Wall clock time and date at job start Mon Mar 30 2020 01:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34491 * 125.57035 * 2 1 4 4 C 1.46681 * 106.32796 * 179.97438 * 3 2 1 5 5 C 1.47268 * 126.93846 * 179.97438 * 4 3 2 6 6 O 1.21625 * 120.00123 * 180.02562 * 5 4 3 7 7 N 1.34778 * 119.99907 * 0.02872 * 5 4 3 8 8 C 1.46501 * 120.00016 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47379 * 179.97438 * 8 7 5 10 10 C 1.53495 * 114.20602 * 175.00131 * 9 8 7 11 11 N 1.47064 * 87.98647 * 87.71660 * 10 9 8 12 12 C 1.36929 * 136.05710 * 207.07951 * 11 10 9 13 13 H 1.08003 * 120.00152 * 6.50021 * 12 11 10 14 14 C 1.38818 * 120.00175 * 186.49548 * 12 11 10 15 15 N 1.31615 * 119.99847 * 6.43003 * 14 12 11 16 16 Si 1.86802 * 119.99925 * 186.42380 * 14 12 11 17 17 H 1.48502 * 109.46990 * 265.01960 * 16 14 12 18 18 H 1.48491 * 109.47236 * 25.02406 * 16 14 12 19 19 H 1.48506 * 109.46777 * 145.02360 * 16 14 12 20 20 C 1.47067 * 87.88549 * 27.33957 * 11 10 9 21 21 C 1.36768 * 106.12158 * 0.24242 * 4 3 2 22 22 C 1.50694 * 125.80367 * 179.71744 * 21 4 3 23 23 N 1.34658 * 108.39282 * 359.60939 * 21 4 3 24 24 H 0.96998 * 124.85197 * 180.14308 * 23 21 4 25 25 H 1.08993 * 109.47179 * 90.02737 * 1 2 3 26 26 H 1.08998 * 109.46726 * 210.02794 * 1 2 3 27 27 H 1.09003 * 109.46718 * 330.02137 * 1 2 3 28 28 H 1.07993 * 126.82937 * 359.95847 * 3 2 1 29 29 H 0.96994 * 120.00340 * 359.97438 * 7 5 4 30 30 H 1.09001 * 109.46921 * 59.99536 * 8 7 5 31 31 H 1.08998 * 109.46807 * 300.00283 * 8 7 5 32 32 H 1.08998 * 113.27713 * 41.92709 * 9 8 7 33 33 H 1.08996 * 113.46596 * 332.93558 * 10 9 8 34 34 H 1.09007 * 113.51449 * 202.50808 * 10 9 8 35 35 H 0.97003 * 120.00226 * 179.97438 * 15 14 12 36 36 H 1.09005 * 113.46771 * 87.43754 * 20 11 10 37 37 H 1.09002 * 113.46911 * 217.87594 * 20 11 10 38 38 H 1.09003 * 109.46792 * 90.00023 * 22 21 4 39 39 H 1.08997 * 109.47460 * 209.99842 * 22 21 4 40 40 H 1.09007 * 109.47423 * 330.00270 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2894 1.0940 0.0000 4 6 3.6743 0.6105 0.0006 5 6 4.8978 1.4302 0.0003 6 8 5.9892 0.8936 0.0005 7 7 4.8080 2.7750 0.0000 8 6 6.0251 3.5904 0.0003 9 6 5.6460 5.0727 -0.0009 10 6 6.8411 6.0281 0.1213 11 7 6.9622 5.9809 -1.3436 12 6 7.9722 6.1367 -2.2550 13 1 8.9921 6.2471 -1.9172 14 6 7.6853 6.1527 -3.6131 15 7 6.4342 6.1457 -4.0215 16 14 9.0751 6.1845 -4.8609 17 1 9.3477 7.5879 -5.2625 18 1 10.2970 5.5963 -4.2560 19 1 8.6850 5.3944 -6.0563 20 6 5.5198 5.6993 -1.3993 21 6 3.5998 -0.7551 -0.0046 22 6 4.7722 -1.7019 -0.0121 23 7 2.3008 -1.1098 0.0005 24 1 1.9758 -2.0237 0.0004 25 1 -0.3633 -0.0005 -1.0276 26 1 -0.3633 -0.8897 0.5143 27 1 -0.3633 0.8902 0.5135 28 1 1.9629 2.1233 -0.0006 29 1 3.9376 3.2030 -0.0005 30 1 6.6133 3.3654 -0.8894 31 1 6.6126 3.3659 0.8905 32 1 4.8171 5.3058 0.6675 33 1 7.6939 5.5921 0.6416 34 1 6.5731 7.0132 0.5033 35 1 6.2336 6.1573 -4.9705 36 1 4.9026 6.5975 -1.4183 37 1 5.2469 4.9832 -2.1745 38 1 5.0581 -1.9342 1.0138 39 1 4.4941 -2.6205 -0.5287 40 1 5.6125 -1.2357 -0.5267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032012409.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:28 Heat of formation + Delta-G solvation = 54.353900 kcal Electronic energy + Delta-G solvation = -21064.538464 eV Core-core repulsion = 17881.569835 eV Total energy + Delta-G solvation = -3182.968629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.35099 -38.98408 -37.89033 -34.08667 -32.68789 -32.12900 -31.12698 -29.30552 -28.42121 -26.14103 -24.68144 -24.48654 -22.60835 -21.61090 -20.42435 -19.59362 -18.30113 -16.98855 -16.67671 -15.76877 -15.43303 -15.28271 -14.88623 -14.43585 -13.97986 -13.83435 -13.69288 -13.37375 -13.32181 -12.97201 -12.65193 -12.46974 -12.39086 -12.28691 -12.18271 -11.55791 -11.40659 -11.06109 -10.89766 -10.67846 -10.44608 -9.86004 -9.73407 -9.46301 -9.15322 -8.88862 -8.71271 -8.46541 -8.02288 -6.81142 -5.71847 -3.02013 1.85028 2.32763 3.00045 3.44442 3.49849 3.52272 3.77975 3.87651 4.53060 4.65999 4.81228 4.96740 5.17232 5.22749 5.29243 5.36238 5.40363 5.46597 5.53029 5.59204 5.62317 5.70202 5.79822 5.97689 6.11805 6.20184 6.31682 6.45015 6.62461 6.68199 6.75042 6.81830 6.90492 7.02286 7.25267 7.35216 7.36380 7.60385 8.03416 8.06086 8.75561 9.10340 9.77090 10.71907 11.47026 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.021277 B = 0.003744 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.635654 B = 7476.515482 C = 7635.529663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.005 3.995 3 C -0.163 4.163 4 C -0.226 4.226 5 C 0.586 3.414 6 O -0.555 6.555 7 N -0.718 5.718 8 C 0.153 3.847 9 C -0.161 4.161 10 C 0.126 3.874 11 N -0.608 5.608 12 C -0.217 4.217 13 H 0.081 0.919 14 C -0.007 4.007 15 N -0.920 5.920 16 Si 0.910 3.090 17 H -0.290 1.290 18 H -0.279 1.279 19 H -0.290 1.290 20 C 0.166 3.834 21 C 0.101 3.899 22 C -0.094 4.094 23 N -0.552 5.552 24 H 0.412 0.588 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.145 0.855 29 H 0.397 0.603 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.042 0.958 34 H 0.035 0.965 35 H 0.253 0.747 36 H 0.028 0.972 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.232 -14.115 10.456 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 C -0.187 4.187 4 C -0.236 4.236 5 C 0.375 3.625 6 O -0.436 6.436 7 N -0.368 5.368 8 C 0.030 3.970 9 C -0.181 4.181 10 C -0.001 4.001 11 N -0.334 5.334 12 C -0.345 4.345 13 H 0.099 0.901 14 C -0.204 4.204 15 N -0.567 5.567 16 Si 0.741 3.259 17 H -0.217 1.217 18 H -0.205 1.205 19 H -0.216 1.216 20 C 0.040 3.960 21 C -0.016 4.016 22 C -0.151 4.151 23 N -0.149 5.149 24 H 0.248 0.752 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.163 0.837 29 H 0.231 0.769 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.337 -14.544 10.115 21.588 hybrid contribution -0.051 0.150 -0.806 0.821 sum -12.388 -14.394 9.310 21.150 Atomic orbital electron populations 1.20311 0.87853 1.03167 1.02704 1.20180 0.93380 0.86043 1.10743 1.21832 0.90936 0.97798 1.08154 1.20219 0.93110 0.92266 1.17981 1.17302 0.87568 0.81809 0.75856 1.90719 1.28681 1.72500 1.51663 1.45797 1.10240 1.05729 1.74988 1.20963 0.85752 0.87898 1.02359 1.23308 0.99488 0.93954 1.01385 1.22360 0.94448 0.95189 0.88134 1.45722 1.04891 1.82752 1.00063 1.18952 0.86505 1.43280 0.85730 0.90144 1.24800 0.96434 1.02380 0.96780 1.69844 1.16272 1.56500 1.14049 0.86125 0.81209 0.77390 0.81222 1.21718 1.20462 1.21638 1.22073 0.86423 0.96082 0.91444 1.20289 0.84729 0.94351 1.02228 1.20566 0.94887 0.96342 1.03306 1.41493 1.05358 1.08606 1.59411 0.75205 0.91021 0.91980 0.89997 0.83715 0.76922 0.90143 0.92317 0.91080 0.94019 0.94791 0.93739 0.95377 0.91955 0.90608 0.92112 0.87798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.41 36.01 0.37 -0.14 16 2 C 0.01 0.05 7.13 -81.86 -0.58 -0.53 16 3 C -0.16 -1.96 10.45 -37.50 -0.39 -2.35 16 4 C -0.23 -3.32 6.29 -103.35 -0.65 -3.97 16 5 C 0.59 10.36 7.81 -12.59 -0.10 10.27 16 6 O -0.56 -11.45 14.82 5.26 0.08 -11.37 16 7 N -0.72 -11.91 5.55 -61.43 -0.34 -12.25 16 8 C 0.15 2.89 5.52 -4.04 -0.02 2.87 16 9 C -0.16 -3.00 4.17 -89.97 -0.37 -3.38 16 10 C 0.13 2.61 8.25 -8.51 -0.07 2.54 16 11 N -0.61 -15.92 3.60 -184.60 -0.67 -16.59 16 12 C -0.22 -6.27 10.73 -15.06 -0.16 -6.43 16 13 H 0.08 2.24 7.84 -52.48 -0.41 1.83 16 14 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 15 N -0.92 -28.04 11.81 55.49 0.66 -27.38 16 16 Si 0.91 22.83 29.56 -169.99 -5.02 17.80 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 C 0.17 3.91 6.75 -8.37 -0.06 3.85 16 21 C 0.10 1.26 7.17 -81.89 -0.59 0.67 16 22 C -0.09 -1.03 9.88 36.00 0.36 -0.67 16 23 N -0.55 -5.19 5.90 -5.42 -0.03 -5.22 16 24 H 0.41 2.45 8.96 -40.82 -0.37 2.08 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.15 1.49 7.69 -52.49 -0.40 1.08 16 29 H 0.40 5.58 7.60 -40.82 -0.31 5.27 16 30 H 0.08 1.86 7.93 -51.93 -0.41 1.44 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.04 0.83 8.12 -51.93 -0.42 0.41 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 1.63 7.56 -51.93 -0.39 1.24 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 1.43 6.47 -51.93 -0.34 1.10 16 LS Contribution 336.37 15.07 5.07 5.07 Total: -1.00 -35.33 336.37 -8.62 -43.95 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.99 Total: 3.58 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -2.36 Total: 2.41 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.38 Total: -61.44 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.33 -8.62 -43.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032012409.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.300 kcal (2) G-P(sol) polarization free energy of solvation -35.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds