Wall clock time and date at job start Mon Mar 30 2020 02:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.34490 * 126.83541 * 2 1 4 4 N 1.36454 * 108.85870 * 180.25145 * 3 2 1 5 5 H 0.97000 * 124.85674 * 179.77185 * 4 3 2 6 6 C 1.34668 * 110.29385 * 359.75034 * 4 3 2 7 7 C 1.36763 * 108.39660 * 359.97438 * 6 4 3 8 8 C 1.47263 * 126.94189 * 179.97438 * 7 6 4 9 9 O 1.21624 * 120.00342 * 180.02562 * 8 7 6 10 10 N 1.34780 * 119.99963 * 0.02760 * 8 7 6 11 11 C 1.46498 * 120.00246 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47108 * 180.02562 * 11 10 8 13 13 H 1.09002 * 110.77651 * 303.20678 * 12 11 10 14 14 C 1.55160 * 110.71864 * 179.97438 * 12 11 10 15 15 C 1.54910 * 101.58122 * 206.13184 * 14 12 11 16 16 N 1.47425 * 104.83231 * 37.00939 * 15 14 12 17 17 C 1.36933 * 125.64542 * 156.13438 * 16 15 14 18 18 H 1.08005 * 119.99541 * 179.69129 * 17 16 15 19 19 C 1.38813 * 120.00564 * 359.69503 * 17 16 15 20 20 N 1.31616 * 119.99514 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00305 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47103 * 60.00082 * 21 19 17 23 23 H 1.48502 * 109.47327 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47083 * 299.99999 * 21 19 17 25 25 C 1.47026 * 108.70074 * 335.87083 * 16 15 14 26 26 H 1.08997 * 109.47324 * 270.15204 * 1 2 3 27 27 H 1.09005 * 109.47136 * 30.14850 * 1 2 3 28 28 H 1.08997 * 109.47386 * 150.14910 * 1 2 3 29 29 H 1.08002 * 125.57418 * 359.96169 * 3 2 1 30 30 H 1.07997 * 125.79391 * 179.97438 * 6 4 3 31 31 H 0.96999 * 119.99460 * 359.97438 * 10 8 7 32 32 H 1.09003 * 109.47365 * 59.99474 * 11 10 8 33 33 H 1.09000 * 109.46701 * 299.99851 * 11 10 8 34 34 H 1.08991 * 111.00600 * 324.20802 * 14 12 11 35 35 H 1.09004 * 111.00084 * 88.02248 * 14 12 11 36 36 H 1.09001 * 110.36852 * 278.17238 * 15 14 12 37 37 H 1.08998 * 110.36449 * 155.84885 * 15 14 12 38 38 H 0.97002 * 119.99999 * 179.97438 * 20 19 17 39 39 H 1.09004 * 109.87531 * 120.47707 * 25 16 15 40 40 H 1.08996 * 109.88343 * 241.48426 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 -0.0057 5 1 4.3841 1.2413 -0.0100 6 6 3.6656 -0.6903 -0.0039 7 6 2.3864 -1.1740 0.0036 8 6 1.9749 -2.5880 0.0075 9 8 0.7936 -2.8776 0.0138 10 7 2.9073 -3.5612 0.0040 11 6 2.4979 -4.9679 0.0072 12 6 3.7405 -5.8606 0.0029 13 1 4.3765 -5.6338 -0.8527 14 6 3.3395 -7.3595 0.0069 15 6 4.5783 -8.0110 0.6706 16 7 5.0052 -7.0469 1.7009 17 6 5.7327 -7.3466 2.8217 18 1 6.0009 -6.5644 3.5165 19 6 6.1257 -8.6555 3.0648 20 7 5.7985 -9.6088 2.2182 21 14 7.1187 -9.0641 4.5932 22 1 6.3411 -8.6925 5.8027 23 1 7.4092 -10.5202 4.6203 24 1 8.3946 -8.3046 4.5723 25 6 4.5260 -5.7095 1.3225 26 1 -0.3634 0.0027 1.0276 27 1 -0.3634 0.8887 -0.5162 28 1 -0.3634 -0.8913 -0.5115 29 1 1.9868 2.1059 -0.0006 30 1 4.5664 -1.2860 -0.0078 31 1 3.8493 -3.3302 -0.0014 32 1 1.8988 -5.1740 -0.8797 33 1 1.9073 -5.1723 0.9002 34 1 2.4439 -7.5227 0.6062 35 1 3.2000 -7.7292 -1.0090 36 1 5.3700 -8.1563 -0.0643 37 1 4.3066 -8.9615 1.1298 38 1 6.0734 -10.5234 2.3879 39 1 3.8716 -5.3164 2.1007 40 1 5.3733 -5.0393 1.1776 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028982484.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:06 Heat of formation + Delta-G solvation = 2.197872 kcal Electronic energy + Delta-G solvation = -21027.487864 eV Core-core repulsion = 17842.257580 eV Total energy + Delta-G solvation = -3185.230284 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.04282 -40.26985 -39.08498 -35.97874 -34.29833 -33.29746 -31.90672 -30.83064 -29.50243 -27.40987 -27.27237 -25.40448 -23.50251 -22.07006 -21.24047 -20.75770 -20.05830 -19.15724 -18.81555 -17.30610 -17.09615 -16.64423 -16.34427 -15.92463 -15.52730 -15.08372 -14.83156 -14.42451 -14.25869 -14.16758 -13.92287 -13.55558 -13.52465 -13.35231 -13.23063 -13.08452 -12.80614 -12.63229 -12.28273 -12.04604 -11.87213 -11.80993 -11.56193 -11.35263 -10.82459 -10.71868 -10.08316 -9.49054 -9.14286 -8.86760 -7.76163 -5.20456 0.82828 1.46824 1.50221 1.53510 1.56557 2.28656 2.50380 2.53120 2.63053 3.33173 3.65804 3.82641 4.01262 4.03923 4.06389 4.14739 4.34139 4.47398 4.50902 4.67662 4.70092 4.74891 4.87714 4.92924 4.94108 4.95523 5.08306 5.15056 5.19220 5.35489 5.39529 5.47893 5.55168 5.67616 5.84274 5.86661 6.00127 6.33194 6.68877 6.76789 7.12320 7.41216 7.80476 8.44244 9.25573 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027432 B = 0.003411 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.462618 B = 8206.326888 C = 8793.175962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.153 4.153 3 C -0.009 4.009 4 N -0.533 5.533 5 H 0.438 0.562 6 C 0.067 3.933 7 C -0.271 4.271 8 C 0.581 3.419 9 O -0.593 6.593 10 N -0.716 5.716 11 C 0.147 3.853 12 C -0.092 4.092 13 H 0.098 0.902 14 C -0.124 4.124 15 C 0.153 3.847 16 N -0.629 5.629 17 C -0.241 4.241 18 H 0.080 0.920 19 C -0.068 4.068 20 N -0.949 5.949 21 Si 0.980 3.020 22 H -0.279 1.279 23 H -0.293 1.293 24 H -0.276 1.276 25 C 0.139 3.861 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.047 0.953 29 H 0.202 0.798 30 H 0.201 0.799 31 H 0.410 0.590 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.089 0.911 36 H -0.008 1.008 37 H 0.070 0.930 38 H 0.247 0.753 39 H 0.017 0.983 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.342 22.404 -7.553 23.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.159 4.159 3 C -0.138 4.138 4 N -0.128 5.128 5 H 0.278 0.722 6 C -0.071 4.071 7 C -0.281 4.281 8 C 0.371 3.629 9 O -0.476 6.476 10 N -0.368 5.368 11 C 0.023 3.977 12 C -0.112 4.112 13 H 0.116 0.884 14 C -0.163 4.163 15 C 0.028 3.972 16 N -0.355 5.355 17 C -0.370 4.370 18 H 0.098 0.902 19 C -0.261 4.261 20 N -0.599 5.599 21 Si 0.808 3.192 22 H -0.205 1.205 23 H -0.220 1.220 24 H -0.202 1.202 25 C 0.014 3.986 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.066 0.934 29 H 0.219 0.781 30 H 0.218 0.782 31 H 0.246 0.754 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.010 0.990 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.036 0.964 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.971 22.147 -7.445 23.700 hybrid contribution 1.237 -0.536 0.883 1.612 sum -2.734 21.612 -6.562 22.751 Atomic orbital electron populations 1.20099 0.89942 1.02118 1.01430 1.20823 0.96018 0.91389 1.07625 1.21986 0.82338 0.99798 1.09636 1.41547 1.08816 1.06354 1.56103 0.72161 1.22304 0.98223 0.84805 1.01803 1.20425 0.94756 0.91772 1.21161 1.17886 0.84900 0.85305 0.74785 1.90698 1.19128 1.84625 1.53104 1.45759 1.10058 1.05586 1.75373 1.21134 0.95711 0.79470 1.01413 1.22277 0.95797 0.95153 0.97936 0.88367 1.22856 0.98172 0.94112 1.01124 1.21726 0.91796 0.94795 0.88927 1.44830 1.63074 1.04059 1.23538 1.19428 1.25458 0.93468 0.98649 0.90217 1.25641 1.02797 0.95733 1.01885 1.70051 1.51626 1.00253 1.37966 0.85123 0.78571 0.76471 0.78986 1.20496 1.21959 1.20212 1.21482 0.95446 0.87293 0.94388 0.92553 0.90029 0.93404 0.78094 0.78203 0.75394 0.91019 0.93416 0.92157 0.89208 0.99027 0.91192 0.94345 0.96449 0.95005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 9.97 71.23 0.71 -1.06 16 2 C -0.15 -3.40 6.35 -18.52 -0.12 -3.52 16 3 C -0.01 -0.13 11.82 83.12 0.98 0.85 16 4 N -0.53 -5.43 5.90 -194.55 -1.15 -6.58 16 5 H 0.44 0.98 8.96 -92.71 -0.83 0.15 16 6 C 0.07 1.02 11.40 83.91 0.96 1.98 16 7 C -0.27 -6.61 6.29 -19.04 -0.12 -6.73 16 8 C 0.58 17.88 7.81 86.62 0.68 18.55 16 9 O -0.59 -23.07 15.32 -4.11 -0.06 -23.13 16 10 N -0.72 -19.02 5.39 -466.53 -2.51 -21.53 16 11 C 0.15 4.41 4.99 86.38 0.43 4.84 16 12 C -0.09 -2.97 3.02 -9.61 -0.03 -3.00 16 13 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 14 C -0.12 -4.55 6.53 31.99 0.21 -4.34 16 15 C 0.15 7.54 5.89 86.86 0.51 8.05 16 16 N -0.63 -32.54 3.39 -691.99 -2.35 -34.89 16 17 C -0.24 -13.63 10.27 84.03 0.86 -12.77 16 18 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 19 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 20 N -0.95 -57.02 10.09 21.65 0.22 -56.80 16 21 Si 0.98 45.84 29.55 68.60 2.03 47.87 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 C 0.14 5.55 6.52 86.73 0.57 6.12 16 26 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.05 1.35 6.86 -2.39 -0.02 1.34 16 29 H 0.20 1.24 8.06 -2.91 -0.02 1.22 16 30 H 0.20 1.74 7.45 -2.91 -0.02 1.72 16 31 H 0.41 8.49 7.27 -92.71 -0.67 7.81 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.65 8.06 -2.39 -0.02 1.63 16 34 H 0.06 2.26 8.05 -2.39 -0.02 2.24 16 35 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 36 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H 0.07 3.98 5.87 -2.39 -0.01 3.97 16 38 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 39 H 0.02 0.73 7.77 -2.38 -0.02 0.71 16 40 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -78.44 328.81 1.83 -76.61 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -0.45 Total: 12.91 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 6.11 Total: 5.55 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -5.79 Total: -119.80 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.06 Total: -23.13 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -78.44 1.83 -76.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028982484.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.806 kcal (2) G-P(sol) polarization free energy of solvation -78.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds