Wall clock time and date at job start Mon Mar 30 2020 02:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34484 * 126.83320 * 2 1 4 4 N 1.36447 * 108.86005 * 179.97438 * 3 2 1 5 5 H 0.96998 * 124.85574 * 180.02562 * 4 3 2 6 6 C 1.34658 * 110.29373 * 359.97438 * 4 3 2 7 7 C 1.36775 * 108.39979 * 359.75427 * 6 4 3 8 8 C 1.47264 * 126.94585 * 180.24253 * 7 6 4 9 9 O 1.21622 * 120.00147 * 180.15080 * 8 7 6 10 10 N 1.34779 * 119.99795 * 0.15620 * 8 7 6 11 11 C 1.46496 * 119.99908 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47145 * 179.97438 * 11 10 8 13 13 H 1.08994 * 110.88407 * 54.30179 * 12 11 10 14 14 C 1.55162 * 111.00300 * 178.17780 * 12 11 10 15 15 C 1.54326 * 102.93898 * 153.57838 * 14 12 11 16 16 N 1.47027 * 107.26895 * 337.80380 * 15 14 12 17 17 C 1.36936 * 125.64205 * 178.97556 * 16 15 14 18 18 H 1.08003 * 119.99795 * 179.97438 * 17 16 15 19 19 C 1.38808 * 120.00144 * 359.97438 * 17 16 15 20 20 N 1.31618 * 120.00352 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99915 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47043 * 59.99850 * 21 19 17 23 23 H 1.48495 * 109.47082 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46851 * 300.00179 * 21 19 17 25 25 C 1.47463 * 108.72434 * 358.97746 * 16 15 14 26 26 H 1.09002 * 109.47152 * 90.02765 * 1 2 3 27 27 H 1.09001 * 109.46980 * 330.02866 * 1 2 3 28 28 H 1.09004 * 109.47113 * 210.02846 * 1 2 3 29 29 H 1.08002 * 125.57078 * 359.93357 * 3 2 1 30 30 H 1.08004 * 125.80548 * 180.02562 * 6 4 3 31 31 H 0.97006 * 120.00086 * 359.97438 * 10 8 7 32 32 H 1.09006 * 109.47025 * 299.99743 * 11 10 8 33 33 H 1.08994 * 109.47005 * 59.99676 * 11 10 8 34 34 H 1.09002 * 110.71988 * 271.94115 * 14 12 11 35 35 H 1.08995 * 110.71675 * 35.03620 * 14 12 11 36 36 H 1.08996 * 109.88144 * 97.22714 * 15 14 12 37 37 H 1.09006 * 109.87851 * 218.23929 * 15 14 12 38 38 H 0.97000 * 120.00105 * 179.97438 * 20 19 17 39 39 H 1.08992 * 110.35363 * 265.24787 * 25 16 15 40 40 H 1.09004 * 110.40286 * 142.91367 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6554 0.0006 5 1 4.3840 1.2414 0.0011 6 6 3.6657 -0.6901 0.0015 7 6 2.3864 -1.1740 0.0071 8 6 1.9749 -2.5880 0.0150 9 8 0.7937 -2.8776 0.0167 10 7 2.9074 -3.5611 0.0205 11 6 2.4981 -4.9677 0.0289 12 6 3.7407 -5.8605 0.0332 13 1 4.4035 -5.5998 0.8582 14 6 3.3477 -7.3605 0.0882 15 6 4.5500 -8.0576 -0.5827 16 7 5.2232 -7.0553 -1.4217 17 6 6.3495 -7.2683 -2.1708 18 1 6.7688 -6.4635 -2.7564 19 6 6.9524 -8.5186 -2.1775 20 7 6.4412 -9.4996 -1.4642 21 14 8.4885 -8.8094 -3.2000 22 1 9.5660 -7.8940 -2.7459 23 1 8.9327 -10.2170 -3.0368 24 1 8.1876 -8.5485 -4.6305 25 6 4.4850 -5.7826 -1.3231 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3633 0.8903 0.5134 28 1 -0.3633 -0.8898 0.5143 29 1 1.9868 2.1059 -0.0010 30 1 4.5664 -1.2860 0.0025 31 1 3.8495 -3.3301 0.0189 32 1 1.9035 -5.1678 0.9203 33 1 1.9030 -5.1782 -0.8596 34 1 3.2362 -7.6923 1.1205 35 1 2.4314 -7.5398 -0.4742 36 1 5.2373 -8.4256 0.1790 37 1 4.2014 -8.8864 -1.1989 38 1 6.8623 -10.3734 -1.4692 39 1 3.7719 -5.6935 -2.1426 40 1 5.1771 -4.9404 -1.3282 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028982483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:03 Heat of formation + Delta-G solvation = 0.664458 kcal Electronic energy + Delta-G solvation = -21000.225066 eV Core-core repulsion = 17814.928289 eV Total energy + Delta-G solvation = -3185.296777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.03474 -40.24488 -39.08132 -35.95732 -34.29319 -33.28867 -31.89888 -30.82440 -29.53604 -27.40070 -27.24051 -25.41188 -23.48220 -21.96598 -21.39232 -20.74248 -20.05769 -19.15206 -18.76791 -17.23926 -17.10716 -16.61594 -16.30997 -15.88503 -15.48635 -15.14880 -14.79387 -14.46064 -14.37434 -13.98721 -13.87566 -13.78555 -13.54563 -13.38059 -13.23222 -12.98941 -12.75769 -12.58818 -12.27293 -12.05791 -11.87047 -11.82650 -11.51790 -11.43960 -10.81758 -10.68224 -10.06518 -9.48059 -9.13538 -8.88351 -7.83228 -5.18983 0.83841 1.46626 1.50224 1.54311 1.56465 2.29811 2.50959 2.53667 2.64169 3.34858 3.63597 3.82787 4.03591 4.05328 4.06414 4.14808 4.34843 4.46935 4.51663 4.64668 4.70592 4.78438 4.86547 4.93583 4.95236 4.96776 5.08628 5.10404 5.20072 5.36031 5.41859 5.46931 5.57225 5.69303 5.79692 5.87571 6.01040 6.21549 6.69710 6.77478 7.11775 7.42316 7.79745 8.44615 9.27197 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.003429 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.876759 B = 8162.616100 C = 8963.565997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.152 4.152 3 C -0.010 4.010 4 N -0.533 5.533 5 H 0.438 0.562 6 C 0.067 3.933 7 C -0.270 4.270 8 C 0.581 3.419 9 O -0.593 6.593 10 N -0.717 5.717 11 C 0.147 3.853 12 C -0.094 4.094 13 H 0.091 0.909 14 C -0.124 4.124 15 C 0.184 3.816 16 N -0.629 5.629 17 C -0.244 4.244 18 H 0.085 0.915 19 C -0.069 4.069 20 N -0.953 5.953 21 Si 0.980 3.020 22 H -0.273 1.273 23 H -0.296 1.296 24 H -0.279 1.279 25 C 0.139 3.861 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.047 0.953 29 H 0.202 0.798 30 H 0.201 0.799 31 H 0.410 0.590 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.014 0.986 37 H 0.003 0.997 38 H 0.246 0.754 39 H 0.015 0.985 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.157 22.723 5.481 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.158 4.158 3 C -0.138 4.138 4 N -0.128 5.128 5 H 0.278 0.722 6 C -0.072 4.072 7 C -0.281 4.281 8 C 0.372 3.628 9 O -0.475 6.475 10 N -0.368 5.368 11 C 0.023 3.977 12 C -0.113 4.113 13 H 0.110 0.890 14 C -0.163 4.163 15 C 0.059 3.941 16 N -0.356 5.356 17 C -0.373 4.373 18 H 0.102 0.898 19 C -0.261 4.261 20 N -0.602 5.602 21 Si 0.808 3.192 22 H -0.199 1.199 23 H -0.222 1.222 24 H -0.205 1.205 25 C 0.014 3.986 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.217 0.783 31 H 0.246 0.754 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.032 0.968 37 H 0.021 0.979 38 H 0.055 0.945 39 H 0.033 0.967 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.740 22.465 5.432 23.814 hybrid contribution 1.455 -0.691 -0.672 1.745 sum -4.285 21.774 4.760 22.696 Atomic orbital electron populations 1.20105 0.89907 1.02118 1.01463 1.20823 0.96027 0.91376 1.07591 1.21984 0.82342 0.99811 1.09690 1.41546 1.08820 1.06373 1.56106 0.72195 1.22309 0.98259 0.84798 1.01833 1.20429 0.94691 0.91832 1.21123 1.17856 0.84894 0.85252 0.74795 1.90696 1.19075 1.84602 1.53110 1.45765 1.10058 1.05614 1.75365 1.21096 0.95574 0.79400 1.01651 1.22406 0.95964 0.94712 0.98247 0.89024 1.22726 0.97894 0.94296 1.01335 1.20904 0.90891 0.90362 0.91983 1.44822 1.29011 1.08099 1.53625 1.19460 1.01300 0.96276 1.20233 0.89760 1.25682 1.02718 0.95927 1.01803 1.70192 1.42424 1.02140 1.45435 0.85139 0.79270 0.76438 0.78401 1.19893 1.22247 1.20488 1.21743 0.93663 0.88470 0.94707 0.92467 0.90106 0.93360 0.78138 0.78261 0.75420 0.91157 0.92788 0.89609 0.91290 0.96811 0.97922 0.94469 0.96719 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.73 9.98 71.24 0.71 -1.02 16 2 C -0.15 -3.34 6.35 -18.51 -0.12 -3.45 16 3 C -0.01 -0.14 11.82 83.12 0.98 0.85 16 4 N -0.53 -5.40 5.90 -194.55 -1.15 -6.55 16 5 H 0.44 1.01 8.96 -92.71 -0.83 0.18 16 6 C 0.07 1.00 11.40 83.92 0.96 1.96 16 7 C -0.27 -6.49 6.29 -19.04 -0.12 -6.61 16 8 C 0.58 17.49 7.81 86.62 0.68 18.17 16 9 O -0.59 -22.49 15.31 -4.10 -0.06 -22.56 16 10 N -0.72 -18.55 5.44 -466.53 -2.54 -21.08 16 11 C 0.15 4.26 5.12 86.38 0.44 4.70 16 12 C -0.09 -2.99 3.07 -9.40 -0.03 -3.02 16 13 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 14 C -0.12 -4.48 6.42 31.79 0.20 -4.28 16 15 C 0.18 9.16 5.37 86.73 0.47 9.63 16 16 N -0.63 -32.29 3.40 -691.89 -2.35 -34.64 16 17 C -0.24 -13.64 10.28 84.03 0.86 -12.77 16 18 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 19 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 20 N -0.95 -57.91 10.31 21.65 0.22 -57.69 16 21 Si 0.98 45.64 29.55 68.60 2.03 47.66 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 23 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 25 C 0.14 5.46 6.56 86.85 0.57 6.03 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 1.34 6.84 -2.38 -0.02 1.33 16 29 H 0.20 1.22 8.06 -2.91 -0.02 1.19 16 30 H 0.20 1.74 7.45 -2.91 -0.02 1.72 16 31 H 0.41 8.36 7.38 -92.70 -0.68 7.68 16 32 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.05 1.74 8.03 -2.39 -0.02 1.72 16 34 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.07 2.38 8.04 -2.39 -0.02 2.37 16 36 H 0.01 0.76 7.38 -2.39 -0.02 0.74 16 37 H 0.00 0.14 7.50 -2.38 -0.02 0.13 16 38 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 39 H 0.02 0.61 7.95 -2.39 -0.02 0.59 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -78.80 329.79 1.77 -77.03 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -0.46 Total: 11.11 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 6.07 Total: 6.71 kcal Atomic # 7 Polarization: -114.15 SS G_CDS: -5.81 Total: -119.96 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.06 Total: -22.56 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -78.80 1.77 -77.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028982483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.696 kcal (2) G-P(sol) polarization free energy of solvation -78.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds