Wall clock time and date at job start Mon Mar 30 2020 02:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39834 * 126.45371 * 2 1 4 4 C 1.35461 * 107.86141 * 180.28655 * 3 2 1 5 5 N 1.35532 * 108.87094 * 359.73777 * 4 3 2 6 6 H 0.97001 * 125.67994 * 179.97438 * 5 4 3 7 7 C 1.37661 * 108.64366 * 0.02562 * 5 4 3 8 8 C 1.46674 * 126.23150 * 180.02562 * 7 5 4 9 9 O 1.21695 * 120.00339 * 180.29485 * 8 7 5 10 10 N 1.34784 * 119.99994 * 0.02562 * 8 7 5 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47267 * 180.02562 * 11 10 8 13 13 H 1.09003 * 110.63957 * 305.70126 * 12 11 10 14 14 C 1.55163 * 110.72266 * 182.56083 * 12 11 10 15 15 C 1.54906 * 101.58167 * 206.13578 * 14 12 11 16 16 N 1.47419 * 104.83330 * 37.00646 * 15 14 12 17 17 C 1.36944 * 125.65117 * 155.90670 * 16 15 14 18 18 H 1.07990 * 120.00578 * 179.97438 * 17 16 15 19 19 C 1.38815 * 119.99356 * 359.97438 * 17 16 15 20 20 N 1.31618 * 120.00241 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99620 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46837 * 60.00058 * 21 19 17 23 23 H 1.48502 * 109.46815 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47033 * 299.99701 * 21 19 17 25 25 C 1.47317 * 108.73874 * 335.71620 * 16 15 14 26 26 H 1.09002 * 109.47192 * 270.15509 * 1 2 3 27 27 H 1.08996 * 109.47031 * 30.15744 * 1 2 3 28 28 H 1.08995 * 109.46792 * 150.15803 * 1 2 3 29 29 H 1.07996 * 126.07254 * 0.02623 * 3 2 1 30 30 H 1.08001 * 125.56256 * 179.70325 * 4 3 2 31 31 H 0.96999 * 120.00044 * 0.02562 * 10 8 7 32 32 H 1.09004 * 109.47024 * 300.00310 * 11 10 8 33 33 H 1.09005 * 109.47136 * 59.99926 * 11 10 8 34 34 H 1.08999 * 110.99892 * 324.21015 * 14 12 11 35 35 H 1.08994 * 111.00581 * 88.02019 * 14 12 11 36 36 H 1.08998 * 110.36689 * 155.84776 * 15 14 12 37 37 H 1.08999 * 110.36564 * 278.06124 * 15 14 12 38 38 H 0.96998 * 119.99840 * 179.97438 * 20 19 17 39 39 H 1.09003 * 110.06389 * 241.87053 * 25 16 15 40 40 H 1.08999 * 109.85313 * 120.61066 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 -0.0064 5 7 3.6284 -0.6625 -0.0046 6 1 4.4191 -1.2244 -0.0086 7 6 2.3263 -1.1089 0.0025 8 6 1.8899 -2.5092 0.0072 9 8 0.7027 -2.7766 0.0080 10 7 2.8038 -3.4999 0.0050 11 6 2.3679 -4.8985 0.0102 12 6 3.5933 -5.8146 0.0070 13 1 4.2538 -5.5698 -0.8248 14 6 3.1647 -7.3047 -0.0525 15 6 4.3728 -8.0029 0.6203 16 7 4.7896 -7.0836 1.6948 17 6 5.4772 -7.4368 2.8252 18 1 5.7373 -6.6854 3.5559 19 6 5.8397 -8.7607 3.0318 20 7 5.5223 -9.6766 2.1415 21 14 6.7783 -9.2424 4.5735 22 1 5.9706 -8.9004 5.7717 23 1 7.0436 -10.7034 4.5552 24 1 8.0672 -8.5062 4.6186 25 6 4.3484 -5.7211 1.3496 26 1 -0.3634 0.0028 1.0277 27 1 -0.3633 0.8885 -0.5163 28 1 -0.3633 -0.8914 -0.5114 29 1 2.0137 2.1549 0.0004 30 1 4.4973 1.3253 -0.0126 31 1 3.7501 -3.2868 0.0007 32 1 1.7735 -5.0905 0.9035 33 1 1.7650 -5.0945 -0.8765 34 1 2.2503 -7.4711 0.5171 35 1 3.0457 -7.6361 -1.0839 36 1 4.0713 -8.9633 1.0383 37 1 5.1805 -8.1396 -0.0988 38 1 5.7759 -10.6016 2.2857 39 1 5.2117 -5.0639 1.2445 40 1 3.6823 -5.3405 2.1238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028514913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:27 Heat of formation + Delta-G solvation = 25.920418 kcal Electronic energy + Delta-G solvation = -21091.775378 eV Core-core repulsion = 17907.573781 eV Total energy + Delta-G solvation = -3184.201597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.46474 -39.17024 -37.60010 -34.79166 -32.83251 -32.36100 -30.35739 -29.50759 -28.25956 -26.94215 -25.51912 -23.75068 -22.12096 -20.80702 -20.27154 -19.88680 -19.06591 -18.60085 -16.88648 -15.97570 -15.85312 -15.46007 -14.90533 -14.66712 -14.04656 -13.88678 -13.81660 -13.60626 -13.06685 -12.75762 -12.73197 -12.55894 -12.37072 -11.80956 -11.74019 -11.69430 -11.53466 -10.99260 -10.81952 -10.48227 -10.19632 -10.08066 -9.97508 -9.78808 -9.54685 -9.07859 -8.94772 -8.68481 -8.28585 -6.87982 -5.68953 -3.11027 1.36506 2.57575 2.92768 3.18101 3.35659 3.37818 3.42055 3.43454 4.45186 4.78493 4.82401 5.01696 5.08122 5.19411 5.21354 5.35208 5.48607 5.62073 5.65308 5.77206 5.80572 5.83416 6.00874 6.02372 6.06913 6.24215 6.29891 6.38952 6.48272 6.54344 6.56704 6.67787 6.80733 6.84932 7.18735 7.47079 7.51018 7.57966 7.81951 8.18540 8.32708 9.18306 9.78961 10.43711 11.34894 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028094 B = 0.003419 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.404910 B = 8186.432461 C = 8735.070955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.077 4.077 3 C -0.214 4.214 4 C 0.024 3.976 5 N -0.540 5.540 6 H 0.417 0.583 7 C -0.058 4.058 8 C 0.586 3.414 9 O -0.530 6.530 10 N -0.727 5.727 11 C 0.134 3.866 12 C -0.115 4.115 13 H 0.075 0.925 14 C -0.135 4.135 15 C 0.152 3.848 16 N -0.604 5.604 17 C -0.226 4.226 18 H 0.076 0.924 19 C -0.010 4.010 20 N -0.922 5.922 21 Si 0.915 3.085 22 H -0.284 1.284 23 H -0.289 1.289 24 H -0.286 1.286 25 C 0.141 3.859 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.142 0.858 30 H 0.170 0.830 31 H 0.394 0.606 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.108 0.892 37 H 0.012 0.988 38 H 0.253 0.747 39 H 0.016 0.984 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.390 18.176 -7.001 19.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.238 4.238 4 C -0.112 4.112 5 N -0.136 5.136 6 H 0.254 0.746 7 C -0.170 4.170 8 C 0.373 3.627 9 O -0.407 6.407 10 N -0.377 5.377 11 C 0.011 3.989 12 C -0.135 4.135 13 H 0.093 0.907 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.330 5.330 17 C -0.354 4.354 18 H 0.094 0.906 19 C -0.206 4.206 20 N -0.571 5.571 21 Si 0.746 3.254 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.212 1.212 25 C 0.015 3.985 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.159 0.841 30 H 0.188 0.812 31 H 0.227 0.773 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.030 0.970 38 H 0.064 0.936 39 H 0.034 0.966 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.053 17.605 -6.893 19.570 hybrid contribution 1.667 -0.258 0.772 1.855 sum -3.387 17.347 -6.120 18.704 Atomic orbital electron populations 1.20341 0.89346 1.02796 1.02223 1.19958 0.95906 0.90787 1.01905 1.20796 0.91858 0.98755 1.12424 1.22001 0.99557 0.82986 1.06681 1.41989 1.07270 1.07327 1.57061 0.74565 1.20313 0.83709 0.93710 1.19281 1.17059 0.85953 0.82995 0.76677 1.90804 1.16006 1.83302 1.50595 1.45986 1.09212 1.06973 1.75531 1.21488 0.96893 0.78195 1.02364 1.22454 0.95650 0.96306 0.99047 0.90698 1.23006 1.01079 0.93078 1.00232 1.21928 0.90699 0.96011 0.88635 1.44565 1.65760 1.01400 1.21323 1.19030 1.27488 0.92883 0.95992 0.90619 1.24793 1.01324 0.95802 0.98677 1.69781 1.51246 1.01193 1.34836 0.86145 0.79571 0.77345 0.82388 1.21103 1.21506 1.21240 1.21379 0.95093 0.89220 0.92805 0.91561 0.92144 0.90121 0.84055 0.81246 0.77303 0.90985 0.91390 0.91738 0.92057 0.87481 0.97042 0.93624 0.96631 0.95714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.83 36.01 0.35 -0.67 16 2 C -0.08 -0.93 6.21 -104.16 -0.65 -1.58 16 3 C -0.21 -2.07 10.76 -39.98 -0.43 -2.50 16 4 C 0.02 0.19 11.89 -16.91 -0.20 -0.01 16 5 N -0.54 -4.91 5.99 -9.39 -0.06 -4.96 16 6 H 0.42 2.72 8.19 -40.82 -0.33 2.39 16 7 C -0.06 -0.72 7.06 -81.98 -0.58 -1.30 16 8 C 0.59 8.50 7.79 -12.85 -0.10 8.40 16 9 O -0.53 -9.28 14.80 5.19 0.08 -9.21 16 10 N -0.73 -9.46 5.43 -61.62 -0.33 -9.79 16 11 C 0.13 1.96 5.00 -4.05 -0.02 1.94 16 12 C -0.12 -1.88 2.98 -88.79 -0.26 -2.14 16 13 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 14 C -0.13 -2.47 6.54 -24.58 -0.16 -2.63 16 15 C 0.15 3.63 5.89 -2.53 -0.01 3.62 16 16 N -0.60 -15.31 3.40 -169.84 -0.58 -15.89 16 17 C -0.23 -6.27 10.28 -15.05 -0.15 -6.42 16 18 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 20 N -0.92 -26.73 10.09 55.49 0.56 -26.17 16 21 Si 0.92 21.95 29.55 -169.99 -5.02 16.93 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.14 2.82 6.66 -2.90 -0.02 2.80 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 1.06 6.48 -51.93 -0.34 0.72 16 29 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.17 0.77 8.06 -52.49 -0.42 0.35 16 31 H 0.39 4.22 7.53 -40.82 -0.31 3.91 16 32 H 0.07 1.18 8.00 -51.93 -0.42 0.76 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.11 2.90 5.87 -51.93 -0.30 2.59 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.02 0.51 7.73 -51.93 -0.40 0.11 16 LS Contribution 328.05 15.07 4.94 4.94 Total: -1.00 -33.01 328.05 -8.61 -41.63 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -5.87 Total: 3.39 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -2.33 Total: -0.87 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.41 Total: -56.82 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.08 Total: -9.21 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.01 -8.61 -41.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028514913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.546 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds