Wall clock time and date at job start Mon Mar 30 2020 01:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36768 * 125.80367 * 2 1 4 4 C 1.47268 * 126.93937 * 359.97438 * 3 2 1 5 5 O 1.21625 * 120.00123 * 359.71127 * 4 3 2 6 6 N 1.34778 * 119.99907 * 179.70904 * 4 3 2 7 7 C 1.46501 * 120.00016 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47379 * 179.97438 * 7 6 4 9 9 C 1.53495 * 114.20602 * 175.00131 * 8 7 6 10 10 N 1.47064 * 87.98647 * 87.71660 * 9 8 7 11 11 C 1.36929 * 136.05710 * 207.07951 * 10 9 8 12 12 H 1.08003 * 120.00152 * 6.50021 * 11 10 9 13 13 C 1.38818 * 120.00175 * 186.49548 * 11 10 9 14 14 N 1.31615 * 119.99847 * 6.43003 * 13 11 10 15 15 Si 1.86802 * 119.99925 * 186.42380 * 13 11 10 16 16 H 1.48502 * 109.46990 * 265.01960 * 15 13 11 17 17 H 1.48491 * 109.47236 * 25.02406 * 15 13 11 18 18 H 1.48506 * 109.46777 * 145.02360 * 15 13 11 19 19 C 1.47067 * 87.88549 * 27.33957 * 10 9 8 20 20 C 1.46681 * 106.12158 * 179.71744 * 3 2 1 21 21 C 1.34493 * 106.33060 * 0.26487 * 20 3 2 22 22 N 1.34655 * 125.80122 * 180.17144 * 2 1 3 23 23 C 1.46495 * 124.85536 * 0.02562 * 22 2 1 24 24 H 1.09000 * 109.47352 * 89.99533 * 1 2 3 25 25 H 1.09002 * 109.47007 * 209.99794 * 1 2 3 26 26 H 1.09007 * 109.47199 * 329.99519 * 1 2 3 27 27 H 0.96994 * 120.00340 * 359.97438 * 6 4 3 28 28 H 1.09001 * 109.46921 * 59.99536 * 7 6 4 29 29 H 1.08998 * 109.46807 * 300.00283 * 7 6 4 30 30 H 1.08998 * 113.27713 * 41.92709 * 8 7 6 31 31 H 1.08996 * 113.46596 * 332.93558 * 9 8 7 32 32 H 1.09007 * 113.51449 * 202.50808 * 9 8 7 33 33 H 0.97003 * 120.00226 * 179.97438 * 14 13 11 34 34 H 1.09005 * 113.46771 * 87.43754 * 19 10 9 35 35 H 1.09002 * 113.46911 * 217.87594 * 19 10 9 36 36 H 1.07999 * 126.83904 * 180.29533 * 20 3 2 37 37 H 1.07997 * 125.57354 * 180.02562 * 21 20 3 38 38 H 1.08994 * 109.47529 * 270.31760 * 23 22 2 39 39 H 1.09002 * 109.46750 * 30.31524 * 23 22 2 40 40 H 1.09004 * 109.47631 * 150.30793 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6839 2.7839 -0.0063 6 7 2.7849 3.5054 0.0055 7 6 2.3503 4.9045 0.0044 8 6 3.5766 5.8195 0.0127 9 6 3.2476 7.3138 -0.1097 10 7 3.1164 7.3517 1.3546 11 6 2.4239 8.1066 2.2632 12 1 1.7015 8.8336 1.9225 13 6 2.6502 7.9374 3.6223 14 7 3.6170 7.1455 4.0349 15 14 1.5826 8.8340 4.8656 16 1 2.2502 10.0968 5.2719 17 1 0.2655 9.1448 4.2543 18 1 1.3836 7.9731 6.0592 19 6 4.0613 6.2263 1.4140 20 6 3.6881 0.6152 0.0069 21 6 3.6095 -0.7274 0.0045 22 7 2.2946 -1.0921 -0.0033 23 6 1.8094 -2.4744 -0.0079 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 3.7310 3.2915 0.0105 28 1 1.7469 5.0981 0.8912 29 1 1.7568 5.0998 -0.8887 30 1 4.3713 5.4808 -0.6520 31 1 2.3129 7.5109 -0.6345 32 1 4.0770 7.9122 -0.4868 33 1 3.7755 7.0275 4.9846 34 1 5.1057 6.5373 1.4386 35 1 3.8198 5.4970 2.1872 36 1 4.5889 1.2110 0.0133 37 1 4.4497 -1.4060 0.0086 38 1 1.6833 -2.8187 1.0185 39 1 0.8522 -2.5216 -0.5272 40 1 2.5316 -3.1113 -0.5188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031957577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:34 Heat of formation + Delta-G solvation = 68.203768 kcal Electronic energy + Delta-G solvation = -21104.706824 eV Core-core repulsion = 17922.338771 eV Total energy + Delta-G solvation = -3182.368053 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.36801 -38.98702 -37.88894 -34.06012 -32.90519 -32.06558 -31.58514 -28.71807 -27.05161 -26.38780 -25.36116 -24.50747 -22.55088 -21.79091 -19.95939 -19.37212 -18.30230 -17.26657 -16.65596 -15.77619 -15.59653 -15.47546 -14.94823 -14.52862 -14.28333 -13.79005 -13.66535 -13.23696 -13.15343 -12.88366 -12.74166 -12.63045 -12.44999 -12.31241 -12.07813 -11.57254 -11.40848 -11.05573 -10.89085 -10.67369 -10.44099 -9.85499 -9.72809 -9.44888 -9.14676 -8.71043 -8.70377 -8.46128 -8.11512 -6.80655 -5.71344 -3.01519 1.85551 2.41053 2.68990 3.44761 3.50133 3.52595 3.79457 3.89896 4.47040 4.53472 4.69058 4.81449 4.84778 5.05042 5.17158 5.30148 5.37906 5.41253 5.48300 5.53234 5.61156 5.70187 5.88195 5.96986 6.12508 6.18529 6.31924 6.45597 6.63261 6.68813 6.75745 6.82803 6.97624 7.05422 7.16376 7.25863 7.35857 7.60900 8.03939 8.07579 8.77299 9.10776 9.77527 10.72398 11.47472 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023546 B = 0.003693 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.866960 B = 7580.093167 C = 7903.260137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.099 3.901 3 C -0.230 4.230 4 C 0.587 3.413 5 O -0.556 6.556 6 N -0.718 5.718 7 C 0.153 3.847 8 C -0.161 4.161 9 C 0.126 3.874 10 N -0.608 5.608 11 C -0.217 4.217 12 H 0.081 0.919 13 C -0.008 4.008 14 N -0.919 5.919 15 Si 0.910 3.090 16 H -0.290 1.290 17 H -0.279 1.279 18 H -0.290 1.290 19 C 0.166 3.834 20 C -0.165 4.165 21 C -0.023 4.023 22 N -0.449 5.449 23 C 0.069 3.931 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.397 0.603 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.253 0.747 34 H 0.028 0.972 35 H 0.062 0.938 36 H 0.146 0.854 37 H 0.165 0.835 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.165 -19.976 -10.530 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.017 4.017 3 C -0.239 4.239 4 C 0.375 3.625 5 O -0.436 6.436 6 N -0.368 5.368 7 C 0.030 3.970 8 C -0.181 4.181 9 C -0.001 4.001 10 N -0.334 5.334 11 C -0.345 4.345 12 H 0.099 0.901 13 C -0.204 4.204 14 N -0.566 5.566 15 Si 0.741 3.259 16 H -0.217 1.217 17 H -0.205 1.205 18 H -0.216 1.216 19 C 0.040 3.960 20 C -0.189 4.189 21 C -0.149 4.149 22 N -0.126 5.126 23 C -0.073 4.073 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.122 0.878 27 H 0.231 0.769 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.164 0.836 37 H 0.183 0.817 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.885 -19.981 -10.195 22.449 hybrid contribution 0.382 0.392 0.815 0.981 sum -0.503 -19.589 -9.380 21.725 Atomic orbital electron populations 1.20551 0.87188 1.04112 1.03164 1.20309 0.93734 0.85153 1.02480 1.20228 0.93156 0.92237 1.18317 1.17295 0.85398 0.83943 0.75817 1.90716 1.16728 1.84480 1.51709 1.45794 1.09519 1.06438 1.75038 1.20960 0.95851 0.77823 1.02332 1.23308 0.97184 0.96242 1.01391 1.22360 0.97987 0.91640 0.88144 1.45724 1.49936 1.37654 1.00131 1.18950 1.14189 1.15566 0.85751 0.90148 1.24804 0.98507 1.00350 0.96770 1.69844 1.31707 1.41170 1.13910 0.86122 0.79895 0.78713 0.81194 1.21730 1.20468 1.21639 1.22071 0.92517 0.89995 0.91418 1.22051 0.95940 0.93528 1.07370 1.21649 0.85303 0.96250 1.11648 1.43523 1.06059 1.05983 1.57040 1.22054 1.01583 0.80252 1.03387 0.90703 0.92202 0.87848 0.76922 0.90155 0.92330 0.91081 0.94023 0.94795 0.93748 0.95383 0.91962 0.83611 0.81739 0.90822 0.89763 0.89694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.26 36.00 0.33 -0.73 16 2 C 0.10 1.29 6.89 -81.89 -0.56 0.73 16 3 C -0.23 -3.44 6.29 -103.35 -0.65 -4.09 16 4 C 0.59 10.49 7.81 -12.59 -0.10 10.39 16 5 O -0.56 -11.57 14.82 5.26 0.08 -11.49 16 6 N -0.72 -12.01 5.55 -61.43 -0.34 -12.35 16 7 C 0.15 2.91 5.52 -4.04 -0.02 2.89 16 8 C -0.16 -3.01 4.17 -89.97 -0.37 -3.39 16 9 C 0.13 2.62 8.25 -8.51 -0.07 2.55 16 10 N -0.61 -15.98 3.60 -184.60 -0.67 -16.64 16 11 C -0.22 -6.28 10.73 -15.06 -0.16 -6.44 16 12 H 0.08 2.25 7.84 -52.48 -0.41 1.83 16 13 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 14 N -0.92 -28.06 11.81 55.49 0.66 -27.41 16 15 Si 0.91 22.87 29.56 -169.99 -5.02 17.85 16 16 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 18 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 19 C 0.17 3.93 6.75 -8.37 -0.06 3.87 16 20 C -0.16 -1.98 10.56 -37.50 -0.40 -2.38 16 21 C -0.02 -0.23 11.34 -16.82 -0.19 -0.42 16 22 N -0.45 -4.53 3.09 -119.89 -0.37 -4.90 16 23 C 0.07 0.38 10.60 59.84 0.63 1.02 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.51 7.59 -51.93 -0.39 0.12 16 26 H 0.10 1.46 6.47 -51.93 -0.34 1.13 16 27 H 0.40 5.61 7.60 -40.82 -0.31 5.30 16 28 H 0.08 1.86 7.93 -51.93 -0.41 1.45 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.04 0.83 8.12 -51.93 -0.42 0.41 16 32 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.64 7.56 -51.93 -0.39 1.24 16 36 H 0.15 1.47 7.70 -52.49 -0.40 1.07 16 37 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.38 7.51 -51.93 -0.39 -0.01 16 40 H 0.08 0.30 8.13 -51.93 -0.42 -0.12 16 LS Contribution 335.07 15.07 5.05 5.05 Total: -1.00 -35.73 335.07 -8.32 -44.05 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -5.99 Total: 2.17 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -1.71 Total: 3.69 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -0.72 Total: -61.30 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.73 -8.32 -44.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031957577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.250 kcal (2) G-P(sol) polarization free energy of solvation -35.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds