Wall clock time and date at job start Mon Mar 30 2020 01:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35459 * 125.56350 * 2 1 4 4 C 1.39828 * 107.86450 * 180.28913 * 3 2 1 5 5 C 1.50703 * 126.45738 * 179.73876 * 4 3 2 6 6 C 1.37873 * 107.08860 * 359.57688 * 4 3 2 7 7 C 1.46681 * 126.23758 * 180.12393 * 6 4 3 8 8 O 1.21698 * 119.99865 * 0.32314 * 7 6 4 9 9 N 1.34776 * 119.99956 * 180.33017 * 7 6 4 10 10 C 1.46501 * 119.99727 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47009 * 179.97438 * 10 9 7 12 12 C 1.53945 * 113.74183 * 273.74172 * 11 10 9 13 13 N 1.47813 * 86.03574 * 222.08449 * 12 11 10 14 14 C 1.36939 * 134.45570 * 204.64028 * 13 12 11 15 15 H 1.08004 * 120.00210 * 179.86494 * 14 13 12 16 16 C 1.38809 * 119.99916 * 359.87185 * 14 13 12 17 17 N 1.31622 * 120.00439 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99903 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47198 * 89.99859 * 18 16 14 20 20 H 1.48499 * 109.47200 * 209.99577 * 18 16 14 21 21 H 1.48499 * 109.47309 * 330.00014 * 18 16 14 22 22 C 1.47576 * 91.05150 * 24.55184 * 13 12 11 23 23 N 1.35538 * 125.56567 * 180.02562 * 2 1 3 24 24 H 0.96994 * 125.67541 * 359.97423 * 23 2 1 25 25 H 1.09000 * 109.47418 * 90.00264 * 1 2 3 26 26 H 1.09003 * 109.46632 * 209.99944 * 1 2 3 27 27 H 1.08999 * 109.47122 * 329.99096 * 1 2 3 28 28 H 1.08002 * 126.06353 * 0.02562 * 3 2 1 29 29 H 1.09003 * 109.46924 * 90.02536 * 5 4 3 30 30 H 1.09003 * 109.47294 * 210.01990 * 5 4 3 31 31 H 1.08996 * 109.47194 * 330.02559 * 5 4 3 32 32 H 0.96990 * 119.99923 * 359.97438 * 9 7 6 33 33 H 1.08997 * 109.47530 * 300.00120 * 10 9 7 34 34 H 1.09000 * 109.46954 * 59.99780 * 10 9 7 35 35 H 1.09003 * 112.94843 * 45.33453 * 11 10 9 36 36 H 1.09000 * 113.77075 * 336.34829 * 12 11 10 37 37 H 1.09001 * 113.77267 * 107.74505 * 12 11 10 38 38 H 0.96996 * 120.00360 * 180.02562 * 17 16 14 39 39 H 1.09006 * 113.76817 * 221.15692 * 22 13 12 40 40 H 1.09001 * 113.77631 * 89.75830 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6768 -0.0067 5 6 4.8485 1.5593 -0.0147 6 6 3.6122 -0.7018 -0.0010 7 6 4.7860 -1.5814 -0.0023 8 8 5.9050 -1.1029 -0.0030 9 7 4.6253 -2.9196 -0.0028 10 6 5.7977 -3.7980 -0.0046 11 6 5.3409 -5.2582 -0.0043 12 6 5.0700 -5.8225 1.4022 13 7 5.7570 -7.0441 0.9325 14 6 5.7186 -8.3647 1.2928 15 1 6.3366 -9.0838 0.7755 16 6 4.8854 -8.7792 2.3227 17 7 4.1326 -7.9029 2.9534 18 14 4.8325 -10.5807 2.8137 19 1 5.8485 -10.8370 3.8661 20 1 3.4830 -10.9116 3.3377 21 1 5.1241 -11.4258 1.6280 22 6 6.4986 -6.2699 -0.0816 23 7 2.2953 -1.1025 -0.0005 24 1 1.9834 -2.0209 -0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5140 28 1 1.9544 2.1269 0.0004 29 1 5.1489 1.7731 1.0111 30 1 5.6613 1.0501 -0.5326 31 1 4.6189 2.4929 -0.5281 32 1 3.7336 -3.3009 -0.0020 33 1 6.3956 -3.6043 -0.8952 34 1 6.3977 -3.6052 0.8847 35 1 4.5395 -5.4530 -0.7170 36 1 5.6013 -5.2975 2.1961 37 1 4.0122 -5.9685 1.6209 38 1 3.5506 -8.1924 3.6733 39 1 6.5792 -6.7724 -1.0456 40 1 7.4505 -5.8766 0.2753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031776713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:53 Heat of formation + Delta-G solvation = 49.872784 kcal Electronic energy + Delta-G solvation = -20878.901638 eV Core-core repulsion = 17695.738694 eV Total energy + Delta-G solvation = -3183.162944 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.49086 -39.14489 -37.89791 -34.55595 -32.77990 -32.28254 -31.63572 -29.02560 -27.79975 -26.76495 -25.29163 -24.80910 -22.20899 -21.18306 -20.51406 -19.64496 -18.91569 -18.04525 -16.76392 -15.81258 -15.53992 -15.38690 -14.99115 -14.49208 -14.21699 -13.83852 -13.53820 -13.36757 -13.19400 -13.02469 -12.90056 -12.80949 -12.39954 -12.28286 -12.10845 -11.54643 -11.44436 -11.36616 -11.03624 -10.74794 -10.62091 -10.06170 -9.80816 -9.73341 -9.47314 -8.92323 -8.84764 -8.83429 -8.05827 -6.91899 -5.80855 -3.12995 1.43067 2.59109 2.95776 3.29536 3.36477 3.41417 3.43068 3.45539 4.41926 4.63196 4.85663 4.94291 5.10957 5.14900 5.24994 5.26692 5.31127 5.35402 5.58369 5.61799 5.67227 5.78230 5.84691 5.86491 6.00395 6.10603 6.20317 6.30712 6.37307 6.50684 6.59461 6.67414 6.73635 6.89235 7.16667 7.27501 7.30391 7.49840 7.63283 7.93922 8.29440 9.00813 9.67099 10.55877 11.36406 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024966 B = 0.003420 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.277162 B = 8184.878036 C = 9014.850262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.050 3.950 3 C -0.211 4.211 4 C -0.075 4.075 5 C -0.089 4.089 6 C -0.056 4.056 7 C 0.585 3.415 8 O -0.533 6.533 9 N -0.723 5.723 10 C 0.132 3.868 11 C -0.154 4.154 12 C 0.168 3.832 13 N -0.613 5.613 14 C -0.223 4.223 15 H 0.080 0.920 16 C -0.009 4.009 17 N -0.923 5.923 18 Si 0.912 3.088 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.129 3.871 23 N -0.537 5.537 24 H 0.416 0.584 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.140 0.860 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.394 0.606 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.028 0.972 37 H 0.071 0.929 38 H 0.253 0.747 39 H 0.046 0.954 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.813 16.992 -7.376 19.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.067 4.067 3 C -0.235 4.235 4 C -0.084 4.084 5 C -0.146 4.146 6 C -0.168 4.168 7 C 0.373 3.627 8 O -0.410 6.410 9 N -0.374 5.374 10 C 0.008 3.992 11 C -0.174 4.174 12 C 0.043 3.957 13 N -0.339 5.339 14 C -0.350 4.350 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.570 5.570 18 Si 0.743 3.257 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.002 3.998 23 N -0.134 5.134 24 H 0.253 0.747 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.102 0.898 28 H 0.158 0.842 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.228 0.772 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.107 0.893 36 H 0.046 0.954 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.093 16.833 -7.189 19.292 hybrid contribution -0.666 -1.689 0.501 1.884 sum -6.759 15.144 -6.688 17.882 Atomic orbital electron populations 1.20412 0.87735 1.03656 1.02945 1.20505 0.93611 0.86258 1.06344 1.20543 0.91842 0.97830 1.13277 1.19917 0.95445 0.91087 1.01935 1.20330 0.94704 0.97371 1.02190 1.20269 0.82901 0.94248 1.19396 1.17055 0.87423 0.81513 0.76719 1.90795 1.24175 1.75149 1.50860 1.45955 1.10532 1.05619 1.75254 1.21474 0.87008 0.88727 1.01997 1.23813 1.00434 0.90987 1.02175 1.22356 0.98897 0.84566 0.89885 1.45986 1.46743 1.02503 1.38652 1.19048 1.20315 0.81741 1.13946 0.90213 1.24780 0.99380 0.97954 0.98378 1.69810 1.29194 1.32402 1.25606 0.86115 0.77002 0.84223 0.78397 1.21584 1.21630 1.20601 1.22484 0.93472 0.90232 0.93574 1.41919 1.05494 1.08524 1.57443 0.74674 0.90682 0.91392 0.89840 0.84169 0.91602 0.90131 0.92221 0.77247 0.91716 0.91166 0.89344 0.95433 0.91084 0.93679 0.93617 0.94541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.41 36.00 0.37 -0.18 16 2 C 0.05 0.49 7.13 -81.95 -0.58 -0.10 16 3 C -0.21 -2.27 10.66 -39.98 -0.43 -2.70 16 4 C -0.08 -0.98 6.21 -104.16 -0.65 -1.62 16 5 C -0.09 -1.06 9.82 36.01 0.35 -0.71 16 6 C -0.06 -0.75 7.06 -81.98 -0.58 -1.33 16 7 C 0.59 8.99 7.79 -12.85 -0.10 8.89 16 8 O -0.53 -9.68 14.81 5.19 0.08 -9.61 16 9 N -0.72 -10.14 5.55 -61.62 -0.34 -10.48 16 10 C 0.13 2.05 5.51 -4.04 -0.02 2.03 16 11 C -0.15 -2.72 3.93 -89.69 -0.35 -3.07 16 12 C 0.17 3.83 7.08 -2.84 -0.02 3.81 16 13 N -0.61 -15.60 3.70 -177.70 -0.66 -16.26 16 14 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 15 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 17 N -0.92 -27.12 11.39 55.49 0.63 -26.49 16 18 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 C 0.13 2.58 8.51 -2.97 -0.03 2.55 16 23 N -0.54 -5.59 5.99 -5.69 -0.03 -5.63 16 24 H 0.42 3.36 8.19 -40.82 -0.33 3.03 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.10 6.50 -51.93 -0.34 0.76 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.39 4.68 7.60 -40.82 -0.31 4.37 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.20 7.87 -51.93 -0.41 0.79 16 35 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 37 H 0.07 1.76 7.17 -51.93 -0.37 1.39 16 38 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -33.66 335.30 -8.53 -42.19 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.95 Total: 3.36 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -2.28 Total: 0.84 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.40 Total: -58.85 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.66 -8.53 -42.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031776713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.060 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds