04 -0.02 2.08 16 12 C -0.12 -1.93 2.98 -88.79 -0.26 -2.19 16 13 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 14 C -0.12 -1.90 6.54 -24.58 -0.16 -2.06 16 15 C 0.13 2.60 7.23 -2.53 -0.02 2.58 16 16 N -0.61 -15.03 3.22 -169.83 -0.55 -15.58 16 17 C -0.24 -7.01 10.56 -15.06 -0.16 -7.17 16 18 H 0.09 2.80 8.06 -52.48 -0.42 2.38 16 19 C 0.02 0.61 5.43 -17.43 -0.09 0.52 16 20 N -0.91 -28.48 13.97 55.49 0.78 -27.71 16 21 Si 0.89 22.92 24.38 -169.99 -4.15 18.78 16 22 H -0.28 -7.07 6.83 56.52 0.39 -6.68 16 23 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 24 H -0.28 -7.09 6.87 56.52 0.39 -6.71 16 25 C 0.13 2.74 4.55 -2.90 -0.01 2.73 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.10 1.22 6.47 -51.93 -0.34 0.88 16 29 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.14 1.61 7.69 -52.49 -0.40 1.21 16 31 H 0.40 5.81 7.53 -40.82 -0.31 5.51 16 32 H 0.07 1.22 8.01 -51.93 -0.42 0.80 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 39 H 0.02 0.54 3.55 -51.93 -0.18 0.35 16 40 H 0.04 1.01 7.73 -51.93 -0.40 0.61 16 LS Contribution 323.82 15.07 4.88 4.88 Total: -1.00 -35.46 323.82 -7.45 -42.91 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -5.80 Total: 3.96 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -2.31 Total: -0.68 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.16 Total: -59.71 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.08 Total: -10.14 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.15 Total: 18.78 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.46 -7.45 -42.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028471667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.721 kcal (2) G-P(sol) polarization free energy of solvation -35.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds