Wall clock time and date at job start Mon Mar 30 2020 01:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39834 * 126.45459 * 2 1 4 4 C 1.35458 * 107.86048 * 179.97438 * 3 2 1 5 5 N 1.35526 * 108.87037 * 359.73582 * 4 3 2 6 6 C 1.46507 * 125.67496 * 180.29961 * 5 4 3 7 7 C 1.37651 * 108.64840 * 0.43202 * 5 4 3 8 8 C 1.46675 * 126.23225 * 179.82943 * 7 5 4 9 9 O 1.21694 * 120.00097 * 99.63716 * 8 7 5 10 10 N 1.34781 * 120.00212 * 279.62847 * 8 7 5 11 11 C 1.46494 * 120.00469 * 185.01576 * 10 8 7 12 12 C 1.52994 * 109.47330 * 180.02562 * 11 10 8 13 13 C 1.53504 * 114.20372 * 185.00147 * 12 11 10 14 14 N 1.47069 * 87.98334 * 220.14851 * 13 12 11 15 15 C 1.36940 * 136.05664 * 207.08981 * 14 13 12 16 16 H 1.07999 * 119.99650 * 354.88352 * 15 14 13 17 17 C 1.38805 * 120.00004 * 174.88597 * 15 14 13 18 18 N 1.31624 * 120.00178 * 184.55364 * 17 15 14 19 19 Si 1.86805 * 120.00145 * 4.55199 * 17 15 14 20 20 H 1.48500 * 109.47412 * 174.36944 * 19 17 15 21 21 H 1.48498 * 109.47126 * 294.37144 * 19 17 15 22 22 H 1.48496 * 109.47078 * 54.36927 * 19 17 15 23 23 C 1.47065 * 87.88327 * 27.34325 * 14 13 12 24 24 H 1.09006 * 109.46871 * 270.03398 * 1 2 3 25 25 H 1.08995 * 109.47415 * 30.03324 * 1 2 3 26 26 H 1.09002 * 109.47459 * 150.04179 * 1 2 3 27 27 H 1.07998 * 126.07180 * 359.93903 * 3 2 1 28 28 H 1.07999 * 125.55937 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.47309 * 275.14852 * 6 5 4 30 30 H 1.09001 * 109.47031 * 35.15104 * 6 5 4 31 31 H 1.09003 * 109.47105 * 155.14240 * 6 5 4 32 32 H 0.97003 * 119.99547 * 5.01844 * 10 8 7 33 33 H 1.09005 * 109.46765 * 60.00341 * 11 10 8 34 34 H 1.08998 * 109.47110 * 300.00695 * 11 10 8 35 35 H 1.08999 * 113.28328 * 318.06588 * 12 11 10 36 36 H 1.08999 * 113.46887 * 105.37210 * 13 12 11 37 37 H 1.08991 * 113.52259 * 334.93675 * 13 12 11 38 38 H 0.96997 * 119.99536 * 5.00372 * 18 17 15 39 39 H 1.09001 * 113.47007 * 87.44238 * 23 14 13 40 40 H 1.09001 * 113.46648 * 217.87694 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6928 0.0006 5 7 3.6283 -0.6624 0.0069 6 6 4.8225 -1.5111 0.0157 7 6 2.3262 -1.1089 0.0005 8 6 1.8899 -2.5092 0.0006 9 8 1.5348 -3.0358 1.0387 10 7 1.8821 -3.2128 -1.1489 11 6 1.3437 -4.5750 -1.1705 12 6 1.4533 -5.1445 -2.5862 13 6 0.8086 -6.5267 -2.7603 14 7 1.9525 -6.8961 -3.6076 15 6 2.1748 -7.7705 -4.6377 16 1 1.3967 -8.4544 -4.9428 17 6 3.4003 -7.7778 -5.2896 18 7 3.5842 -8.5542 -6.3365 19 14 4.7884 -6.6858 -4.6814 20 1 6.0221 -6.9761 -5.4553 21 1 4.4134 -5.2606 -4.8641 22 1 5.0333 -6.9525 -3.2412 23 6 2.7543 -5.9177 -2.8573 24 1 -0.3633 0.0006 1.0277 25 1 -0.3634 0.8896 -0.5143 26 1 -0.3634 -0.8904 -0.5132 27 1 2.0136 2.1549 -0.0009 28 1 4.4972 1.3253 0.0011 29 1 5.1763 -1.6511 -1.0057 30 1 5.6030 -1.0338 0.6084 31 1 4.5768 -2.4796 0.4511 32 1 2.2331 -2.8171 -1.9621 33 1 0.2972 -4.5569 -0.8657 34 1 1.9116 -5.2011 -0.4824 35 1 1.1866 -4.4261 -3.3614 36 1 -0.1390 -6.4990 -3.2983 37 1 0.7511 -7.0995 -1.8349 38 1 2.8433 -9.0663 -6.6966 39 1 3.2103 -6.3293 -1.9569 40 1 3.4644 -5.3712 -3.4780 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031632511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:43 Heat of formation + Delta-G solvation = 49.642962 kcal Electronic energy + Delta-G solvation = -21294.178772 eV Core-core repulsion = 18111.005862 eV Total energy + Delta-G solvation = -3183.172910 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.32550 -40.71859 -39.78176 -35.90588 -34.61140 -34.54210 -31.64158 -30.73586 -29.22872 -27.39109 -27.02186 -26.04210 -23.81202 -22.78053 -21.43268 -21.08122 -20.10969 -19.59120 -18.45365 -17.62632 -17.29559 -16.82532 -16.27426 -16.08211 -15.79469 -15.55398 -15.14596 -14.78574 -14.60307 -14.15936 -14.07650 -13.95431 -13.62812 -13.55879 -13.18470 -12.95986 -12.85814 -12.82353 -12.50758 -12.43661 -12.23696 -12.04088 -11.36242 -11.25737 -11.04963 -10.83580 -10.19210 -9.44351 -9.22350 -9.03688 -8.66873 -5.50373 0.91043 1.25636 1.33598 1.46584 1.66877 1.90760 1.98019 2.36375 2.52803 2.98036 3.15058 3.42559 3.74743 3.89368 3.93782 4.20077 4.24615 4.34197 4.36569 4.41186 4.43422 4.53445 4.63537 4.64192 4.70362 4.77775 4.83147 4.87408 4.88161 5.13293 5.14089 5.16332 5.28359 5.43581 5.45314 5.92704 5.94703 6.08423 6.36879 6.40950 6.67573 7.03564 7.30182 8.24155 8.87800 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024096 B = 0.004167 C = 0.003795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.760147 B = 6717.964633 C = 7376.536278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.126 4.126 3 C -0.218 4.218 4 C 0.017 3.983 5 N -0.427 5.427 6 C 0.060 3.940 7 C -0.080 4.080 8 C 0.596 3.404 9 O -0.571 6.571 10 N -0.704 5.704 11 C 0.140 3.860 12 C -0.108 4.108 13 C 0.127 3.873 14 N -0.663 5.663 15 C -0.294 4.294 16 H 0.048 0.952 17 C -0.086 4.086 18 N -0.972 5.972 19 Si 1.114 2.886 20 H -0.306 1.306 21 H -0.260 1.260 22 H -0.268 1.268 23 C 0.087 3.913 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.049 0.951 27 H 0.160 0.840 28 H 0.203 0.797 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.413 0.587 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.113 0.887 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.246 0.754 39 H 0.052 0.948 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.173 22.957 14.293 27.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.134 4.134 3 C -0.242 4.242 4 C -0.116 4.116 5 N -0.102 5.102 6 C -0.080 4.080 7 C -0.193 4.193 8 C 0.382 3.618 9 O -0.449 6.449 10 N -0.355 5.355 11 C 0.016 3.984 12 C -0.127 4.127 13 C 0.001 3.999 14 N -0.391 5.391 15 C -0.421 4.421 16 H 0.066 0.934 17 C -0.277 4.277 18 N -0.618 5.618 19 Si 0.940 3.060 20 H -0.234 1.234 21 H -0.186 1.186 22 H -0.194 1.194 23 C -0.037 4.037 24 H 0.082 0.918 25 H 0.103 0.897 26 H 0.068 0.932 27 H 0.177 0.823 28 H 0.220 0.780 29 H 0.113 0.887 30 H 0.133 0.867 31 H 0.088 0.912 32 H 0.249 0.751 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.131 0.869 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.804 22.486 14.592 26.867 hybrid contribution -1.674 -1.266 -0.477 2.152 sum 0.130 21.220 14.115 25.486 Atomic orbital electron populations 1.20220 0.89383 1.02563 1.01923 1.20103 0.96027 0.91492 1.05767 1.20992 0.91971 0.98932 1.12261 1.22504 1.00439 0.82133 1.06563 1.44079 1.04838 1.07133 1.54195 1.22377 0.85583 0.94859 1.05221 1.19981 0.85539 0.92725 1.21005 1.17304 0.77206 0.84123 0.83176 1.90814 1.49930 1.70996 1.33182 1.46030 1.62207 1.15565 1.11656 1.21250 0.99903 0.81545 0.95718 1.23164 0.96806 0.96255 0.96486 1.22492 0.91901 0.91802 0.93659 1.46160 1.10518 1.46659 1.35801 1.20052 1.01164 1.13670 1.07227 0.93384 1.27121 1.01919 1.02335 0.96370 1.71019 1.33606 1.31716 1.25409 0.83231 0.72676 0.74719 0.75413 1.23382 1.18637 1.19402 1.23195 0.95660 0.90003 0.94835 0.91842 0.89650 0.93175 0.82288 0.78027 0.88712 0.86684 0.91213 0.75052 0.90039 0.91373 0.86862 0.92808 0.92646 0.94515 0.93008 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 10.20 71.24 0.73 -0.89 16 2 C -0.13 -2.77 6.21 -19.57 -0.12 -2.89 16 3 C -0.22 -3.78 10.76 22.01 0.24 -3.54 16 4 C 0.02 0.26 11.38 83.48 0.95 1.21 16 5 N -0.43 -7.81 3.16 -534.30 -1.69 -9.50 16 6 C 0.06 0.76 10.98 127.77 1.40 2.17 16 7 C -0.08 -1.90 6.63 40.35 0.27 -1.63 16 8 C 0.60 16.17 6.57 86.45 0.57 16.73 16 9 O -0.57 -19.82 17.12 -4.33 -0.07 -19.89 16 10 N -0.70 -16.31 5.55 -467.10 -2.59 -18.90 16 11 C 0.14 3.49 5.60 86.38 0.48 3.98 16 12 C -0.11 -3.14 4.11 -10.37 -0.04 -3.18 16 13 C 0.13 4.57 8.25 83.18 0.69 5.26 16 14 N -0.66 -31.45 3.69 -737.96 -2.72 -34.17 16 15 C -0.29 -17.18 11.09 84.03 0.93 -16.25 16 16 H 0.05 3.05 8.05 -2.91 -0.02 3.03 16 17 C -0.09 -5.16 5.50 84.86 0.47 -4.69 16 18 N -0.97 -63.15 13.70 21.65 0.30 -62.86 16 19 Si 1.11 52.46 25.12 68.60 1.72 54.18 16 20 H -0.31 -14.82 7.11 99.48 0.71 -14.11 16 21 H -0.26 -10.76 6.28 99.48 0.63 -10.13 16 22 H -0.27 -11.53 6.72 99.48 0.67 -10.86 16 23 C 0.09 3.29 5.51 83.26 0.46 3.75 16 24 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 1.04 7.96 -2.39 -0.02 1.02 16 27 H 0.16 2.01 8.06 -2.91 -0.02 1.99 16 28 H 0.20 1.35 8.06 -2.91 -0.02 1.32 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 1.12 7.68 -2.39 -0.02 1.10 16 32 H 0.41 8.12 8.46 -92.71 -0.78 7.34 16 33 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.07 1.83 7.81 -2.39 -0.02 1.81 16 35 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 1.86 8.11 -2.39 -0.02 1.85 16 38 H 0.25 16.07 8.73 -92.71 -0.81 15.26 16 39 H 0.05 1.90 7.82 -2.39 -0.02 1.88 16 40 H 0.05 2.04 4.02 -2.39 -0.01 2.03 16 Total: -1.00 -78.60 332.98 2.05 -76.55 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.10 Total: 14.58 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 7.02 Total: 0.01 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -6.71 Total: -125.43 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.07 Total: -19.89 kcal Atomic # 14 Polarization: 52.46 SS G_CDS: 1.72 Total: 54.18 kcal Total: -78.60 2.05 -76.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031632511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.194 kcal (2) G-P(sol) polarization free energy of solvation -78.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds