Wall clock time and date at job start Mon Mar 30 2020 01:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35456 * 125.56587 * 2 1 4 4 C 1.39832 * 107.86280 * 179.97438 * 3 2 1 5 5 C 1.37871 * 107.08875 * 0.02562 * 4 3 2 6 6 C 1.46676 * 126.23246 * 179.97438 * 5 4 3 7 7 O 1.21698 * 119.99857 * 175.02329 * 6 5 4 8 8 N 1.34776 * 120.00291 * 355.02064 * 6 5 4 9 9 C 1.46501 * 120.00295 * 185.08322 * 8 6 5 10 10 C 1.52993 * 109.47167 * 179.97438 * 9 8 6 11 11 C 1.53942 * 113.74451 * 273.74090 * 10 9 8 12 12 N 1.47814 * 86.03520 * 222.08408 * 11 10 9 13 13 C 1.36941 * 134.45397 * 204.64293 * 12 11 10 14 14 H 1.08002 * 119.99961 * 179.86684 * 13 12 11 15 15 C 1.38813 * 120.00249 * 359.86863 * 13 12 11 16 16 N 1.31624 * 119.99819 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00102 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46924 * 90.00299 * 17 15 13 19 19 H 1.48503 * 109.47109 * 210.00048 * 17 15 13 20 20 H 1.48499 * 109.47208 * 330.00576 * 17 15 13 21 21 C 1.47576 * 91.05318 * 24.55024 * 12 11 10 22 22 N 1.35536 * 125.56079 * 179.69015 * 2 1 3 23 23 C 1.46496 * 125.67834 * 0.02562 * 22 2 1 24 24 H 1.08993 * 109.47320 * 90.02411 * 1 2 3 25 25 H 1.09006 * 109.47242 * 330.02383 * 1 2 3 26 26 H 1.08996 * 109.47356 * 210.02593 * 1 2 3 27 27 H 1.07998 * 126.06497 * 359.92972 * 3 2 1 28 28 H 1.08000 * 126.45563 * 180.02562 * 4 3 2 29 29 H 0.97002 * 119.99830 * 5.08644 * 8 6 5 30 30 H 1.08998 * 109.47110 * 300.00527 * 9 8 6 31 31 H 1.09003 * 109.46626 * 59.99939 * 9 8 6 32 32 H 1.08998 * 112.94395 * 45.33946 * 10 9 8 33 33 H 1.08996 * 113.76950 * 336.34964 * 11 10 9 34 34 H 1.09008 * 113.76561 * 107.74945 * 11 10 9 35 35 H 0.97001 * 120.00051 * 180.02562 * 16 15 13 36 36 H 1.08997 * 113.77008 * 221.14689 * 21 12 11 37 37 H 1.09007 * 113.76862 * 89.74968 * 21 12 11 38 38 H 1.09002 * 109.47236 * 95.47299 * 23 22 2 39 39 H 1.09005 * 109.46791 * 215.46612 * 23 22 2 40 40 H 1.09000 * 109.47004 * 335.46880 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6767 0.0006 5 6 3.6121 -0.7020 0.0004 6 6 4.7859 -1.5816 0.0003 7 8 4.6432 -2.7867 0.0915 8 7 6.0225 -1.0552 -0.1009 9 6 7.1871 -1.9369 -0.2132 10 6 8.4586 -1.0921 -0.3141 11 6 8.8009 -0.6563 -1.7503 12 7 10.2009 -0.9827 -1.4061 13 6 11.4228 -0.5737 -1.8697 14 1 12.3268 -0.9742 -1.4352 15 6 11.4995 0.3555 -2.8980 16 7 10.3977 0.8440 -3.4272 17 14 13.1663 0.9139 -3.5300 18 1 13.5999 0.0234 -4.6365 19 1 13.0648 2.3091 -4.0283 20 1 14.1594 0.8530 -2.4276 21 6 9.7532 -1.9238 -0.3612 22 7 2.2952 -1.1026 0.0060 23 6 1.8240 -2.4897 0.0129 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3634 0.8902 0.5135 26 1 -0.3634 -0.8897 0.5142 27 1 1.9545 2.1268 -0.0011 28 1 4.5024 1.3090 0.0011 29 1 6.1414 -0.0925 -0.0993 30 1 7.2444 -2.5769 0.6673 31 1 7.0900 -2.5549 -1.1058 32 1 8.4863 -0.2778 0.4100 33 1 8.3754 -1.3020 -2.5185 34 1 8.6296 0.4033 -1.9405 35 1 10.4513 1.4930 -4.1460 36 1 10.3408 -1.8744 0.5555 37 1 9.6080 -2.9426 -0.7205 38 1 1.8004 -2.8705 -1.0081 39 1 2.4996 -3.0998 0.6126 40 1 0.8218 -2.5308 0.4395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031536470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:30 Heat of formation + Delta-G solvation = 40.305224 kcal Electronic energy + Delta-G solvation = -20900.226696 eV Core-core repulsion = 17716.648871 eV Total energy + Delta-G solvation = -3183.577825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.40330 -40.44303 -39.43514 -35.86268 -34.27642 -33.68219 -32.64022 -30.65282 -28.37753 -27.39248 -26.71390 -26.47617 -23.87894 -22.88899 -21.35685 -20.80529 -19.96987 -18.82306 -18.54242 -17.14310 -17.00185 -16.75860 -16.45194 -15.91428 -15.66871 -15.38692 -14.87943 -14.56982 -14.33591 -14.13937 -14.01682 -13.87209 -13.54703 -13.29651 -13.10303 -12.93477 -12.88917 -12.82365 -12.58630 -12.50776 -12.24751 -11.82723 -11.59084 -11.29497 -11.02134 -10.85537 -10.13190 -9.68652 -8.98360 -8.91485 -7.89969 -5.23418 0.46574 1.45903 1.47872 1.56557 1.65726 1.77452 2.37151 2.43136 2.48412 3.30542 3.39377 3.70091 3.83477 3.94459 3.96388 4.07956 4.28506 4.33966 4.35341 4.54191 4.59047 4.64470 4.75943 4.78274 4.83210 4.85689 4.86628 5.09432 5.11651 5.19629 5.26054 5.26913 5.39498 5.54886 5.64729 5.88855 5.94566 6.02898 6.33069 6.53808 6.92716 7.15942 7.61285 8.56981 9.26848 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031696 B = 0.003215 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.178479 B = 8706.438773 C = 9328.250945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.045 3.955 3 C -0.223 4.223 4 C -0.136 4.136 5 C -0.090 4.090 6 C 0.584 3.416 7 O -0.589 6.589 8 N -0.705 5.705 9 C 0.146 3.854 10 C -0.115 4.115 11 C 0.165 3.835 12 N -0.645 5.645 13 C -0.236 4.236 14 H 0.084 0.916 15 C -0.069 4.069 16 N -0.953 5.953 17 Si 0.979 3.021 18 H -0.289 1.289 19 H -0.293 1.293 20 H -0.267 1.267 21 C 0.127 3.873 22 N -0.418 5.418 23 C 0.065 3.935 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.078 0.922 27 H 0.163 0.837 28 H 0.157 0.843 29 H 0.413 0.587 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.105 0.895 33 H 0.011 0.989 34 H 0.045 0.955 35 H 0.248 0.752 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.015 -1.290 9.464 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.073 4.073 3 C -0.246 4.246 4 C -0.162 4.162 5 C -0.202 4.202 6 C 0.374 3.626 7 O -0.472 6.472 8 N -0.355 5.355 9 C 0.022 3.978 10 C -0.135 4.135 11 C 0.040 3.960 12 N -0.372 5.372 13 C -0.365 4.365 14 H 0.102 0.898 15 C -0.261 4.261 16 N -0.602 5.602 17 Si 0.807 3.193 18 H -0.216 1.216 19 H -0.219 1.219 20 H -0.192 1.192 21 C 0.002 3.998 22 N -0.092 5.092 23 C -0.075 4.075 24 H 0.103 0.897 25 H 0.119 0.881 26 H 0.097 0.903 27 H 0.181 0.819 28 H 0.174 0.826 29 H 0.249 0.751 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.123 0.877 33 H 0.029 0.971 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.942 -2.371 9.338 23.052 hybrid contribution 1.256 0.594 -0.913 1.663 sum -19.686 -1.777 8.425 21.487 Atomic orbital electron populations 1.20540 0.84875 1.04874 1.03997 1.21276 0.95542 0.85223 1.05267 1.20979 0.91997 0.99073 1.12560 1.21692 0.99284 0.91624 1.03636 1.19977 0.84627 0.94025 1.21616 1.17253 0.83005 0.86602 0.75766 1.90730 1.86911 1.16238 1.53333 1.45597 1.04982 1.11389 1.73549 1.21217 0.82706 0.92240 1.01640 1.23410 0.92590 0.98977 0.98510 1.22269 0.83109 0.98347 0.92258 1.46406 1.01786 1.47701 1.41305 1.19447 0.84323 1.18681 1.14010 0.89844 1.25640 1.00778 1.00367 0.99357 1.70004 1.27427 1.33965 1.28784 0.85069 0.79168 0.76803 0.78233 1.21585 1.21929 1.19175 1.22689 0.91911 0.93158 0.92041 1.43986 1.04345 1.07611 1.53245 1.22296 1.02397 0.78729 1.04091 0.89656 0.88144 0.90338 0.81942 0.82577 0.75088 0.90378 0.92727 0.87714 0.97117 0.93660 0.94285 0.91833 0.93486 0.90719 0.90074 0.86664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 10.07 71.23 0.72 -0.12 16 2 C 0.04 0.85 6.87 41.34 0.28 1.13 16 3 C -0.22 -4.50 10.71 22.01 0.24 -4.26 16 4 C -0.14 -3.22 10.35 22.57 0.23 -2.99 16 5 C -0.09 -2.49 6.89 40.35 0.28 -2.21 16 6 C 0.58 18.35 7.77 86.45 0.67 19.02 16 7 O -0.59 -21.40 14.78 -4.34 -0.06 -21.46 16 8 N -0.70 -20.39 5.54 -467.09 -2.59 -22.97 16 9 C 0.15 4.53 5.52 86.38 0.48 5.01 16 10 C -0.12 -4.05 3.93 -10.14 -0.04 -4.09 16 11 C 0.17 7.80 7.08 86.44 0.61 8.42 16 12 N -0.65 -33.32 3.70 -716.15 -2.65 -35.97 16 13 C -0.24 -13.41 10.70 84.03 0.90 -12.51 16 14 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 15 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 16 N -0.95 -57.88 11.39 21.65 0.25 -57.63 16 17 Si 0.98 46.08 29.55 68.60 2.03 48.10 16 18 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 19 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 C 0.13 4.99 8.51 86.49 0.74 5.73 16 22 N -0.42 -9.78 3.16 -519.71 -1.64 -11.42 16 23 C 0.07 1.23 10.32 127.77 1.32 2.55 16 24 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 26 H 0.08 0.57 6.91 -2.39 -0.02 0.55 16 27 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 28 H 0.16 3.16 7.45 -2.91 -0.02 3.14 16 29 H 0.41 10.49 7.37 -92.71 -0.68 9.80 16 30 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.05 1.87 7.87 -2.39 -0.02 1.85 16 32 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 33 H 0.01 0.55 7.92 -2.39 -0.02 0.53 16 34 H 0.04 2.37 7.17 -2.38 -0.02 2.35 16 35 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.05 1.77 8.10 -2.38 -0.02 1.75 16 38 H 0.07 1.38 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.88 6.55 -2.38 -0.02 1.86 16 40 H 0.12 1.27 6.80 -2.39 -0.02 1.26 16 Total: -1.00 -74.15 332.86 2.58 -71.58 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.36 Total: 17.57 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 6.89 Total: 12.21 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -6.64 Total: -128.00 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.06 Total: -21.46 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -74.15 2.58 -71.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031536470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.883 kcal (2) G-P(sol) polarization free energy of solvation -74.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds