Wall clock time and date at job start Mon Mar 30 2020 01:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35456 * 125.56587 * 2 1 4 4 C 1.39832 * 107.86280 * 179.97438 * 3 2 1 5 5 C 1.37871 * 107.08875 * 0.02562 * 4 3 2 6 6 C 1.46676 * 126.23246 * 179.97438 * 5 4 3 7 7 O 1.21698 * 119.99857 * 175.02329 * 6 5 4 8 8 N 1.34776 * 120.00291 * 355.02064 * 6 5 4 9 9 C 1.46501 * 120.00295 * 185.08322 * 8 6 5 10 10 C 1.52993 * 109.47167 * 179.97438 * 9 8 6 11 11 C 1.53942 * 113.74451 * 273.74090 * 10 9 8 12 12 N 1.47814 * 86.03520 * 222.08408 * 11 10 9 13 13 C 1.36941 * 134.45397 * 204.64293 * 12 11 10 14 14 H 1.08002 * 119.99961 * 179.86684 * 13 12 11 15 15 C 1.38813 * 120.00249 * 359.86863 * 13 12 11 16 16 N 1.31624 * 119.99819 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00102 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46924 * 90.00299 * 17 15 13 19 19 H 1.48503 * 109.47109 * 210.00048 * 17 15 13 20 20 H 1.48499 * 109.47208 * 330.00576 * 17 15 13 21 21 C 1.47576 * 91.05318 * 24.55024 * 12 11 10 22 22 N 1.35536 * 125.56079 * 179.69015 * 2 1 3 23 23 C 1.46496 * 125.67834 * 0.02562 * 22 2 1 24 24 H 1.08993 * 109.47320 * 90.02411 * 1 2 3 25 25 H 1.09006 * 109.47242 * 330.02383 * 1 2 3 26 26 H 1.08996 * 109.47356 * 210.02593 * 1 2 3 27 27 H 1.07998 * 126.06497 * 359.92972 * 3 2 1 28 28 H 1.08000 * 126.45563 * 180.02562 * 4 3 2 29 29 H 0.97002 * 119.99830 * 5.08644 * 8 6 5 30 30 H 1.08998 * 109.47110 * 300.00527 * 9 8 6 31 31 H 1.09003 * 109.46626 * 59.99939 * 9 8 6 32 32 H 1.08998 * 112.94395 * 45.33946 * 10 9 8 33 33 H 1.08996 * 113.76950 * 336.34964 * 11 10 9 34 34 H 1.09008 * 113.76561 * 107.74945 * 11 10 9 35 35 H 0.97001 * 120.00051 * 180.02562 * 16 15 13 36 36 H 1.08997 * 113.77008 * 221.14689 * 21 12 11 37 37 H 1.09007 * 113.76862 * 89.74968 * 21 12 11 38 38 H 1.09002 * 109.47236 * 95.47299 * 23 22 2 39 39 H 1.09005 * 109.46791 * 215.46612 * 23 22 2 40 40 H 1.09000 * 109.47004 * 335.46880 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6767 0.0006 5 6 3.6121 -0.7020 0.0004 6 6 4.7859 -1.5816 0.0003 7 8 4.6432 -2.7867 0.0915 8 7 6.0225 -1.0552 -0.1009 9 6 7.1871 -1.9369 -0.2132 10 6 8.4586 -1.0921 -0.3141 11 6 8.8009 -0.6563 -1.7503 12 7 10.2009 -0.9827 -1.4061 13 6 11.4228 -0.5737 -1.8697 14 1 12.3268 -0.9742 -1.4352 15 6 11.4995 0.3555 -2.8980 16 7 10.3977 0.8440 -3.4272 17 14 13.1663 0.9139 -3.5300 18 1 13.5999 0.0234 -4.6365 19 1 13.0648 2.3091 -4.0283 20 1 14.1594 0.8530 -2.4276 21 6 9.7532 -1.9238 -0.3612 22 7 2.2952 -1.1026 0.0060 23 6 1.8240 -2.4897 0.0129 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3634 0.8902 0.5135 26 1 -0.3634 -0.8897 0.5142 27 1 1.9545 2.1268 -0.0011 28 1 4.5024 1.3090 0.0011 29 1 6.1414 -0.0925 -0.0993 30 1 7.2444 -2.5769 0.6673 31 1 7.0900 -2.5549 -1.1058 32 1 8.4863 -0.2778 0.4100 33 1 8.3754 -1.3020 -2.5185 34 1 8.6296 0.4033 -1.9405 35 1 10.4513 1.4930 -4.1460 36 1 10.3408 -1.8744 0.5555 37 1 9.6080 -2.9426 -0.7205 38 1 1.8004 -2.8705 -1.0081 39 1 2.4996 -3.0998 0.6126 40 1 0.8218 -2.5308 0.4395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031536470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:31 Heat of formation + Delta-G solvation = 62.547453 kcal Electronic energy + Delta-G solvation = -20899.262200 eV Core-core repulsion = 17716.648871 eV Total energy + Delta-G solvation = -3182.613329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.50358 -39.12443 -37.84163 -34.52519 -32.92747 -32.19300 -31.81700 -29.05552 -27.02645 -26.58057 -25.29625 -24.75686 -22.31277 -21.67437 -20.27443 -19.49403 -18.82322 -17.57619 -16.68216 -15.92347 -15.84414 -15.35308 -15.04700 -14.58599 -14.37701 -13.78444 -13.62101 -13.42634 -13.35657 -13.10293 -12.97691 -12.83793 -12.36831 -12.12433 -12.02656 -11.93600 -11.39370 -11.31570 -10.98889 -10.70089 -10.57422 -10.04126 -9.75484 -9.73061 -9.42278 -8.86038 -8.80744 -8.78524 -8.08763 -6.86705 -5.75650 -3.07863 1.46208 2.56846 2.63611 3.39984 3.44548 3.45882 3.46807 3.53207 4.46336 4.61723 4.65415 4.81779 4.92374 5.09092 5.17962 5.26531 5.32903 5.35955 5.37210 5.42466 5.48114 5.60717 5.66596 5.84752 6.01615 6.04572 6.11584 6.25087 6.37366 6.56017 6.64372 6.72238 6.80024 6.93463 7.12409 7.23426 7.36662 7.56442 7.68948 7.99209 8.33236 9.05824 9.71995 10.61095 11.41477 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031696 B = 0.003215 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.178479 B = 8706.438773 C = 9328.250945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.035 3.965 3 C -0.206 4.206 4 C -0.137 4.137 5 C -0.050 4.050 6 C 0.586 3.414 7 O -0.559 6.559 8 N -0.708 5.708 9 C 0.133 3.867 10 C -0.153 4.153 11 C 0.168 3.832 12 N -0.613 5.613 13 C -0.223 4.223 14 H 0.080 0.920 15 C -0.009 4.009 16 N -0.921 5.921 17 Si 0.912 3.088 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.129 3.871 22 N -0.409 5.409 23 C 0.067 3.933 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.141 0.859 28 H 0.146 0.854 29 H 0.405 0.595 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.027 0.973 34 H 0.073 0.927 35 H 0.253 0.747 36 H 0.046 0.954 37 H 0.036 0.964 38 H 0.075 0.925 39 H 0.101 0.899 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.818 -1.618 8.371 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 C -0.230 4.230 4 C -0.163 4.163 5 C -0.163 4.163 6 C 0.373 3.627 7 O -0.440 6.440 8 N -0.358 5.358 9 C 0.010 3.990 10 C -0.173 4.173 11 C 0.043 3.957 12 N -0.339 5.339 13 C -0.351 4.351 14 H 0.097 0.903 15 C -0.205 4.205 16 N -0.569 5.569 17 Si 0.742 3.258 18 H -0.217 1.217 19 H -0.216 1.216 20 H -0.206 1.206 21 C 0.002 3.998 22 N -0.082 5.082 23 C -0.074 4.074 24 H 0.092 0.908 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.159 0.841 28 H 0.164 0.836 29 H 0.240 0.760 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.119 0.881 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.749 -2.686 8.214 21.557 hybrid contribution 0.974 0.706 -0.594 1.342 sum -18.776 -1.980 7.619 20.359 Atomic orbital electron populations 1.20371 0.87923 1.03251 1.02802 1.20538 0.93688 0.85938 1.08019 1.20603 0.92498 0.97690 1.12171 1.21390 0.97994 0.92026 1.04922 1.20084 0.84276 0.93650 1.18287 1.16982 0.82440 0.86722 0.76508 1.90756 1.86477 1.14987 1.51734 1.45710 1.05395 1.11112 1.73632 1.21477 0.83283 0.92636 1.01648 1.23814 0.92311 0.99183 1.02026 1.22360 0.83548 1.00285 0.89489 1.45985 1.01757 1.46122 1.40050 1.19032 0.82888 1.18979 1.14153 0.90266 1.24785 0.97256 0.99772 0.98705 1.69815 1.25454 1.33273 1.28311 0.86121 0.83063 0.77810 0.78773 1.21654 1.21623 1.20632 1.22483 0.91159 0.93282 0.92856 1.43727 1.04690 1.06497 1.53331 1.22211 1.01179 0.79831 1.04187 0.90800 0.89930 0.91757 0.84105 0.83614 0.76038 0.91759 0.91350 0.89100 0.95499 0.90890 0.93663 0.93628 0.94668 0.90669 0.88060 0.90123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.07 36.00 0.36 -0.21 16 2 C 0.03 0.37 6.87 -81.95 -0.56 -0.19 16 3 C -0.21 -2.27 10.71 -39.98 -0.43 -2.70 16 4 C -0.14 -1.69 10.35 -39.12 -0.41 -2.09 16 5 C -0.05 -0.69 6.89 -81.98 -0.56 -1.26 16 6 C 0.59 9.16 7.77 -12.85 -0.10 9.06 16 7 O -0.56 -10.01 14.78 5.19 0.08 -9.94 16 8 N -0.71 -10.34 5.54 -61.62 -0.34 -10.68 16 9 C 0.13 2.11 5.52 -4.05 -0.02 2.09 16 10 C -0.15 -2.75 3.93 -89.70 -0.35 -3.11 16 11 C 0.17 3.89 7.08 -2.84 -0.02 3.87 16 12 N -0.61 -15.76 3.70 -177.71 -0.66 -16.42 16 13 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 14 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 15 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 16 N -0.92 -27.34 11.39 55.49 0.63 -26.71 16 17 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 C 0.13 2.60 8.51 -2.97 -0.03 2.58 16 22 N -0.41 -5.01 3.16 -115.62 -0.37 -5.37 16 23 C 0.07 0.66 10.32 59.84 0.62 1.28 16 24 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.36 6.91 -51.93 -0.36 0.00 16 27 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.15 1.53 7.45 -52.49 -0.39 1.14 16 29 H 0.40 5.21 7.37 -40.82 -0.30 4.91 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.17 7.87 -51.93 -0.41 0.76 16 32 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 33 H 0.03 0.65 7.92 -51.93 -0.41 0.24 16 34 H 0.07 1.84 7.17 -51.92 -0.37 1.47 16 35 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.10 1.16 6.55 -51.93 -0.34 0.82 16 40 H 0.08 0.54 6.80 -51.93 -0.35 0.19 16 LS Contribution 332.86 15.07 5.02 5.02 Total: -1.00 -33.91 332.86 -8.28 -42.19 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.86 Total: 2.19 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -1.76 Total: 2.51 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: -0.73 Total: -59.18 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.91 -8.28 -42.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031536470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.737 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds