Wall clock time and date at job start Mon Mar 30 2020 01:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39834 * 126.45459 * 2 1 4 4 C 1.35458 * 107.86048 * 179.97438 * 3 2 1 5 5 N 1.35526 * 108.87037 * 359.73582 * 4 3 2 6 6 C 1.46507 * 125.67496 * 180.29961 * 5 4 3 7 7 C 1.37651 * 108.64840 * 0.43202 * 5 4 3 8 8 C 1.46675 * 126.23225 * 179.82943 * 7 5 4 9 9 O 1.21694 * 120.00097 * 99.63716 * 8 7 5 10 10 N 1.34781 * 120.00212 * 279.62847 * 8 7 5 11 11 C 1.46494 * 120.00469 * 185.01576 * 10 8 7 12 12 C 1.52994 * 109.47330 * 180.02562 * 11 10 8 13 13 C 1.53504 * 114.20372 * 185.00147 * 12 11 10 14 14 N 1.47069 * 87.98334 * 220.14851 * 13 12 11 15 15 C 1.36940 * 136.05664 * 207.08981 * 14 13 12 16 16 H 1.07999 * 119.99650 * 354.88352 * 15 14 13 17 17 C 1.38805 * 120.00004 * 174.88597 * 15 14 13 18 18 N 1.31624 * 120.00178 * 184.55364 * 17 15 14 19 19 Si 1.86805 * 120.00145 * 4.55199 * 17 15 14 20 20 H 1.48500 * 109.47412 * 174.36944 * 19 17 15 21 21 H 1.48498 * 109.47126 * 294.37144 * 19 17 15 22 22 H 1.48496 * 109.47078 * 54.36927 * 19 17 15 23 23 C 1.47065 * 87.88327 * 27.34325 * 14 13 12 24 24 H 1.09006 * 109.46871 * 270.03398 * 1 2 3 25 25 H 1.08995 * 109.47415 * 30.03324 * 1 2 3 26 26 H 1.09002 * 109.47459 * 150.04179 * 1 2 3 27 27 H 1.07998 * 126.07180 * 359.93903 * 3 2 1 28 28 H 1.07999 * 125.55937 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.47309 * 275.14852 * 6 5 4 30 30 H 1.09001 * 109.47031 * 35.15104 * 6 5 4 31 31 H 1.09003 * 109.47105 * 155.14240 * 6 5 4 32 32 H 0.97003 * 119.99547 * 5.01844 * 10 8 7 33 33 H 1.09005 * 109.46765 * 60.00341 * 11 10 8 34 34 H 1.08998 * 109.47110 * 300.00695 * 11 10 8 35 35 H 1.08999 * 113.28328 * 318.06588 * 12 11 10 36 36 H 1.08999 * 113.46887 * 105.37210 * 13 12 11 37 37 H 1.08991 * 113.52259 * 334.93675 * 13 12 11 38 38 H 0.96997 * 119.99536 * 5.00372 * 18 17 15 39 39 H 1.09001 * 113.47007 * 87.44238 * 23 14 13 40 40 H 1.09001 * 113.46648 * 217.87694 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6928 0.0006 5 7 3.6283 -0.6624 0.0069 6 6 4.8225 -1.5111 0.0157 7 6 2.3262 -1.1089 0.0005 8 6 1.8899 -2.5092 0.0006 9 8 1.5348 -3.0358 1.0387 10 7 1.8821 -3.2128 -1.1489 11 6 1.3437 -4.5750 -1.1705 12 6 1.4533 -5.1445 -2.5862 13 6 0.8086 -6.5267 -2.7603 14 7 1.9525 -6.8961 -3.6076 15 6 2.1748 -7.7705 -4.6377 16 1 1.3967 -8.4544 -4.9428 17 6 3.4003 -7.7778 -5.2896 18 7 3.5842 -8.5542 -6.3365 19 14 4.7884 -6.6858 -4.6814 20 1 6.0221 -6.9761 -5.4553 21 1 4.4134 -5.2606 -4.8641 22 1 5.0333 -6.9525 -3.2412 23 6 2.7543 -5.9177 -2.8573 24 1 -0.3633 0.0006 1.0277 25 1 -0.3634 0.8896 -0.5143 26 1 -0.3634 -0.8904 -0.5132 27 1 2.0136 2.1549 -0.0009 28 1 4.4972 1.3253 0.0011 29 1 5.1763 -1.6511 -1.0057 30 1 5.6030 -1.0338 0.6084 31 1 4.5768 -2.4796 0.4511 32 1 2.2331 -2.8171 -1.9621 33 1 0.2972 -4.5569 -0.8657 34 1 1.9116 -5.2011 -0.4824 35 1 1.1866 -4.4261 -3.3614 36 1 -0.1390 -6.4990 -3.2983 37 1 0.7511 -7.0995 -1.8349 38 1 2.8433 -9.0663 -6.6966 39 1 3.2103 -6.3293 -1.9569 40 1 3.4644 -5.3712 -3.4780 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031632511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:43 Heat of formation + Delta-G solvation = 74.821747 kcal Electronic energy + Delta-G solvation = -21293.086938 eV Core-core repulsion = 18111.005862 eV Total energy + Delta-G solvation = -3182.081076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.53452 -39.42659 -38.40928 -34.63465 -33.88960 -32.46423 -30.64440 -29.44295 -28.22497 -25.97945 -25.41970 -25.24106 -22.47838 -21.44449 -20.42736 -19.89447 -18.96004 -17.62893 -17.51611 -16.39419 -16.00704 -15.67223 -15.27518 -15.04541 -14.29064 -14.12162 -13.63988 -13.53179 -13.41571 -13.27027 -13.16100 -12.95974 -12.81468 -12.18283 -12.16091 -11.96314 -11.68495 -11.54653 -11.19052 -10.93066 -10.51942 -10.41111 -10.06411 -9.28494 -9.18493 -8.98625 -8.95781 -8.72078 -8.23505 -7.19960 -6.35404 -3.27959 1.73536 2.18054 2.69138 2.83826 3.29236 3.30343 3.37987 3.59183 4.48717 4.53793 4.58964 4.68840 4.84585 4.87183 4.89983 5.08720 5.14170 5.16334 5.18697 5.47526 5.51080 5.54993 5.63858 5.75064 5.89043 5.90458 5.93275 6.08092 6.17282 6.17605 6.19691 6.32856 6.42700 6.70781 6.84141 6.87141 7.05158 7.06117 7.40756 8.07900 8.19225 8.93207 9.45369 10.30864 11.16448 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.004167 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.760147 B = 6717.964633 C = 7376.536278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.113 4.113 3 C -0.202 4.202 4 C 0.004 3.996 5 N -0.424 5.424 6 C 0.066 3.934 7 C -0.044 4.044 8 C 0.589 3.411 9 O -0.529 6.529 10 N -0.714 5.714 11 C 0.129 3.871 12 C -0.145 4.145 13 C 0.134 3.866 14 N -0.628 5.628 15 C -0.303 4.303 16 H 0.083 0.917 17 C -0.025 4.025 18 N -0.935 5.935 19 Si 1.075 2.925 20 H -0.295 1.295 21 H -0.292 1.292 22 H -0.290 1.290 23 C 0.095 3.905 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.140 0.860 28 H 0.166 0.834 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.404 0.596 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.049 0.951 37 H 0.041 0.959 38 H 0.261 0.739 39 H 0.043 0.957 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.751 19.818 12.860 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C -0.226 4.226 4 C -0.129 4.129 5 N -0.100 5.100 6 C -0.076 4.076 7 C -0.157 4.157 8 C 0.373 3.627 9 O -0.405 6.405 10 N -0.365 5.365 11 C 0.006 3.994 12 C -0.165 4.165 13 C 0.006 3.994 14 N -0.356 5.356 15 C -0.429 4.429 16 H 0.101 0.899 17 C -0.224 4.224 18 N -0.577 5.577 19 Si 0.909 3.091 20 H -0.223 1.223 21 H -0.221 1.221 22 H -0.218 1.218 23 C -0.030 4.030 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.158 0.842 28 H 0.184 0.816 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.238 0.762 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.920 19.320 13.138 23.382 hybrid contribution -1.288 -0.289 -0.077 1.322 sum -0.368 19.031 13.061 23.085 Atomic orbital electron populations 1.20193 0.89773 1.02129 1.01987 1.19746 0.95314 0.90900 1.06072 1.20667 0.91711 0.98431 1.11815 1.21862 0.99411 0.82453 1.09139 1.43853 1.05060 1.06350 1.54717 1.22178 0.85902 0.95538 1.03951 1.20115 0.84025 0.93548 1.18041 1.17128 0.78205 0.83591 0.83755 1.90842 1.47933 1.69923 1.31760 1.46156 1.62740 1.16151 1.11445 1.21451 0.99224 0.81116 0.97643 1.23523 1.00515 0.97610 0.94809 1.22243 0.92886 0.90132 0.94099 1.46053 1.07142 1.46889 1.35515 1.20181 1.02291 1.14287 1.06185 0.89939 1.25699 0.98956 1.01176 0.96532 1.70912 1.33970 1.29562 1.23285 0.83651 0.76020 0.74564 0.74898 1.22257 1.22127 1.21766 1.22961 0.94128 0.90640 0.95281 0.91541 0.91501 0.92219 0.84177 0.81630 0.90051 0.89331 0.89622 0.76183 0.91027 0.90950 0.88134 0.93245 0.94147 0.92875 0.93952 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 10.20 36.01 0.37 -0.50 16 2 C -0.11 -1.35 6.21 -104.16 -0.65 -1.99 16 3 C -0.20 -2.04 10.76 -39.98 -0.43 -2.47 16 4 C 0.00 0.04 11.38 -16.91 -0.19 -0.15 16 5 N -0.42 -4.47 3.16 -120.23 -0.38 -4.85 16 6 C 0.07 0.51 10.98 59.85 0.66 1.17 16 7 C -0.04 -0.57 6.63 -81.98 -0.54 -1.11 16 8 C 0.59 8.41 6.57 -12.85 -0.08 8.33 16 9 O -0.53 -9.37 17.12 5.19 0.09 -9.28 16 10 N -0.71 -9.13 5.55 -61.62 -0.34 -9.47 16 11 C 0.13 1.79 5.60 -4.05 -0.02 1.77 16 12 C -0.14 -2.32 4.11 -89.97 -0.37 -2.69 16 13 C 0.13 2.53 8.25 -8.51 -0.07 2.46 16 14 N -0.63 -15.25 3.69 -184.60 -0.68 -15.94 16 15 C -0.30 -8.73 11.09 -15.06 -0.17 -8.90 16 16 H 0.08 2.50 8.05 -52.49 -0.42 2.08 16 17 C -0.03 -0.74 5.50 -17.43 -0.10 -0.84 16 18 N -0.93 -29.46 13.70 55.49 0.76 -28.70 16 19 Si 1.08 26.49 25.12 -169.99 -4.27 22.22 16 20 H -0.30 -7.40 7.11 56.52 0.40 -6.99 16 21 H -0.29 -6.65 6.28 56.52 0.36 -6.30 16 22 H -0.29 -6.74 6.72 56.52 0.38 -6.36 16 23 C 0.10 1.93 5.51 -8.38 -0.05 1.88 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.64 7.96 -51.93 -0.41 0.23 16 27 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 28 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.77 7.68 -51.93 -0.40 0.37 16 32 H 0.40 4.57 8.46 -40.82 -0.35 4.22 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.06 7.81 -51.93 -0.41 0.66 16 35 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.04 0.73 8.11 -51.93 -0.42 0.31 16 38 H 0.26 8.13 8.73 -40.82 -0.36 7.77 16 39 H 0.04 0.85 7.82 -51.93 -0.41 0.44 16 40 H 0.05 1.13 4.02 -51.93 -0.21 0.92 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -35.27 332.98 -7.50 -42.76 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.05 Total: 1.29 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -1.64 Total: -3.05 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: -0.64 Total: -58.96 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.09 Total: -9.28 kcal Atomic # 14 Polarization: 26.49 SS G_CDS: -4.27 Total: 22.22 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.27 -7.50 -42.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031632511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.586 kcal (2) G-P(sol) polarization free energy of solvation -35.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds