Wall clock time and date at job start Mon Mar 30 2020 01:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.34666 * 125.80421 * 2 1 4 4 H 0.96997 * 124.85041 * 0.06112 * 3 2 1 5 5 C 1.36447 * 110.29951 * 180.29113 * 3 2 1 6 6 C 1.34489 * 108.85730 * 359.74869 * 5 3 2 7 7 C 1.36767 * 125.80561 * 179.86159 * 2 1 3 8 8 C 1.47267 * 126.93892 * 359.97438 * 7 2 1 9 9 O 1.21629 * 119.99813 * 359.71250 * 8 7 2 10 10 N 1.34774 * 120.00157 * 179.70860 * 8 7 2 11 11 C 1.46500 * 119.99832 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47114 * 179.97438 * 11 10 8 13 13 H 1.09004 * 110.64142 * 305.70316 * 12 11 10 14 14 C 1.55150 * 110.72108 * 182.55796 * 12 11 10 15 15 C 1.54913 * 101.58162 * 206.13560 * 14 12 11 16 16 N 1.47423 * 104.83095 * 37.01013 * 15 14 12 17 17 C 1.36937 * 125.64707 * 155.91227 * 16 15 14 18 18 H 1.08005 * 119.99757 * 342.04054 * 17 16 15 19 19 C 1.38809 * 120.00337 * 162.05170 * 17 16 15 20 20 N 1.31618 * 120.00566 * 156.23433 * 19 17 16 21 21 Si 1.86803 * 119.99486 * 336.24028 * 19 17 16 22 22 H 1.48490 * 109.47497 * 84.67106 * 21 19 17 23 23 H 1.48508 * 109.46950 * 204.66763 * 21 19 17 24 24 H 1.48497 * 109.47085 * 324.66439 * 21 19 17 25 25 C 1.47324 * 108.73652 * 335.71313 * 16 15 14 26 26 H 1.08998 * 109.47620 * 270.13596 * 1 2 3 27 27 H 1.09007 * 109.46710 * 30.13981 * 1 2 3 28 28 H 1.08998 * 109.46974 * 150.12699 * 1 2 3 29 29 H 1.08002 * 125.57410 * 179.72767 * 5 3 2 30 30 H 1.07993 * 126.83637 * 179.97438 * 6 5 3 31 31 H 0.96997 * 119.99866 * 359.97438 * 10 8 7 32 32 H 1.08999 * 109.47463 * 299.99805 * 11 10 8 33 33 H 1.09002 * 109.47502 * 60.00171 * 11 10 8 34 34 H 1.08998 * 111.00410 * 324.20667 * 14 12 11 35 35 H 1.08998 * 111.00773 * 88.02527 * 14 12 11 36 36 H 1.08998 * 110.37060 * 155.84893 * 15 14 12 37 37 H 1.09007 * 110.36698 * 278.06022 * 15 14 12 38 38 H 0.96998 * 120.00410 * 179.97438 * 20 19 17 39 39 H 1.08993 * 110.06098 * 241.87506 * 25 16 15 40 40 H 1.08997 * 109.84583 * 120.61063 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2948 1.0922 0.0000 4 1 1.9734 2.0074 0.0008 5 6 3.6096 0.7274 -0.0065 6 6 3.6882 -0.6152 -0.0052 7 6 2.3071 -1.1092 0.0027 8 6 1.8702 -2.5156 0.0066 9 8 0.6839 -2.7838 0.0130 10 7 2.7849 -3.5054 0.0030 11 6 2.3503 -4.9044 0.0063 12 6 3.5766 -5.8195 0.0005 13 1 4.2361 -5.5728 -0.8316 14 6 3.1492 -7.3097 -0.0609 15 6 4.3586 -8.0079 0.6095 16 7 4.7756 -7.0901 1.6851 17 6 5.4646 -7.4444 2.8142 18 1 5.4985 -8.4786 3.1239 19 6 6.1194 -6.4746 3.5609 20 7 6.3724 -6.6845 4.8353 21 14 6.6413 -4.8713 2.7568 22 1 5.5027 -3.9182 2.7681 23 1 7.7818 -4.2887 3.5087 24 1 7.0546 -5.1323 1.3546 25 6 4.3329 -5.7273 1.3425 26 1 -0.3634 0.0024 1.0276 27 1 -0.3633 0.8888 -0.5160 28 1 -0.3633 -0.8911 -0.5119 29 1 4.4498 1.4060 -0.0121 30 1 4.5889 -1.2109 -0.0096 31 1 3.7310 -3.2914 -0.0026 32 1 1.7562 -5.0982 0.8994 33 1 1.7475 -5.0998 -0.8806 34 1 2.2356 -7.4779 0.5093 35 1 3.0296 -7.6397 -1.0928 36 1 4.0585 -8.9693 1.0264 37 1 5.1658 -8.1429 -0.1105 38 1 6.8303 -6.0070 5.3570 39 1 5.1954 -5.0693 1.2376 40 1 3.6671 -5.3486 2.1180 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028471667.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:28 Heat of formation + Delta-G solvation = 5.439936 kcal Electronic energy + Delta-G solvation = -21472.332336 eV Core-core repulsion = 18287.242639 eV Total energy + Delta-G solvation = -3185.089697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.17085 -40.38078 -39.30011 -35.98886 -34.47881 -32.60451 -32.43253 -31.67173 -30.13193 -27.76303 -26.97792 -25.41809 -23.31952 -22.02817 -21.74647 -21.44826 -20.29718 -18.99352 -18.58696 -17.79424 -17.14884 -16.81959 -16.36975 -15.99723 -15.42146 -15.36118 -14.94574 -14.80350 -14.36984 -14.22618 -14.18190 -14.00663 -13.62419 -13.43544 -13.41474 -13.20913 -13.00025 -12.64026 -12.48945 -12.40183 -12.06596 -11.83054 -11.58727 -11.22181 -10.87808 -10.76041 -10.13970 -9.74744 -9.12929 -9.08015 -8.20087 -5.44343 0.73659 1.28379 1.35222 1.46437 1.51240 2.13437 2.40678 2.53339 2.57879 3.00209 3.31477 3.69369 3.83992 3.86949 3.91294 4.06744 4.28822 4.29686 4.38947 4.47097 4.57145 4.64587 4.67296 4.72199 4.79991 4.87582 4.94575 5.04249 5.06109 5.10460 5.18647 5.27836 5.43012 5.51748 5.67966 5.76305 5.95700 6.08582 6.58427 6.69563 6.75448 7.32375 7.53386 8.10424 9.00257 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018961 B = 0.004987 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.366045 B = 5613.292019 C = 6611.712828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.102 3.898 3 N -0.537 5.537 4 H 0.434 0.566 5 C 0.000 4.000 6 C -0.197 4.197 7 C -0.276 4.276 8 C 0.583 3.417 9 O -0.587 6.587 10 N -0.723 5.723 11 C 0.142 3.858 12 C -0.099 4.099 13 H 0.104 0.896 14 C -0.107 4.107 15 C 0.123 3.877 16 N -0.632 5.632 17 C -0.239 4.239 18 H 0.060 0.940 19 C -0.041 4.041 20 N -0.956 5.956 21 Si 0.953 3.047 22 H -0.273 1.273 23 H -0.309 1.309 24 H -0.267 1.267 25 C 0.121 3.879 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.207 0.793 30 H 0.147 0.853 31 H 0.405 0.595 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.046 0.954 37 H 0.037 0.963 38 H 0.262 0.738 39 H 0.017 0.983 40 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.819 17.564 -16.009 25.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.018 4.018 3 N -0.134 5.134 4 H 0.275 0.725 5 C -0.127 4.127 6 C -0.220 4.220 7 C -0.286 4.286 8 C 0.374 3.626 9 O -0.470 6.470 10 N -0.373 5.373 11 C 0.018 3.982 12 C -0.118 4.118 13 H 0.122 0.878 14 C -0.145 4.145 15 C -0.001 4.001 16 N -0.359 5.359 17 C -0.367 4.367 18 H 0.078 0.922 19 C -0.236 4.236 20 N -0.603 5.603 21 Si 0.783 3.217 22 H -0.199 1.199 23 H -0.238 1.238 24 H -0.193 1.193 25 C -0.004 4.004 26 H 0.096 0.904 27 H 0.114 0.886 28 H 0.096 0.904 29 H 0.224 0.776 30 H 0.165 0.835 31 H 0.240 0.760 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.132 0.868 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -9.553 17.500 -15.807 25.444 hybrid contribution 1.144 0.741 0.572 1.478 sum -8.409 18.241 -15.235 25.210 Atomic orbital electron populations 1.20544 0.86104 1.04533 1.03664 1.20532 0.94477 0.85927 1.00838 1.41592 1.05868 1.08755 1.57212 0.72523 1.22257 0.86590 0.96061 1.07837 1.22287 0.95274 0.95242 1.09225 1.20271 0.95015 0.91629 1.21651 1.17746 0.84928 0.85180 0.74772 1.90678 1.17723 1.85180 1.53417 1.45829 1.10160 1.06095 1.75239 1.21266 0.95670 0.79145 1.02132 1.22382 0.96235 0.96659 0.96565 0.87777 1.22708 0.97405 0.91993 1.02414 1.21883 0.95393 0.93577 0.89295 1.45030 1.64881 1.04733 1.21213 1.18664 1.24807 0.94647 0.98626 0.92205 1.25644 1.00348 1.01699 0.95863 1.69994 1.46238 1.37288 1.06766 0.85817 0.77220 0.80664 0.77992 1.19941 1.23802 1.19275 1.21823 0.95447 0.87238 0.95851 0.90374 0.88644 0.90360 0.77595 0.83504 0.75997 0.93155 0.89525 0.90883 0.86838 0.93578 0.94470 0.92933 0.96584 0.96488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 9.88 71.23 0.70 -0.95 16 2 C 0.10 2.18 7.17 41.78 0.30 2.48 16 3 N -0.54 -7.51 5.90 -182.72 -1.08 -8.59 16 4 H 0.43 2.57 8.96 -92.71 -0.83 1.74 16 5 C 0.00 0.00 11.89 83.12 0.99 0.99 16 6 C -0.20 -4.38 10.56 23.62 0.25 -4.14 16 7 C -0.28 -7.51 6.29 -19.04 -0.12 -7.63 16 8 C 0.58 18.89 7.81 86.62 0.68 19.57 16 9 O -0.59 -21.75 14.82 -4.12 -0.06 -21.81 16 10 N -0.72 -21.76 5.43 -466.51 -2.53 -24.29 16 11 C 0.14 4.19 5.00 86.38 0.43 4.63 16 12 C -0.10 -3.03 2.98 -9.61 -0.03 -3.06 16 13 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 14 C -0.11 -3.02 6.54 31.99 0.21 -2.81 16 15 C 0.12 4.62 7.23 86.86 0.63 5.25 16 16 N -0.63 -30.97 3.22 -691.22 -2.22 -33.19 16 17 C -0.24 -14.20 10.56 84.03 0.89 -13.31 16 18 H 0.06 3.83 8.06 -2.91 -0.02 3.81 16 19 C -0.04 -2.50 5.43 84.86 0.46 -2.04 16 20 N -0.96 -62.11 13.97 21.65 0.30 -61.80 16 21 Si 0.95 48.11 24.38 68.60 1.67 49.79 16 22 H -0.27 -13.12 6.83 99.48 0.68 -12.44 16 23 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 24 H -0.27 -12.73 6.87 99.48 0.68 -12.05 16 25 C 0.12 5.18 4.55 86.67 0.39 5.57 16 26 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 28 H 0.08 1.85 6.47 -2.39 -0.02 1.83 16 29 H 0.21 1.50 8.06 -2.91 -0.02 1.48 16 30 H 0.15 3.04 7.69 -2.91 -0.02 3.02 16 31 H 0.40 11.23 7.53 -92.71 -0.70 10.53 16 32 H 0.05 1.71 8.01 -2.39 -0.02 1.69 16 33 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.07 2.09 8.05 -2.39 -0.02 2.07 16 35 H 0.11 2.30 8.14 -2.39 -0.02 2.29 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 39 H 0.02 0.74 3.55 -2.39 -0.01 0.73 16 40 H 0.02 0.81 7.73 -2.39 -0.02 0.79 16 Total: -1.00 -80.41 323.82 1.35 -79.07 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -0.52 Total: 16.29 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: 5.78 Total: 4.54 kcal Atomic # 7 Polarization: -122.34 SS G_CDS: -5.53 Total: -127.87 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.06 Total: -21.81 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 1.67 Total: 49.79 kcal Total: -80.41 1.35 -79.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028471667.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.507 kcal (2) G-P(sol) polarization free energy of solvation -80.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds