Wall clock time and date at job start Mon Mar 30 2020 02:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34490 * 126.83541 * 2 1 4 4 N 1.36454 * 108.85870 * 180.25145 * 3 2 1 5 5 H 0.97000 * 124.85674 * 179.77185 * 4 3 2 6 6 C 1.34668 * 110.29385 * 359.75034 * 4 3 2 7 7 C 1.36763 * 108.39660 * 359.97438 * 6 4 3 8 8 C 1.47263 * 126.94189 * 179.97438 * 7 6 4 9 9 O 1.21624 * 120.00342 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99963 * 0.02760 * 8 7 6 11 11 C 1.46498 * 120.00246 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47108 * 180.02562 * 11 10 8 13 13 H 1.09002 * 110.77651 * 303.20678 * 12 11 10 14 14 C 1.55160 * 110.71864 * 179.97438 * 12 11 10 15 15 C 1.54910 * 101.58122 * 206.13184 * 14 12 11 16 16 N 1.47425 * 104.83231 * 37.00939 * 15 14 12 17 17 C 1.36933 * 125.64542 * 156.13438 * 16 15 14 18 18 H 1.08005 * 119.99541 * 179.69129 * 17 16 15 19 19 C 1.38813 * 120.00564 * 359.69503 * 17 16 15 20 20 N 1.31616 * 119.99514 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00305 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47103 * 60.00082 * 21 19 17 23 23 H 1.48502 * 109.47327 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47083 * 299.99999 * 21 19 17 25 25 C 1.47026 * 108.70074 * 335.87083 * 16 15 14 26 26 H 1.08997 * 109.47324 * 270.15204 * 1 2 3 27 27 H 1.09005 * 109.47136 * 30.14850 * 1 2 3 28 28 H 1.08997 * 109.47386 * 150.14910 * 1 2 3 29 29 H 1.08002 * 125.57418 * 359.96169 * 3 2 1 30 30 H 1.07997 * 125.79391 * 179.97438 * 6 4 3 31 31 H 0.96999 * 119.99460 * 359.97438 * 10 8 7 32 32 H 1.09003 * 109.47365 * 59.99474 * 11 10 8 33 33 H 1.09000 * 109.46701 * 299.99851 * 11 10 8 34 34 H 1.08991 * 111.00600 * 324.20802 * 14 12 11 35 35 H 1.09004 * 111.00084 * 88.02248 * 14 12 11 36 36 H 1.09001 * 110.36852 * 278.17238 * 15 14 12 37 37 H 1.08998 * 110.36449 * 155.84885 * 15 14 12 38 38 H 0.97002 * 119.99999 * 179.97438 * 20 19 17 39 39 H 1.09004 * 109.87531 * 120.47707 * 25 16 15 40 40 H 1.08996 * 109.88343 * 241.48426 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0057 5 1 4.3841 1.2413 -0.0100 6 6 3.6656 -0.6903 -0.0039 7 6 2.3864 -1.1740 0.0036 8 6 1.9749 -2.5880 0.0075 9 8 0.7936 -2.8776 0.0138 10 7 2.9073 -3.5612 0.0040 11 6 2.4979 -4.9679 0.0072 12 6 3.7405 -5.8606 0.0029 13 1 4.3765 -5.6338 -0.8527 14 6 3.3395 -7.3595 0.0069 15 6 4.5783 -8.0110 0.6706 16 7 5.0052 -7.0469 1.7009 17 6 5.7327 -7.3466 2.8217 18 1 6.0009 -6.5644 3.5165 19 6 6.1257 -8.6555 3.0648 20 7 5.7985 -9.6088 2.2182 21 14 7.1187 -9.0641 4.5932 22 1 6.3411 -8.6925 5.8027 23 1 7.4092 -10.5202 4.6203 24 1 8.3946 -8.3046 4.5723 25 6 4.5260 -5.7095 1.3225 26 1 -0.3634 0.0027 1.0276 27 1 -0.3634 0.8887 -0.5162 28 1 -0.3634 -0.8913 -0.5115 29 1 1.9868 2.1059 -0.0006 30 1 4.5664 -1.2860 -0.0078 31 1 3.8493 -3.3302 -0.0014 32 1 1.8988 -5.1740 -0.8797 33 1 1.9073 -5.1723 0.9002 34 1 2.4439 -7.5227 0.6062 35 1 3.2000 -7.7292 -1.0090 36 1 5.3700 -8.1563 -0.0643 37 1 4.3066 -8.9615 1.1298 38 1 6.0734 -10.5234 2.3879 39 1 3.8716 -5.3164 2.1007 40 1 5.3733 -5.0393 1.1776 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028982484.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:07 Heat of formation + Delta-G solvation = 26.201264 kcal Electronic energy + Delta-G solvation = -21026.446999 eV Core-core repulsion = 17842.257580 eV Total energy + Delta-G solvation = -3184.189418 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.29880 -39.04632 -37.48883 -34.51368 -32.54104 -32.49281 -30.47931 -29.41190 -27.99353 -26.65067 -25.52551 -23.83392 -22.37491 -20.38308 -19.90014 -19.70775 -18.98394 -18.43409 -16.85902 -16.16484 -15.73167 -15.18993 -14.79656 -14.60634 -14.10632 -13.98956 -13.72767 -13.47209 -13.05431 -12.74368 -12.65652 -12.47016 -12.42337 -11.72806 -11.65091 -11.46499 -11.43143 -10.94055 -10.77775 -10.37004 -10.13391 -9.97845 -9.84122 -9.64462 -9.44664 -8.92457 -8.63526 -8.61899 -8.43426 -6.81664 -5.63856 -3.05571 1.69525 2.27245 3.01800 3.41030 3.45116 3.46613 3.48692 3.67835 4.49968 4.68601 4.88473 4.96455 5.16114 5.29412 5.33363 5.43145 5.51380 5.55867 5.68612 5.75714 5.80361 5.94913 5.99800 6.14719 6.18253 6.22033 6.38806 6.56857 6.61229 6.63738 6.66860 6.74704 6.80160 6.95598 7.24004 7.53449 7.63818 7.78855 7.87762 8.38467 8.52450 9.23681 9.84754 10.49967 11.39966 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027432 B = 0.003411 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.462618 B = 8206.326888 C = 8793.175962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.110 4.110 3 C -0.030 4.030 4 N -0.551 5.551 5 H 0.417 0.583 6 C 0.047 3.953 7 C -0.225 4.225 8 C 0.585 3.415 9 O -0.548 6.548 10 N -0.725 5.725 11 C 0.135 3.865 12 C -0.114 4.114 13 H 0.075 0.925 14 C -0.135 4.135 15 C 0.152 3.848 16 N -0.605 5.605 17 C -0.223 4.223 18 H 0.076 0.924 19 C -0.012 4.012 20 N -0.923 5.923 21 Si 0.915 3.085 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.142 3.858 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.167 0.833 30 H 0.173 0.827 31 H 0.397 0.603 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.011 0.989 37 H 0.107 0.893 38 H 0.252 0.748 39 H 0.025 0.975 40 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.622 19.700 -7.170 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C -0.157 4.157 4 N -0.145 5.145 5 H 0.253 0.747 6 C -0.090 4.090 7 C -0.235 4.235 8 C 0.374 3.626 9 O -0.426 6.426 10 N -0.376 5.376 11 C 0.012 3.988 12 C -0.134 4.134 13 H 0.093 0.907 14 C -0.175 4.175 15 C 0.027 3.973 16 N -0.331 5.331 17 C -0.352 4.352 18 H 0.094 0.906 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.213 1.213 25 C 0.016 3.984 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.185 0.815 30 H 0.190 0.810 31 H 0.231 0.769 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.029 0.971 37 H 0.124 0.876 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -5.291 19.380 -7.053 21.292 hybrid contribution 1.613 0.224 0.766 1.799 sum -3.679 19.604 -6.288 20.914 Atomic orbital electron populations 1.20187 0.89374 1.02484 1.01977 1.20572 0.95653 0.90393 1.05041 1.21559 0.82480 0.99149 1.12539 1.41482 1.08275 1.06698 1.58036 0.74691 1.21977 0.98681 0.83849 1.04457 1.20452 0.92648 0.93017 1.17396 1.17401 0.85447 0.83983 0.75805 1.90729 1.17270 1.83815 1.50828 1.45917 1.09436 1.06534 1.75736 1.21403 0.96751 0.78662 1.02020 1.22437 0.95571 0.96317 0.99045 0.90676 1.23005 1.01057 0.93204 1.00184 1.21934 0.90245 0.95622 0.89496 1.44506 1.63115 1.01717 1.23744 1.19032 1.25389 0.93106 0.97652 0.90625 1.24786 1.01297 0.95740 0.98870 1.69787 1.50600 1.00348 1.36379 0.86151 0.79783 0.77126 0.82421 1.21150 1.21559 1.21273 1.21317 0.94832 0.89375 0.92907 0.91843 0.92538 0.90265 0.81531 0.81027 0.76947 0.91748 0.91325 0.91808 0.92137 0.97082 0.87551 0.93685 0.95745 0.96584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 9.97 36.00 0.36 -0.57 16 2 C -0.11 -1.30 6.35 -102.54 -0.65 -1.95 16 3 C -0.03 -0.25 11.82 -16.82 -0.20 -0.45 16 4 N -0.55 -3.92 5.90 -12.84 -0.08 -4.00 16 5 H 0.42 1.47 8.96 -40.82 -0.37 1.10 16 6 C 0.05 0.43 11.40 -16.84 -0.19 0.24 16 7 C -0.22 -2.88 6.29 -103.35 -0.65 -3.53 16 8 C 0.59 9.05 7.81 -12.59 -0.10 8.95 16 9 O -0.55 -10.29 15.32 5.26 0.08 -10.21 16 10 N -0.73 -10.10 5.39 -61.44 -0.33 -10.43 16 11 C 0.14 2.10 4.99 -4.04 -0.02 2.08 16 12 C -0.11 -1.94 3.02 -88.79 -0.27 -2.20 16 13 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 14 C -0.14 -2.55 6.53 -24.58 -0.16 -2.71 16 15 C 0.15 3.69 5.89 -2.53 -0.01 3.67 16 16 N -0.60 -15.56 3.39 -170.07 -0.58 -16.14 16 17 C -0.22 -6.27 10.27 -15.06 -0.15 -6.43 16 18 H 0.08 2.05 7.83 -52.48 -0.41 1.63 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -27.01 10.09 55.49 0.56 -26.45 16 21 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.14 2.91 6.52 -3.07 -0.02 2.89 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 1.06 6.86 -51.93 -0.36 0.70 16 29 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 30 H 0.17 1.11 7.45 -52.49 -0.39 0.72 16 31 H 0.40 4.59 7.27 -40.82 -0.30 4.30 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.18 8.06 -51.93 -0.42 0.77 16 34 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.11 2.92 5.87 -51.93 -0.30 2.61 16 38 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.02 0.52 7.77 -51.93 -0.40 0.11 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 LS Contribution 328.81 15.07 4.96 4.96 Total: -1.00 -34.55 328.81 -8.46 -43.01 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.88 Total: 2.57 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -2.17 Total: -0.43 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.42 Total: -57.01 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.55 -8.46 -43.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028982484.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.209 kcal (2) G-P(sol) polarization free energy of solvation -34.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds