Wall clock time and date at job start Mon Mar 30 2020 01:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36768 * 125.80367 * 2 1 4 4 C 1.47268 * 126.93937 * 359.97438 * 3 2 1 5 5 O 1.21625 * 120.00123 * 359.71127 * 4 3 2 6 6 N 1.34778 * 119.99907 * 179.70904 * 4 3 2 7 7 C 1.46501 * 120.00016 * 179.97438 * 6 4 3 8 8 C 1.53001 * 109.47379 * 179.97438 * 7 6 4 9 9 C 1.53495 * 114.20602 * 175.00131 * 8 7 6 10 10 N 1.47064 * 87.98647 * 87.71660 * 9 8 7 11 11 C 1.36929 * 136.05710 * 207.07951 * 10 9 8 12 12 H 1.08003 * 120.00152 * 6.50021 * 11 10 9 13 13 C 1.38818 * 120.00175 * 186.49548 * 11 10 9 14 14 N 1.31615 * 119.99847 * 6.43003 * 13 11 10 15 15 Si 1.86802 * 119.99925 * 186.42380 * 13 11 10 16 16 H 1.48502 * 109.46990 * 265.01960 * 15 13 11 17 17 H 1.48491 * 109.47236 * 25.02406 * 15 13 11 18 18 H 1.48506 * 109.46777 * 145.02360 * 15 13 11 19 19 C 1.47067 * 87.88549 * 27.33957 * 10 9 8 20 20 C 1.46681 * 106.12158 * 179.71744 * 3 2 1 21 21 C 1.34493 * 106.33060 * 0.26487 * 20 3 2 22 22 N 1.34655 * 125.80122 * 180.17144 * 2 1 3 23 23 C 1.46495 * 124.85536 * 0.02562 * 22 2 1 24 24 H 1.09000 * 109.47352 * 89.99533 * 1 2 3 25 25 H 1.09002 * 109.47007 * 209.99794 * 1 2 3 26 26 H 1.09007 * 109.47199 * 329.99519 * 1 2 3 27 27 H 0.96994 * 120.00340 * 359.97438 * 6 4 3 28 28 H 1.09001 * 109.46921 * 59.99536 * 7 6 4 29 29 H 1.08998 * 109.46807 * 300.00283 * 7 6 4 30 30 H 1.08998 * 113.27713 * 41.92709 * 8 7 6 31 31 H 1.08996 * 113.46596 * 332.93558 * 9 8 7 32 32 H 1.09007 * 113.51449 * 202.50808 * 9 8 7 33 33 H 0.97003 * 120.00226 * 179.97438 * 14 13 11 34 34 H 1.09005 * 113.46771 * 87.43754 * 19 10 9 35 35 H 1.09002 * 113.46911 * 217.87594 * 19 10 9 36 36 H 1.07999 * 126.83904 * 180.29533 * 20 3 2 37 37 H 1.07997 * 125.57354 * 180.02562 * 21 20 3 38 38 H 1.08994 * 109.47529 * 270.31760 * 23 22 2 39 39 H 1.09002 * 109.46750 * 30.31524 * 23 22 2 40 40 H 1.09004 * 109.47631 * 150.30793 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6839 2.7839 -0.0063 6 7 2.7849 3.5054 0.0055 7 6 2.3503 4.9045 0.0044 8 6 3.5766 5.8195 0.0127 9 6 3.2476 7.3138 -0.1097 10 7 3.1164 7.3517 1.3546 11 6 2.4239 8.1066 2.2632 12 1 1.7015 8.8336 1.9225 13 6 2.6502 7.9374 3.6223 14 7 3.6170 7.1455 4.0349 15 14 1.5826 8.8340 4.8656 16 1 2.2502 10.0968 5.2719 17 1 0.2655 9.1448 4.2543 18 1 1.3836 7.9731 6.0592 19 6 4.0613 6.2263 1.4140 20 6 3.6881 0.6152 0.0069 21 6 3.6095 -0.7274 0.0045 22 7 2.2946 -1.0921 -0.0033 23 6 1.8094 -2.4744 -0.0079 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5139 27 1 3.7310 3.2915 0.0105 28 1 1.7469 5.0981 0.8912 29 1 1.7568 5.0998 -0.8887 30 1 4.3713 5.4808 -0.6520 31 1 2.3129 7.5109 -0.6345 32 1 4.0770 7.9122 -0.4868 33 1 3.7755 7.0275 4.9846 34 1 5.1057 6.5373 1.4386 35 1 3.8198 5.4970 2.1872 36 1 4.5889 1.2110 0.0133 37 1 4.4497 -1.4060 0.0086 38 1 1.6833 -2.8187 1.0185 39 1 0.8522 -2.5216 -0.5272 40 1 2.5316 -3.1113 -0.5188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031957577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:33 Heat of formation + Delta-G solvation = 43.641275 kcal Electronic energy + Delta-G solvation = -21105.771934 eV Core-core repulsion = 17922.338771 eV Total energy + Delta-G solvation = -3183.433163 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.24132 -40.52285 -39.51097 -35.59849 -34.23217 -33.60709 -32.49037 -30.47960 -28.43530 -27.16220 -26.74624 -26.30825 -24.33034 -23.00460 -21.13500 -20.66330 -19.64869 -18.68649 -18.23154 -17.11950 -16.89266 -16.64308 -16.54689 -16.03408 -15.64539 -15.48310 -14.89172 -14.54154 -14.17586 -14.07745 -13.99180 -13.80016 -13.59186 -13.35979 -13.12855 -12.97703 -12.82777 -12.74311 -12.56345 -12.43804 -12.27630 -11.81310 -11.59679 -11.08219 -10.89566 -10.76033 -10.02487 -9.46153 -9.06584 -8.90354 -7.92565 -5.22779 0.78331 1.42894 1.45620 1.54619 1.56018 1.92980 2.47209 2.50153 2.64329 3.31276 3.52926 3.67905 3.87132 3.97315 4.02384 4.08215 4.24926 4.43115 4.46990 4.54958 4.66035 4.67844 4.75002 4.76652 4.80940 4.90645 4.99757 5.01805 5.08673 5.11085 5.24400 5.31398 5.50952 5.52560 5.67088 5.83560 5.93686 6.13543 6.41483 6.77483 6.91566 7.43237 7.60594 8.62736 9.26588 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.023546 B = 0.003693 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.866960 B = 7580.093167 C = 7903.260137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.091 3.909 3 C -0.271 4.271 4 C 0.579 3.421 5 O -0.598 6.598 6 N -0.711 5.711 7 C 0.165 3.835 8 C -0.124 4.124 9 C 0.125 3.875 10 N -0.643 5.643 11 C -0.228 4.228 12 H 0.083 0.917 13 C -0.069 4.069 14 N -0.953 5.953 15 Si 0.976 3.024 16 H -0.283 1.283 17 H -0.269 1.269 18 H -0.295 1.295 19 C 0.164 3.836 20 C -0.185 4.185 21 C -0.008 4.008 22 N -0.443 5.443 23 C 0.059 3.941 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.068 0.932 27 H 0.411 0.589 28 H 0.030 0.970 29 H 0.067 0.933 30 H 0.119 0.881 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.247 0.753 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.159 0.841 37 H 0.206 0.794 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.883 -21.995 -11.914 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.028 4.028 3 C -0.281 4.281 4 C 0.370 3.630 5 O -0.481 6.481 6 N -0.361 5.361 7 C 0.041 3.959 8 C -0.143 4.143 9 C -0.001 4.001 10 N -0.369 5.369 11 C -0.357 4.357 12 H 0.101 0.899 13 C -0.262 4.262 14 N -0.602 5.602 15 Si 0.804 3.196 16 H -0.210 1.210 17 H -0.194 1.194 18 H -0.222 1.222 19 C 0.038 3.962 20 C -0.208 4.208 21 C -0.134 4.134 22 N -0.118 5.118 23 C -0.081 4.081 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.087 0.913 27 H 0.247 0.753 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.137 0.863 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.177 0.823 37 H 0.222 0.778 38 H 0.104 0.896 39 H 0.113 0.887 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.137 -22.023 -11.621 24.901 hybrid contribution 0.158 0.915 1.185 1.505 sum 0.021 -21.107 -10.436 23.546 Atomic orbital electron populations 1.20486 0.86722 1.03856 1.03558 1.20486 0.94390 0.85862 1.02051 1.20211 0.95417 0.90943 1.21551 1.17876 0.84903 0.85411 0.74824 1.90681 1.18399 1.85309 1.53713 1.45650 1.10264 1.05345 1.74859 1.20646 0.95602 0.79405 1.00275 1.23041 0.97604 0.95147 0.98532 1.22571 0.99220 0.93147 0.85151 1.46079 1.50283 1.38113 1.02447 1.19341 1.14323 1.15209 0.86783 0.89914 1.25641 1.00119 1.01758 0.98670 1.70019 1.33485 1.42991 1.13672 0.85095 0.78629 0.77456 0.78409 1.20990 1.19362 1.22184 1.22050 0.91976 0.88850 0.93336 1.22291 0.95056 0.94844 1.08620 1.22274 0.86173 0.96103 1.08881 1.43840 1.05884 1.06979 1.55134 1.22437 1.02970 0.77891 1.04800 0.89955 0.89185 0.91272 0.75303 0.95170 0.91512 0.86314 0.93040 0.92588 0.94396 0.95718 0.95676 0.82345 0.77764 0.89625 0.88694 0.86975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.00 9.26 71.23 0.66 -1.34 16 2 C 0.09 2.27 6.89 41.78 0.29 2.56 16 3 C -0.27 -8.11 6.29 -19.04 -0.12 -8.23 16 4 C 0.58 21.40 7.81 86.62 0.68 22.08 16 5 O -0.60 -26.26 14.82 -4.11 -0.06 -26.32 16 6 N -0.71 -24.07 5.55 -466.51 -2.59 -26.66 16 7 C 0.16 6.35 5.52 86.38 0.48 6.83 16 8 C -0.12 -4.48 4.17 -10.37 -0.04 -4.53 16 9 C 0.12 5.04 8.25 83.18 0.69 5.72 16 10 N -0.64 -34.22 3.60 -737.95 -2.66 -36.88 16 11 C -0.23 -13.45 10.73 84.04 0.90 -12.55 16 12 H 0.08 4.68 7.84 -2.91 -0.02 4.65 16 13 C -0.07 -4.12 5.50 84.86 0.47 -3.66 16 14 N -0.95 -60.09 11.81 21.65 0.26 -59.83 16 15 Si 0.98 48.10 29.56 68.60 2.03 50.12 16 16 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 17 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 19 C 0.16 7.88 6.75 83.27 0.56 8.44 16 20 C -0.18 -4.16 10.56 23.62 0.25 -3.91 16 21 C -0.01 -0.13 11.34 83.12 0.94 0.81 16 22 N -0.44 -7.69 3.09 -533.21 -1.65 -9.34 16 23 C 0.06 0.43 10.60 127.77 1.35 1.78 16 24 H 0.08 1.68 8.14 -2.39 -0.02 1.67 16 25 H 0.09 1.40 7.59 -2.39 -0.02 1.38 16 26 H 0.07 2.07 6.47 -2.38 -0.02 2.05 16 27 H 0.41 11.39 7.60 -92.71 -0.70 10.68 16 28 H 0.03 1.47 7.93 -2.39 -0.02 1.45 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 31 H 0.05 1.98 8.12 -2.39 -0.02 1.96 16 32 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 33 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 34 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.02 1.37 7.56 -2.39 -0.02 1.35 16 36 H 0.16 2.94 7.70 -2.91 -0.02 2.92 16 37 H 0.21 1.67 8.06 -2.91 -0.02 1.64 16 38 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.09 0.52 7.51 -2.39 -0.02 0.50 16 40 H 0.11 0.25 8.13 -2.38 -0.02 0.24 16 Total: -1.00 -82.04 335.07 2.76 -79.28 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.33 Total: 15.61 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 7.10 Total: 14.01 kcal Atomic # 7 Polarization: -126.06 SS G_CDS: -6.64 Total: -132.70 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.06 Total: -26.32 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.12 kcal Total: -82.04 2.76 -79.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031957577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.918 kcal (2) G-P(sol) polarization free energy of solvation -82.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds