Wall clock time and date at job start Mon Mar 30 2020 02:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39834 * 126.45371 * 2 1 4 4 C 1.35461 * 107.86141 * 180.28655 * 3 2 1 5 5 N 1.35532 * 108.87094 * 359.73777 * 4 3 2 6 6 H 0.97001 * 125.67994 * 179.97438 * 5 4 3 7 7 C 1.37661 * 108.64366 * 0.02562 * 5 4 3 8 8 C 1.46674 * 126.23150 * 180.02562 * 7 5 4 9 9 O 1.21695 * 120.00339 * 180.29485 * 8 7 5 10 10 N 1.34784 * 119.99994 * 0.02562 * 8 7 5 11 11 C 1.46499 * 119.99971 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47267 * 180.02562 * 11 10 8 13 13 H 1.09003 * 110.63957 * 305.70126 * 12 11 10 14 14 C 1.55163 * 110.72266 * 182.56083 * 12 11 10 15 15 C 1.54906 * 101.58167 * 206.13578 * 14 12 11 16 16 N 1.47419 * 104.83330 * 37.00646 * 15 14 12 17 17 C 1.36944 * 125.65117 * 155.90670 * 16 15 14 18 18 H 1.07990 * 120.00578 * 179.97438 * 17 16 15 19 19 C 1.38815 * 119.99356 * 359.97438 * 17 16 15 20 20 N 1.31618 * 120.00241 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99620 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.46837 * 60.00058 * 21 19 17 23 23 H 1.48502 * 109.46815 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47033 * 299.99701 * 21 19 17 25 25 C 1.47317 * 108.73874 * 335.71620 * 16 15 14 26 26 H 1.09002 * 109.47192 * 270.15509 * 1 2 3 27 27 H 1.08996 * 109.47031 * 30.15744 * 1 2 3 28 28 H 1.08995 * 109.46792 * 150.15803 * 1 2 3 29 29 H 1.07996 * 126.07254 * 0.02623 * 3 2 1 30 30 H 1.08001 * 125.56256 * 179.70325 * 4 3 2 31 31 H 0.96999 * 120.00044 * 0.02562 * 10 8 7 32 32 H 1.09004 * 109.47024 * 300.00310 * 11 10 8 33 33 H 1.09005 * 109.47136 * 59.99926 * 11 10 8 34 34 H 1.08999 * 110.99892 * 324.21015 * 14 12 11 35 35 H 1.08994 * 111.00581 * 88.02019 * 14 12 11 36 36 H 1.08998 * 110.36689 * 155.84776 * 15 14 12 37 37 H 1.08999 * 110.36564 * 278.06124 * 15 14 12 38 38 H 0.96998 * 119.99840 * 179.97438 * 20 19 17 39 39 H 1.09003 * 110.06389 * 241.87053 * 25 16 15 40 40 H 1.08999 * 109.85313 * 120.61066 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 -0.0064 5 7 3.6284 -0.6625 -0.0046 6 1 4.4191 -1.2244 -0.0086 7 6 2.3263 -1.1089 0.0025 8 6 1.8899 -2.5092 0.0072 9 8 0.7027 -2.7766 0.0080 10 7 2.8038 -3.4999 0.0050 11 6 2.3679 -4.8985 0.0102 12 6 3.5933 -5.8146 0.0070 13 1 4.2538 -5.5698 -0.8248 14 6 3.1647 -7.3047 -0.0525 15 6 4.3728 -8.0029 0.6203 16 7 4.7896 -7.0836 1.6948 17 6 5.4772 -7.4368 2.8252 18 1 5.7373 -6.6854 3.5559 19 6 5.8397 -8.7607 3.0318 20 7 5.5223 -9.6766 2.1415 21 14 6.7783 -9.2424 4.5735 22 1 5.9706 -8.9004 5.7717 23 1 7.0436 -10.7034 4.5552 24 1 8.0672 -8.5062 4.6186 25 6 4.3484 -5.7211 1.3496 26 1 -0.3634 0.0028 1.0277 27 1 -0.3633 0.8885 -0.5163 28 1 -0.3633 -0.8914 -0.5114 29 1 2.0137 2.1549 0.0004 30 1 4.4973 1.3253 -0.0126 31 1 3.7501 -3.2868 0.0007 32 1 1.7735 -5.0905 0.9035 33 1 1.7650 -5.0945 -0.8765 34 1 2.2503 -7.4711 0.5171 35 1 3.0457 -7.6361 -1.0839 36 1 4.0713 -8.9633 1.0383 37 1 5.1805 -8.1396 -0.0988 38 1 5.7759 -10.6016 2.2857 39 1 5.2117 -5.0639 1.2445 40 1 3.6823 -5.3405 2.1238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028514913.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:27 Heat of formation + Delta-G solvation = 3.558056 kcal Electronic energy + Delta-G solvation = -21092.745083 eV Core-core repulsion = 17907.573781 eV Total energy + Delta-G solvation = -3185.171302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.26465 -40.31772 -39.14865 -36.16325 -34.42767 -33.38825 -31.83581 -30.76401 -29.69716 -27.95564 -27.16964 -25.30963 -23.15263 -22.10163 -21.46100 -21.35663 -20.08637 -19.51577 -18.82858 -17.31042 -16.90489 -16.66827 -16.47408 -16.08976 -15.55024 -15.07498 -14.83297 -14.56231 -14.30829 -14.17206 -13.84463 -13.58112 -13.56464 -13.39218 -13.15671 -13.15453 -12.84095 -12.66464 -12.53089 -12.06838 -11.92261 -11.85719 -11.61980 -11.40648 -11.00153 -10.74909 -10.22846 -9.68201 -9.09862 -8.90358 -7.79061 -5.23525 0.47386 1.45302 1.48347 1.54815 1.85279 2.07102 2.28371 2.34794 2.48223 3.30293 3.58979 3.75077 3.92434 3.94396 4.04934 4.27517 4.28279 4.39760 4.42925 4.62564 4.67346 4.77112 4.87429 4.89558 4.90558 5.01254 5.02174 5.10757 5.18321 5.28939 5.37378 5.45363 5.48344 5.64201 5.78859 5.81115 6.00083 6.30260 6.45829 6.62813 7.09452 7.12881 7.77044 8.40453 9.22565 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028094 B = 0.003419 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.404910 B = 8186.432461 C = 8735.070955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.094 4.094 3 C -0.231 4.231 4 C 0.048 3.952 5 N -0.532 5.532 6 H 0.429 0.571 7 C -0.090 4.090 8 C 0.583 3.417 9 O -0.570 6.570 10 N -0.718 5.718 11 C 0.146 3.854 12 C -0.094 4.094 13 H 0.097 0.903 14 C -0.123 4.123 15 C 0.152 3.848 16 N -0.629 5.629 17 C -0.243 4.243 18 H 0.079 0.921 19 C -0.067 4.067 20 N -0.948 5.948 21 Si 0.980 3.020 22 H -0.278 1.278 23 H -0.293 1.293 24 H -0.277 1.277 25 C 0.138 3.862 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.161 0.839 30 H 0.213 0.787 31 H 0.406 0.594 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.071 0.929 37 H -0.009 1.009 38 H 0.247 0.753 39 H 0.030 0.970 40 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.323 20.601 -7.381 22.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.254 4.254 4 C -0.089 4.089 5 N -0.129 5.129 6 H 0.269 0.731 7 C -0.203 4.203 8 C 0.373 3.627 9 O -0.450 6.450 10 N -0.369 5.369 11 C 0.022 3.978 12 C -0.113 4.113 13 H 0.116 0.884 14 C -0.162 4.162 15 C 0.027 3.973 16 N -0.355 5.355 17 C -0.372 4.372 18 H 0.097 0.903 19 C -0.259 4.259 20 N -0.598 5.598 21 Si 0.808 3.192 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.203 1.203 25 C 0.013 3.987 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.179 0.821 30 H 0.230 0.770 31 H 0.242 0.758 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.009 0.991 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -3.958 20.054 -7.279 21.698 hybrid contribution 1.356 -0.912 0.890 1.861 sum -2.602 19.142 -6.389 20.347 Atomic orbital electron populations 1.20307 0.89668 1.02628 1.01971 1.20292 0.96295 0.91894 1.01873 1.21115 0.92194 0.99093 1.13020 1.22720 1.00488 0.82619 1.03045 1.42003 1.06531 1.08030 1.56292 0.73145 1.20042 0.85409 0.92582 1.22254 1.17368 0.85496 0.83995 0.75858 1.90779 1.17606 1.84038 1.52567 1.45811 1.09826 1.06052 1.75168 1.21224 0.95793 0.78827 1.01978 1.22287 0.96039 0.95267 0.97683 0.88445 1.22850 0.98304 0.93798 1.01206 1.21721 0.92107 0.95276 0.88162 1.44887 1.65704 1.03833 1.21072 1.19418 1.27470 0.93244 0.97040 0.90288 1.25638 1.02704 0.95901 1.01690 1.70044 1.52278 1.01038 1.36438 0.85131 0.78519 0.76575 0.78978 1.20455 1.21897 1.20273 1.21552 0.95715 0.86942 0.94523 0.91877 0.90079 0.92435 0.82099 0.77022 0.75807 0.92835 0.90448 0.91959 0.89119 0.91149 0.99071 0.94294 0.95190 0.96324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.00 9.83 71.24 0.70 -1.30 16 2 C -0.09 -2.17 6.21 -19.56 -0.12 -2.30 16 3 C -0.23 -3.81 10.76 22.01 0.24 -3.57 16 4 C 0.05 0.59 11.89 83.48 0.99 1.59 16 5 N -0.53 -8.13 5.99 -183.62 -1.10 -9.23 16 6 H 0.43 4.23 8.19 -92.71 -0.76 3.47 16 7 C -0.09 -2.14 7.06 40.34 0.28 -1.86 16 8 C 0.58 16.63 7.79 86.44 0.67 17.30 16 9 O -0.57 -20.28 14.80 -4.33 -0.06 -20.35 16 10 N -0.72 -17.62 5.43 -467.08 -2.53 -20.16 16 11 C 0.15 4.07 5.00 86.38 0.43 4.50 16 12 C -0.09 -2.88 2.98 -9.61 -0.03 -2.91 16 13 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 14 C -0.12 -4.36 6.54 31.99 0.21 -4.15 16 15 C 0.15 7.40 5.89 86.86 0.51 7.91 16 16 N -0.63 -32.06 3.40 -691.26 -2.35 -34.41 16 17 C -0.24 -13.61 10.28 84.03 0.86 -12.74 16 18 H 0.08 4.24 7.83 -2.92 -0.02 4.21 16 19 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 20 N -0.95 -56.46 10.09 21.65 0.22 -56.24 16 21 Si 0.98 45.51 29.55 68.60 2.03 47.54 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 C 0.14 5.37 6.66 86.67 0.58 5.95 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.06 1.56 6.48 -2.39 -0.02 1.54 16 29 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 30 H 0.21 0.72 8.06 -2.91 -0.02 0.70 16 31 H 0.41 7.77 7.53 -92.71 -0.70 7.07 16 32 H 0.05 1.72 8.00 -2.38 -0.02 1.70 16 33 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.06 2.25 8.05 -2.39 -0.02 2.23 16 35 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.07 3.95 5.87 -2.39 -0.01 3.94 16 37 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 39 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.02 0.76 7.73 -2.39 -0.02 0.74 16 Total: -1.00 -73.94 328.05 1.59 -72.35 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -0.40 Total: 15.40 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 5.80 Total: 5.10 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -5.77 Total: -120.04 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.06 Total: -20.35 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -73.94 1.59 -72.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028514913.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.909 kcal (2) G-P(sol) polarization free energy of solvation -73.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds