Wall clock time and date at job start Mon Mar 30 2020 02:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34484 * 126.83320 * 2 1 4 4 N 1.36447 * 108.86005 * 179.97438 * 3 2 1 5 5 H 0.96998 * 124.85574 * 180.02562 * 4 3 2 6 6 C 1.34658 * 110.29373 * 359.97438 * 4 3 2 7 7 C 1.36775 * 108.39979 * 359.75427 * 6 4 3 8 8 C 1.47264 * 126.94585 * 180.24253 * 7 6 4 9 9 O 1.21622 * 120.00147 * 180.15080 * 8 7 6 10 10 N 1.34779 * 119.99795 * 0.15620 * 8 7 6 11 11 C 1.46496 * 119.99908 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47145 * 179.97438 * 11 10 8 13 13 H 1.08994 * 110.88407 * 54.30179 * 12 11 10 14 14 C 1.55162 * 111.00300 * 178.17780 * 12 11 10 15 15 C 1.54326 * 102.93898 * 153.57838 * 14 12 11 16 16 N 1.47027 * 107.26895 * 337.80380 * 15 14 12 17 17 C 1.36936 * 125.64205 * 178.97556 * 16 15 14 18 18 H 1.08003 * 119.99795 * 179.97438 * 17 16 15 19 19 C 1.38808 * 120.00144 * 359.97438 * 17 16 15 20 20 N 1.31618 * 120.00352 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99915 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47043 * 59.99850 * 21 19 17 23 23 H 1.48495 * 109.47082 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46851 * 300.00179 * 21 19 17 25 25 C 1.47463 * 108.72434 * 358.97746 * 16 15 14 26 26 H 1.09002 * 109.47152 * 90.02765 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.02866 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.02846 * 1 2 3 29 29 H 1.08002 * 125.57078 * 359.93357 * 3 2 1 30 30 H 1.08004 * 125.80548 * 180.02562 * 6 4 3 31 31 H 0.97006 * 120.00086 * 359.97438 * 10 8 7 32 32 H 1.09006 * 109.47025 * 299.99743 * 11 10 8 33 33 H 1.08994 * 109.47005 * 59.99676 * 11 10 8 34 34 H 1.09002 * 110.71988 * 271.94115 * 14 12 11 35 35 H 1.08995 * 110.71675 * 35.03620 * 14 12 11 36 36 H 1.08996 * 109.88144 * 97.22714 * 15 14 12 37 37 H 1.09006 * 109.87851 * 218.23929 * 15 14 12 38 38 H 0.97000 * 120.00105 * 179.97438 * 20 19 17 39 39 H 1.08992 * 110.35363 * 265.24787 * 25 16 15 40 40 H 1.09004 * 110.40286 * 142.91367 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6554 0.0006 5 1 4.3840 1.2414 0.0011 6 6 3.6657 -0.6901 0.0015 7 6 2.3864 -1.1740 0.0071 8 6 1.9749 -2.5880 0.0150 9 8 0.7937 -2.8776 0.0167 10 7 2.9074 -3.5611 0.0205 11 6 2.4981 -4.9677 0.0289 12 6 3.7407 -5.8605 0.0332 13 1 4.4035 -5.5998 0.8582 14 6 3.3477 -7.3605 0.0882 15 6 4.5500 -8.0576 -0.5827 16 7 5.2232 -7.0553 -1.4217 17 6 6.3495 -7.2683 -2.1708 18 1 6.7688 -6.4635 -2.7564 19 6 6.9524 -8.5186 -2.1775 20 7 6.4412 -9.4996 -1.4642 21 14 8.4885 -8.8094 -3.2000 22 1 9.5660 -7.8940 -2.7459 23 1 8.9327 -10.2170 -3.0368 24 1 8.1876 -8.5485 -4.6305 25 6 4.4850 -5.7826 -1.3231 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 0.8903 0.5134 28 1 -0.3633 -0.8898 0.5143 29 1 1.9868 2.1059 -0.0010 30 1 4.5664 -1.2860 0.0025 31 1 3.8495 -3.3301 0.0189 32 1 1.9035 -5.1678 0.9203 33 1 1.9030 -5.1782 -0.8596 34 1 3.2362 -7.6923 1.1205 35 1 2.4314 -7.5398 -0.4742 36 1 5.2373 -8.4256 0.1790 37 1 4.2014 -8.8864 -1.1989 38 1 6.8623 -10.3734 -1.4692 39 1 3.7719 -5.6935 -2.1426 40 1 5.1771 -4.9404 -1.3282 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028982483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:04 Heat of formation + Delta-G solvation = 24.845270 kcal Electronic energy + Delta-G solvation = -20999.176507 eV Core-core repulsion = 17814.928289 eV Total energy + Delta-G solvation = -3184.248219 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.30143 -39.04179 -37.48623 -34.51675 -32.54006 -32.48997 -30.48482 -29.40114 -28.03325 -26.65337 -25.50652 -23.84057 -22.37673 -20.28093 -19.96529 -19.79299 -18.99478 -18.43716 -16.83359 -16.13753 -15.76224 -15.19120 -14.70113 -14.57037 -14.13897 -13.99095 -13.73725 -13.45420 -13.02783 -12.88462 -12.74565 -12.43092 -12.29471 -11.95479 -11.69954 -11.48691 -11.31750 -10.89022 -10.77056 -10.34209 -10.14640 -9.97597 -9.83693 -9.64244 -9.57170 -8.93013 -8.62465 -8.58454 -8.43585 -6.81507 -5.69887 -3.03391 1.69314 2.26983 3.01866 3.40381 3.44601 3.46135 3.48020 3.67107 4.50237 4.68844 4.88466 4.96243 5.15757 5.28521 5.30549 5.44643 5.51282 5.58393 5.68358 5.74536 5.79629 5.95723 5.99065 6.12910 6.15010 6.19041 6.39664 6.52417 6.58285 6.59697 6.66341 6.74543 6.77096 6.96382 7.23953 7.57089 7.65959 7.78304 7.84483 8.27804 8.51627 9.23533 9.84042 10.50618 11.41778 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.003429 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.876759 B = 8162.616100 C = 8963.565997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.110 4.110 3 C -0.030 4.030 4 N -0.551 5.551 5 H 0.417 0.583 6 C 0.047 3.953 7 C -0.225 4.225 8 C 0.586 3.414 9 O -0.548 6.548 10 N -0.725 5.725 11 C 0.135 3.865 12 C -0.117 4.117 13 H 0.078 0.922 14 C -0.135 4.135 15 C 0.178 3.822 16 N -0.607 5.607 17 C -0.230 4.230 18 H 0.076 0.924 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.912 3.088 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.143 3.857 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.167 0.833 30 H 0.173 0.827 31 H 0.397 0.603 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.253 0.747 39 H 0.020 0.980 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 19.792 5.246 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C -0.157 4.157 4 N -0.145 5.145 5 H 0.253 0.747 6 C -0.089 4.089 7 C -0.236 4.236 8 C 0.374 3.626 9 O -0.427 6.427 10 N -0.376 5.376 11 C 0.011 3.989 12 C -0.137 4.137 13 H 0.097 0.903 14 C -0.174 4.174 15 C 0.053 3.947 16 N -0.333 5.333 17 C -0.358 4.358 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.016 3.984 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.185 0.815 30 H 0.190 0.810 31 H 0.231 0.769 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.037 0.963 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.007 19.465 5.198 21.330 hybrid contribution 1.834 0.141 -0.578 1.928 sum -5.173 19.605 4.619 20.796 Atomic orbital electron populations 1.20192 0.89382 1.02497 1.01960 1.20569 0.95646 0.90398 1.05059 1.21557 0.82486 0.99152 1.12545 1.41480 1.08279 1.06710 1.57997 0.74677 1.21990 0.98701 0.83852 1.04382 1.20449 0.92643 0.93011 1.17465 1.17397 0.85434 0.83983 0.75786 1.90726 1.17276 1.83819 1.50888 1.45914 1.09473 1.06499 1.75710 1.21354 0.96797 0.78776 1.01945 1.22609 0.95604 0.95636 0.99859 0.90336 1.22855 1.00295 0.93726 1.00507 1.21137 0.89622 0.90654 0.93302 1.44489 1.29058 1.05944 1.53831 1.19007 1.00588 0.95968 1.20223 0.90580 1.24803 0.99442 0.95992 1.00235 1.69956 1.41088 1.02081 1.43825 0.86204 0.82755 0.76957 0.79859 1.21222 1.21597 1.21193 1.21573 0.93613 0.90096 0.93069 0.91861 0.92542 0.90247 0.81538 0.80993 0.76887 0.91763 0.91436 0.92015 0.92178 0.93614 0.93939 0.93712 0.96261 0.94766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 9.98 36.01 0.36 -0.55 16 2 C -0.11 -1.28 6.35 -102.54 -0.65 -1.94 16 3 C -0.03 -0.25 11.82 -16.82 -0.20 -0.45 16 4 N -0.55 -3.90 5.90 -12.84 -0.08 -3.98 16 5 H 0.42 1.47 8.96 -40.82 -0.37 1.11 16 6 C 0.05 0.43 11.40 -16.84 -0.19 0.24 16 7 C -0.23 -2.85 6.29 -103.35 -0.65 -3.50 16 8 C 0.59 8.92 7.81 -12.59 -0.10 8.82 16 9 O -0.55 -10.14 15.31 5.26 0.08 -10.06 16 10 N -0.73 -9.93 5.44 -61.43 -0.33 -10.26 16 11 C 0.13 2.04 5.12 -4.04 -0.02 2.02 16 12 C -0.12 -1.97 3.07 -88.47 -0.27 -2.25 16 13 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 14 C -0.13 -2.50 6.42 -24.89 -0.16 -2.66 16 15 C 0.18 4.32 5.37 -3.06 -0.02 4.30 16 16 N -0.61 -15.49 3.40 -170.04 -0.58 -16.07 16 17 C -0.23 -6.41 10.28 -15.06 -0.15 -6.56 16 18 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 19 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 20 N -0.92 -27.20 10.31 55.49 0.57 -26.62 16 21 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.14 2.88 6.56 -2.51 -0.02 2.87 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.05 6.84 -51.93 -0.36 0.69 16 29 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.17 1.11 7.45 -52.48 -0.39 0.72 16 31 H 0.40 4.56 7.38 -40.82 -0.30 4.26 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.11 8.03 -51.93 -0.42 0.69 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 36 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 37 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 38 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.02 0.41 7.95 -51.93 -0.41 -0.01 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 329.79 15.07 4.97 4.97 Total: -1.00 -34.69 329.79 -8.49 -43.18 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.94 Total: 1.79 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.17 Total: 0.01 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.42 Total: -56.93 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.69 -8.49 -43.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028982483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.025 kcal (2) G-P(sol) polarization free energy of solvation -34.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds