Wall clock time and date at job start Mon Mar 30 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39832 * 126.45947 * 2 1 4 4 C 1.35452 * 107.86723 * 180.29856 * 3 2 1 5 5 N 1.35535 * 108.87023 * 359.73691 * 4 3 2 6 6 H 0.96998 * 125.67562 * 180.02562 * 5 4 3 7 7 C 1.37653 * 108.64390 * 0.02562 * 5 4 3 8 8 C 1.46681 * 126.23195 * 179.97438 * 7 5 4 9 9 O 1.21692 * 119.99789 * 180.02562 * 8 7 5 10 10 N 1.34775 * 120.00050 * 0.02562 * 8 7 5 11 11 C 1.46497 * 119.99944 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47114 * 180.02562 * 11 10 8 13 13 H 1.08997 * 110.92180 * 57.44684 * 12 11 10 14 14 C 1.55155 * 111.00532 * 181.35298 * 12 11 10 15 15 C 1.54327 * 102.94571 * 153.57522 * 14 12 11 16 16 N 1.47024 * 107.26774 * 337.80617 * 15 14 12 17 17 C 1.36941 * 125.64618 * 179.20447 * 16 15 14 18 18 H 1.08005 * 119.99780 * 179.68989 * 17 16 15 19 19 C 1.38813 * 119.99913 * 359.69358 * 17 16 15 20 20 N 1.31616 * 119.99926 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99719 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47341 * 89.99896 * 21 19 17 23 23 H 1.48503 * 109.46756 * 209.99724 * 21 19 17 24 24 H 1.48496 * 109.46957 * 329.99498 * 21 19 17 25 25 C 1.47426 * 108.70449 * 358.94057 * 16 15 14 26 26 H 1.08997 * 109.47163 * 270.13645 * 1 2 3 27 27 H 1.08997 * 109.47156 * 30.14401 * 1 2 3 28 28 H 1.09003 * 109.46891 * 150.13733 * 1 2 3 29 29 H 1.08004 * 126.06704 * 0.02562 * 3 2 1 30 30 H 1.08001 * 125.56684 * 179.77975 * 4 3 2 31 31 H 0.97000 * 120.00160 * 0.02562 * 10 8 7 32 32 H 1.09002 * 109.46937 * 60.00106 * 11 10 8 33 33 H 1.09002 * 109.47231 * 300.00009 * 11 10 8 34 34 H 1.08999 * 110.71965 * 271.93488 * 14 12 11 35 35 H 1.09000 * 110.72417 * 35.03508 * 14 12 11 36 36 H 1.08995 * 109.88184 * 218.39040 * 15 14 12 37 37 H 1.09002 * 109.88385 * 97.22047 * 15 14 12 38 38 H 0.97001 * 119.99407 * 180.02562 * 20 19 17 39 39 H 1.09002 * 110.36518 * 142.96440 * 25 16 15 40 40 H 1.08995 * 110.36673 * 265.17549 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1246 0.0000 4 6 3.6218 0.6928 -0.0067 5 7 3.6283 -0.6625 -0.0051 6 1 4.4190 -1.2244 -0.0085 7 6 2.3262 -1.1089 0.0023 8 6 1.8898 -2.5093 0.0058 9 8 0.7026 -2.7766 0.0119 10 7 2.8036 -3.5000 0.0022 11 6 2.3677 -4.8986 0.0063 12 6 3.5931 -5.8147 0.0017 13 1 4.2370 -5.6077 0.8564 14 6 3.1713 -7.3075 -0.0284 15 6 4.3797 -7.9947 -0.6987 16 7 5.0953 -6.9662 -1.4679 17 6 6.2364 -7.1656 -2.1982 18 1 6.6849 -6.3425 -2.7348 19 6 6.8168 -8.4256 -2.2489 20 7 6.2705 -9.4285 -1.5946 21 14 8.3738 -8.6973 -3.2445 22 1 9.5599 -8.4583 -2.3837 23 1 8.4014 -10.0939 -3.7487 24 1 8.3977 -7.7560 -4.3928 25 6 4.3773 -5.6862 -1.3281 26 1 -0.3633 0.0024 1.0276 27 1 -0.3633 0.8887 -0.5161 28 1 -0.3633 -0.8912 -0.5117 29 1 2.0136 2.1548 0.0004 30 1 4.4972 1.3252 -0.0118 31 1 3.7499 -3.2869 -0.0023 32 1 1.7644 -5.0937 -0.8803 33 1 1.7737 -5.0915 0.8997 34 1 3.0239 -7.6870 0.9827 35 1 2.2687 -7.4413 -0.6245 36 1 4.0340 -8.7836 -1.3665 37 1 5.0379 -8.4128 0.0630 38 1 6.6763 -10.3089 -1.6298 39 1 5.0846 -4.8587 -1.2730 40 1 3.6912 -5.5430 -2.1628 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028514912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:24 Heat of formation + Delta-G solvation = 1.824485 kcal Electronic energy + Delta-G solvation = -21095.531806 eV Core-core repulsion = 17910.285331 eV Total energy + Delta-G solvation = -3185.246475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.25576 -40.30470 -39.16042 -36.14654 -34.41857 -33.38100 -31.84092 -30.76532 -29.71263 -27.94509 -27.15823 -25.32334 -23.14529 -22.01360 -21.46181 -21.43252 -20.10333 -19.51713 -18.78007 -17.27869 -16.86368 -16.63937 -16.49536 -16.04928 -15.52201 -15.14081 -14.78276 -14.54735 -14.46151 -14.00450 -13.84219 -13.82442 -13.56569 -13.41023 -13.15300 -13.04166 -12.79863 -12.64602 -12.52065 -12.04094 -11.94478 -11.86996 -11.57036 -11.48929 -11.00613 -10.72042 -10.20888 -9.67540 -9.08976 -8.91861 -7.86563 -5.22449 0.48436 1.45034 1.46951 1.55568 1.85979 2.08210 2.29207 2.35925 2.48194 3.31799 3.57091 3.75072 3.93862 3.99385 4.01940 4.28071 4.28840 4.39417 4.43462 4.60001 4.68749 4.76938 4.87844 4.90136 4.91635 5.02407 5.03094 5.06042 5.19128 5.29904 5.41064 5.43835 5.49001 5.66089 5.76290 5.79800 6.01058 6.18422 6.46509 6.63211 7.08659 7.13810 7.76289 8.40686 9.23924 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027165 B = 0.003507 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.476312 B = 7981.071083 C = 8806.546243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.094 4.094 3 C -0.231 4.231 4 C 0.047 3.953 5 N -0.532 5.532 6 H 0.429 0.571 7 C -0.090 4.090 8 C 0.584 3.416 9 O -0.569 6.569 10 N -0.718 5.718 11 C 0.146 3.854 12 C -0.095 4.095 13 H 0.091 0.909 14 C -0.123 4.123 15 C 0.183 3.817 16 N -0.629 5.629 17 C -0.244 4.244 18 H 0.084 0.916 19 C -0.068 4.068 20 N -0.952 5.952 21 Si 0.979 3.021 22 H -0.284 1.284 23 H -0.296 1.296 24 H -0.269 1.269 25 C 0.139 3.861 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.161 0.839 30 H 0.212 0.788 31 H 0.406 0.594 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.003 0.997 37 H 0.014 0.986 38 H 0.246 0.754 39 H 0.049 0.951 40 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.531 20.443 5.640 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.104 4.104 3 C -0.254 4.254 4 C -0.090 4.090 5 N -0.129 5.129 6 H 0.268 0.732 7 C -0.203 4.203 8 C 0.374 3.626 9 O -0.449 6.449 10 N -0.369 5.369 11 C 0.022 3.978 12 C -0.115 4.115 13 H 0.109 0.891 14 C -0.162 4.162 15 C 0.058 3.942 16 N -0.355 5.355 17 C -0.373 4.373 18 H 0.102 0.898 19 C -0.261 4.261 20 N -0.601 5.601 21 Si 0.807 3.193 22 H -0.210 1.210 23 H -0.223 1.223 24 H -0.194 1.194 25 C 0.014 3.986 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.075 0.925 29 H 0.179 0.821 30 H 0.229 0.771 31 H 0.241 0.759 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.021 0.979 37 H 0.032 0.968 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -6.120 19.908 5.580 21.562 hybrid contribution 1.623 -1.030 -0.638 2.025 sum -4.497 18.879 4.943 20.026 Atomic orbital electron populations 1.20303 0.89609 1.02532 1.02082 1.20290 0.96313 0.91854 1.01896 1.21111 0.92180 0.99112 1.13010 1.22712 1.00496 0.82640 1.03126 1.42014 1.06582 1.08028 1.56280 0.73180 1.20064 0.85350 0.92662 1.22196 1.17338 0.85490 0.83941 0.75875 1.90776 1.17526 1.84020 1.52575 1.45813 1.09827 1.06111 1.75144 1.21182 0.95622 0.78739 1.02241 1.22419 0.95894 0.94786 0.98393 0.89121 1.22724 0.97834 0.94182 1.01421 1.20920 0.90471 0.90124 0.92708 1.44813 1.27447 1.06027 1.57258 1.19477 1.00267 0.95128 1.22420 0.89810 1.25678 1.02653 0.95733 1.01995 1.70194 1.41937 1.00641 1.47289 0.85069 0.79145 0.76698 0.78364 1.21035 1.22311 1.19358 1.21732 0.93775 0.88415 0.94721 0.91557 0.90249 0.92544 0.82119 0.77120 0.75869 0.92181 0.90534 0.89526 0.91093 0.97861 0.96790 0.94436 0.93272 0.96623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.95 9.83 71.24 0.70 -1.25 16 2 C -0.09 -2.15 6.21 -19.57 -0.12 -2.27 16 3 C -0.23 -3.81 10.76 22.01 0.24 -3.57 16 4 C 0.05 0.59 11.89 83.48 0.99 1.58 16 5 N -0.53 -8.22 5.99 -183.61 -1.10 -9.32 16 6 H 0.43 4.41 8.19 -92.71 -0.76 3.65 16 7 C -0.09 -2.12 7.06 40.35 0.28 -1.83 16 8 C 0.58 16.33 7.79 86.45 0.67 17.00 16 9 O -0.57 -19.75 14.80 -4.32 -0.06 -19.82 16 10 N -0.72 -17.32 5.40 -467.09 -2.52 -19.85 16 11 C 0.15 3.93 5.12 86.38 0.44 4.37 16 12 C -0.10 -2.92 3.10 -9.40 -0.03 -2.95 16 13 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 14 C -0.12 -4.30 6.42 31.78 0.20 -4.09 16 15 C 0.18 8.95 5.37 86.73 0.47 9.41 16 16 N -0.63 -31.73 3.39 -691.97 -2.35 -34.08 16 17 C -0.24 -13.50 10.28 84.03 0.86 -12.63 16 18 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 19 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 20 N -0.95 -57.27 10.31 21.65 0.22 -57.05 16 21 Si 0.98 45.29 29.55 68.60 2.03 47.32 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 C 0.14 5.28 6.41 86.86 0.56 5.83 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.52 6.49 -2.39 -0.02 1.51 16 29 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 30 H 0.21 0.80 8.06 -2.91 -0.02 0.77 16 31 H 0.41 7.83 7.47 -92.71 -0.69 7.14 16 32 H 0.06 1.78 8.10 -2.39 -0.02 1.76 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 36 H 0.00 0.18 7.51 -2.39 -0.02 0.16 16 37 H 0.01 0.76 7.38 -2.39 -0.02 0.74 16 38 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.02 0.63 8.01 -2.39 -0.02 0.61 16 Total: -1.00 -74.21 328.79 1.55 -72.66 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -0.40 Total: 13.90 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 5.73 Total: 6.23 kcal Atomic # 7 Polarization: -114.55 SS G_CDS: -5.75 Total: -120.30 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.06 Total: -19.82 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -74.21 1.55 -72.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028514912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.485 kcal (2) G-P(sol) polarization free energy of solvation -74.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds