Wall clock time and date at job start Mon Mar 30 2020 01:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35459 * 125.56350 * 2 1 4 4 C 1.39828 * 107.86450 * 180.28913 * 3 2 1 5 5 C 1.50703 * 126.45738 * 179.73876 * 4 3 2 6 6 C 1.37873 * 107.08860 * 359.57688 * 4 3 2 7 7 C 1.46681 * 126.23758 * 180.12393 * 6 4 3 8 8 O 1.21698 * 119.99865 * 0.32314 * 7 6 4 9 9 N 1.34776 * 119.99956 * 180.33017 * 7 6 4 10 10 C 1.46501 * 119.99727 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47009 * 179.97438 * 10 9 7 12 12 C 1.53945 * 113.74183 * 273.74172 * 11 10 9 13 13 N 1.47813 * 86.03574 * 222.08449 * 12 11 10 14 14 C 1.36939 * 134.45570 * 204.64028 * 13 12 11 15 15 H 1.08004 * 120.00210 * 179.86494 * 14 13 12 16 16 C 1.38809 * 119.99916 * 359.87185 * 14 13 12 17 17 N 1.31622 * 120.00439 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99903 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47198 * 89.99859 * 18 16 14 20 20 H 1.48499 * 109.47200 * 209.99577 * 18 16 14 21 21 H 1.48499 * 109.47309 * 330.00014 * 18 16 14 22 22 C 1.47576 * 91.05150 * 24.55184 * 13 12 11 23 23 N 1.35538 * 125.56567 * 180.02562 * 2 1 3 24 24 H 0.96994 * 125.67541 * 359.97423 * 23 2 1 25 25 H 1.09000 * 109.47418 * 90.00264 * 1 2 3 26 26 H 1.09003 * 109.46632 * 209.99944 * 1 2 3 27 27 H 1.08999 * 109.47122 * 329.99096 * 1 2 3 28 28 H 1.08002 * 126.06353 * 0.02562 * 3 2 1 29 29 H 1.09003 * 109.46924 * 90.02536 * 5 4 3 30 30 H 1.09003 * 109.47294 * 210.01990 * 5 4 3 31 31 H 1.08996 * 109.47194 * 330.02559 * 5 4 3 32 32 H 0.96990 * 119.99923 * 359.97438 * 9 7 6 33 33 H 1.08997 * 109.47530 * 300.00120 * 10 9 7 34 34 H 1.09000 * 109.46954 * 59.99780 * 10 9 7 35 35 H 1.09003 * 112.94843 * 45.33453 * 11 10 9 36 36 H 1.09000 * 113.77075 * 336.34829 * 12 11 10 37 37 H 1.09001 * 113.77267 * 107.74505 * 12 11 10 38 38 H 0.96996 * 120.00360 * 180.02562 * 17 16 14 39 39 H 1.09006 * 113.76817 * 221.15692 * 22 13 12 40 40 H 1.09001 * 113.77631 * 89.75830 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6768 -0.0067 5 6 4.8485 1.5593 -0.0147 6 6 3.6122 -0.7018 -0.0010 7 6 4.7860 -1.5814 -0.0023 8 8 5.9050 -1.1029 -0.0030 9 7 4.6253 -2.9196 -0.0028 10 6 5.7977 -3.7980 -0.0046 11 6 5.3409 -5.2582 -0.0043 12 6 5.0700 -5.8225 1.4022 13 7 5.7570 -7.0441 0.9325 14 6 5.7186 -8.3647 1.2928 15 1 6.3366 -9.0838 0.7755 16 6 4.8854 -8.7792 2.3227 17 7 4.1326 -7.9029 2.9534 18 14 4.8325 -10.5807 2.8137 19 1 5.8485 -10.8370 3.8661 20 1 3.4830 -10.9116 3.3377 21 1 5.1241 -11.4258 1.6280 22 6 6.4986 -6.2699 -0.0816 23 7 2.2953 -1.1025 -0.0005 24 1 1.9834 -2.0209 -0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5140 28 1 1.9544 2.1269 0.0004 29 1 5.1489 1.7731 1.0111 30 1 5.6613 1.0501 -0.5326 31 1 4.6189 2.4929 -0.5281 32 1 3.7336 -3.3009 -0.0020 33 1 6.3956 -3.6043 -0.8952 34 1 6.3977 -3.6052 0.8847 35 1 4.5395 -5.4530 -0.7170 36 1 5.6013 -5.2975 2.1961 37 1 4.0122 -5.9685 1.6209 38 1 3.5506 -8.1924 3.6733 39 1 6.5792 -6.7724 -1.0456 40 1 7.4505 -5.8766 0.2753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031776713.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:52 Heat of formation + Delta-G solvation = 27.018930 kcal Electronic energy + Delta-G solvation = -20879.892656 eV Core-core repulsion = 17695.738694 eV Total energy + Delta-G solvation = -3184.153962 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.37873 -40.44923 -39.46770 -35.89304 -34.24784 -33.62805 -32.49619 -30.62379 -28.63437 -28.16635 -26.68667 -26.46873 -23.88957 -22.30333 -21.34008 -21.06917 -20.04043 -19.16099 -18.73591 -17.11504 -17.01039 -16.56672 -16.38348 -15.83545 -15.45103 -15.33252 -14.82464 -14.52330 -14.30212 -14.08688 -13.85657 -13.80225 -13.54352 -13.32081 -13.13596 -13.04877 -12.89765 -12.88700 -12.54336 -12.37821 -12.27739 -11.84794 -11.62366 -11.32022 -10.99077 -10.87664 -10.17985 -9.69639 -8.94952 -8.94279 -7.93023 -5.26320 0.44898 1.44417 1.46306 1.54834 1.75688 2.06445 2.22161 2.35308 2.45789 3.27749 3.36542 3.69144 3.89925 3.98403 4.04684 4.23490 4.30572 4.32102 4.56387 4.65986 4.75147 4.82519 4.83653 4.84174 4.85729 4.91381 4.97513 5.06201 5.16288 5.21548 5.22837 5.35607 5.50200 5.51577 5.60800 5.84223 5.91350 5.99764 6.45184 6.60119 6.90044 7.13866 7.58520 8.53958 9.23904 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024966 B = 0.003420 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.277162 B = 8184.878036 C = 9014.850262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.066 3.934 3 C -0.225 4.225 4 C -0.089 4.089 5 C -0.087 4.087 6 C -0.088 4.088 7 C 0.584 3.416 8 O -0.569 6.569 9 N -0.717 5.717 10 C 0.144 3.856 11 C -0.115 4.115 12 C 0.165 3.835 13 N -0.645 5.645 14 C -0.237 4.237 15 H 0.084 0.916 16 C -0.067 4.067 17 N -0.954 5.954 18 Si 0.979 3.021 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.267 1.267 22 C 0.126 3.874 23 N -0.531 5.531 24 H 0.425 0.575 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.162 0.838 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.405 0.595 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.105 0.895 36 H 0.010 0.990 37 H 0.045 0.955 38 H 0.248 0.752 39 H 0.064 0.936 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.145 17.415 -8.495 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.053 4.053 3 C -0.248 4.248 4 C -0.098 4.098 5 C -0.144 4.144 6 C -0.200 4.200 7 C 0.373 3.627 8 O -0.449 6.449 9 N -0.367 5.367 10 C 0.019 3.981 11 C -0.134 4.134 12 C 0.040 3.960 13 N -0.371 5.371 14 C -0.365 4.365 15 H 0.101 0.899 16 C -0.260 4.260 17 N -0.603 5.603 18 Si 0.807 3.193 19 H -0.216 1.216 20 H -0.219 1.219 21 H -0.192 1.192 22 C 0.001 3.999 23 N -0.129 5.129 24 H 0.265 0.735 25 H 0.108 0.892 26 H 0.096 0.904 27 H 0.117 0.883 28 H 0.180 0.820 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.241 0.759 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.028 0.972 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.426 17.247 -8.341 20.547 hybrid contribution -0.277 -1.747 0.831 1.954 sum -7.703 15.499 -7.510 18.867 Atomic orbital electron populations 1.20567 0.84846 1.04917 1.04287 1.21154 0.95246 0.85544 1.03349 1.20854 0.90919 0.99347 1.13726 1.20266 0.96717 0.91216 1.01613 1.20305 0.93955 0.98072 1.02062 1.20023 0.83431 0.94236 1.22324 1.17327 0.87672 0.81718 0.75933 1.90769 1.25678 1.75745 1.52695 1.45808 1.10648 1.05275 1.74994 1.21217 0.87444 0.87496 1.01904 1.23408 0.99685 0.91679 0.98673 1.22272 0.96909 0.84487 0.92342 1.46404 1.48244 1.02495 1.39992 1.19458 1.19857 0.83413 1.13812 0.89852 1.25621 0.99502 1.02094 0.98770 1.69993 1.30042 1.34148 1.26072 0.85075 0.76522 0.79556 0.78159 1.21613 1.21869 1.19164 1.22692 0.94153 0.90034 0.93002 1.41933 1.04566 1.09438 1.56950 0.73534 0.89151 0.90449 0.88292 0.82044 0.91771 0.92297 0.89967 0.75939 0.90365 0.92764 0.87730 0.97200 0.93627 0.94269 0.91826 0.93528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 10.41 71.23 0.74 -0.04 16 2 C 0.07 1.11 7.13 41.34 0.29 1.41 16 3 C -0.22 -4.39 10.66 22.01 0.23 -4.15 16 4 C -0.09 -2.24 6.21 -19.57 -0.12 -2.36 16 5 C -0.09 -2.06 9.82 71.24 0.70 -1.36 16 6 C -0.09 -2.32 7.06 40.35 0.28 -2.04 16 7 C 0.58 17.99 7.79 86.45 0.67 18.66 16 8 O -0.57 -21.12 14.81 -4.34 -0.06 -21.19 16 9 N -0.72 -19.68 5.55 -467.08 -2.59 -22.27 16 10 C 0.14 4.36 5.51 86.38 0.48 4.84 16 11 C -0.11 -3.93 3.93 -10.13 -0.04 -3.97 16 12 C 0.17 7.65 7.08 86.44 0.61 8.26 16 13 N -0.64 -32.86 3.70 -716.12 -2.65 -35.51 16 14 C -0.24 -13.32 10.70 84.03 0.90 -12.42 16 15 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 16 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 17 N -0.95 -57.13 11.39 21.65 0.25 -56.89 16 18 Si 0.98 45.53 29.55 68.60 2.03 47.55 16 19 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 C 0.13 4.90 8.51 86.49 0.74 5.64 16 23 N -0.53 -10.25 5.99 -171.92 -1.03 -11.28 16 24 H 0.43 6.18 8.19 -92.71 -0.76 5.42 16 25 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 29 H 0.06 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.65 6.50 -2.39 -0.02 1.64 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.41 9.24 7.60 -92.72 -0.70 8.53 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.05 1.85 7.87 -2.39 -0.02 1.84 16 35 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.01 0.50 7.92 -2.39 -0.02 0.48 16 37 H 0.05 2.33 7.17 -2.39 -0.02 2.31 16 38 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 39 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 40 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 Total: -1.00 -73.63 335.30 1.49 -72.14 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -0.41 Total: 18.33 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 5.96 Total: 9.11 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -6.03 Total: -125.95 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.06 Total: -21.19 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -73.63 1.49 -72.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031776713.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.161 kcal (2) G-P(sol) polarization free energy of solvation -73.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds