Wall clock time and date at job start Mon Mar 30 2020 01:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34659 * 125.80134 * 2 1 4 4 H 0.96993 * 124.85381 * 0.02562 * 3 2 1 5 5 C 1.36446 * 110.29670 * 180.29529 * 3 2 1 6 6 C 1.34487 * 108.85689 * 359.74433 * 5 3 2 7 7 C 1.36772 * 125.80126 * 179.86849 * 2 1 3 8 8 C 1.47264 * 126.94231 * 359.97438 * 7 2 1 9 9 O 1.21628 * 119.99410 * 34.86383 * 8 7 2 10 10 N 1.34768 * 120.00252 * 214.85399 * 8 7 2 11 11 C 1.46503 * 120.00253 * 355.79779 * 10 8 7 12 12 C 1.46505 * 119.99865 * 175.79655 * 10 8 7 13 13 H 1.08995 * 110.78164 * 358.21243 * 12 10 8 14 14 C 1.55158 * 110.71586 * 234.97632 * 12 10 8 15 15 C 1.55136 * 101.48273 * 205.96831 * 14 12 10 16 16 N 1.47419 * 104.72289 * 37.30108 * 15 14 12 17 17 C 1.36930 * 125.65318 * 155.81841 * 16 15 14 18 18 H 1.07997 * 120.00329 * 185.30885 * 17 16 15 19 19 C 1.38815 * 119.99460 * 5.30183 * 17 16 15 20 20 N 1.31616 * 120.00029 * 34.93849 * 19 17 16 21 21 Si 1.86801 * 120.00065 * 214.92970 * 19 17 16 22 22 H 1.48497 * 109.47066 * 180.02562 * 21 19 17 23 23 H 1.48506 * 109.47250 * 300.00602 * 21 19 17 24 24 H 1.48505 * 109.46861 * 60.00446 * 21 19 17 25 25 C 1.47029 * 108.70220 * 335.55022 * 16 15 14 26 26 H 1.08999 * 109.47350 * 270.13333 * 1 2 3 27 27 H 1.09003 * 109.46987 * 30.13981 * 1 2 3 28 28 H 1.09004 * 109.46778 * 150.13033 * 1 2 3 29 29 H 1.07998 * 125.57641 * 179.77302 * 5 3 2 30 30 H 1.08004 * 126.83234 * 180.02562 * 6 5 3 31 31 H 1.08993 * 109.46853 * 275.56998 * 11 10 8 32 32 H 1.09003 * 109.46811 * 35.57079 * 11 10 8 33 33 H 1.08995 * 109.47098 * 155.56625 * 11 10 8 34 34 H 1.08996 * 111.00836 * 324.20749 * 14 12 10 35 35 H 1.09002 * 111.00314 * 88.03008 * 14 12 10 36 36 H 1.08996 * 110.49704 * 278.45560 * 15 14 12 37 37 H 1.09006 * 110.33948 * 156.06055 * 15 14 12 38 38 H 0.96997 * 120.00090 * 355.38158 * 20 19 17 39 39 H 1.08996 * 109.88455 * 120.70694 * 25 16 15 40 40 H 1.09004 * 109.88170 * 241.87533 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9734 2.0073 0.0004 5 6 3.6095 0.7274 -0.0066 6 6 3.6882 -0.6151 -0.0053 7 6 2.3071 -1.1093 0.0025 8 6 1.8702 -2.5156 0.0063 9 8 0.8642 -2.8414 -0.5947 10 7 2.5852 -3.4416 0.6754 11 6 3.8456 -3.0675 1.3218 12 6 2.1020 -4.8223 0.7563 13 1 1.1408 -4.9258 0.2530 14 6 1.9998 -5.2822 2.2347 15 6 2.1589 -6.8188 2.0917 16 7 3.1534 -6.9942 1.0177 17 6 3.9544 -8.0909 0.8429 18 1 4.7131 -8.0885 0.0744 19 6 3.7912 -9.2057 1.6537 20 7 2.5895 -9.5495 2.0658 21 14 5.2773 -10.2181 2.1598 22 1 4.8379 -11.3470 3.0188 23 1 5.9491 -10.7514 0.9475 24 1 6.2262 -9.3610 2.9151 25 6 3.1381 -5.7991 0.1613 26 1 -0.3634 0.0024 1.0276 27 1 -0.3633 0.8888 -0.5160 28 1 -0.3633 -0.8912 -0.5118 29 1 4.4498 1.4059 -0.0115 30 1 4.5890 -1.2109 -0.0090 31 1 4.6543 -3.1089 0.5923 32 1 3.7645 -2.0551 1.7174 33 1 4.0555 -3.7602 2.1367 34 1 2.8054 -4.8566 2.8329 35 1 1.0270 -5.0290 2.6562 36 1 1.2107 -7.2761 1.8092 37 1 2.5265 -7.2499 3.0230 38 1 1.8266 -8.9872 1.8592 39 1 4.1242 -5.3349 0.1549 40 1 2.8487 -6.0736 -0.8531 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032984427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:31 Heat of formation + Delta-G solvation = 45.475822 kcal Electronic energy + Delta-G solvation = -21793.593047 eV Core-core repulsion = 18610.239436 eV Total energy + Delta-G solvation = -3183.353611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.39788 -39.35596 -37.29236 -34.82898 -32.38822 -31.71647 -31.00276 -29.11772 -27.65064 -26.94521 -25.98064 -24.29467 -22.56078 -20.93221 -20.15413 -19.67413 -18.39565 -17.74608 -17.53993 -16.42212 -15.63359 -15.10339 -14.59132 -14.21458 -14.14895 -13.86825 -13.67976 -13.23629 -13.09465 -12.93552 -12.76964 -12.72665 -12.60966 -12.21790 -11.83016 -11.65945 -11.55656 -10.96387 -10.72391 -10.66184 -10.36701 -10.00430 -9.95881 -9.63012 -9.57363 -8.89228 -8.38649 -8.22778 -8.15204 -6.90850 -6.15422 -2.98361 1.78903 2.33165 2.94125 3.34850 3.51216 3.53403 3.58079 3.75773 4.62687 4.68414 4.77058 4.99848 5.05611 5.29878 5.33348 5.35720 5.39627 5.43135 5.47584 5.62896 5.72520 5.76466 5.78385 5.80590 5.95690 6.03502 6.09637 6.21858 6.42705 6.60082 6.62911 6.69984 6.78568 6.98564 7.04644 7.06765 7.27610 7.74734 7.82987 8.51178 8.54890 9.05663 9.89983 10.44245 11.25962 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037781 B = 0.003888 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.933820 B = 7200.321189 C = 7615.858175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.093 3.907 3 N -0.555 5.555 4 H 0.414 0.586 5 C -0.022 4.022 6 C -0.166 4.166 7 C -0.224 4.224 8 C 0.590 3.410 9 O -0.553 6.553 10 N -0.595 5.595 11 C 0.077 3.923 12 C 0.129 3.871 13 H 0.104 0.896 14 C -0.144 4.144 15 C 0.144 3.856 16 N -0.603 5.603 17 C -0.347 4.347 18 H 0.070 0.930 19 C -0.026 4.026 20 N -0.914 5.914 21 Si 1.067 2.933 22 H -0.286 1.286 23 H -0.294 1.294 24 H -0.295 1.295 25 C 0.132 3.868 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.168 0.832 30 H 0.149 0.851 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.057 0.943 38 H 0.270 0.730 39 H 0.031 0.969 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 23.647 -0.664 23.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.024 4.024 3 N -0.151 5.151 4 H 0.250 0.750 5 C -0.149 4.149 6 C -0.191 4.191 7 C -0.234 4.234 8 C 0.380 3.620 9 O -0.432 6.432 10 N -0.326 5.326 11 C -0.066 4.066 12 C 0.025 3.975 13 H 0.122 0.878 14 C -0.184 4.184 15 C 0.018 3.982 16 N -0.331 5.331 17 C -0.474 4.474 18 H 0.088 0.912 19 C -0.227 4.227 20 N -0.556 5.556 21 Si 0.897 3.103 22 H -0.212 1.212 23 H -0.221 1.221 24 H -0.222 1.222 25 C 0.006 3.994 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.120 0.880 29 H 0.185 0.815 30 H 0.166 0.834 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.048 0.952 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.325 22.122 -0.184 22.125 hybrid contribution -0.313 1.848 -0.919 2.088 sum 0.012 23.970 -1.103 23.995 Atomic orbital electron populations 1.20568 0.87309 1.04561 1.03170 1.20225 0.93533 0.85622 1.03032 1.41544 1.06243 1.08227 1.59045 0.75018 1.21716 0.85606 0.96439 1.11149 1.22241 0.95960 0.93448 1.07424 1.20137 0.93453 0.92071 1.17742 1.17432 0.82571 0.84116 0.77920 1.90721 1.26728 1.81533 1.44233 1.47603 1.23058 1.09190 1.52760 1.21962 0.85284 1.01345 0.97963 1.22167 0.98921 0.79258 0.97136 0.87789 1.23241 1.01137 0.98558 0.95422 1.21580 0.92669 0.90681 0.93230 1.44568 1.44657 1.15938 1.27920 1.19704 1.12531 0.95005 1.20204 0.91200 1.25688 1.01790 0.96503 0.98754 1.70851 0.98242 1.34856 1.51635 0.83444 0.74848 0.75521 0.76448 1.21210 1.22072 1.22236 1.21504 0.95952 0.88048 0.93934 0.90757 0.91649 0.88021 0.81457 0.83361 0.92798 0.90703 0.90621 0.91128 0.91606 0.95743 0.92476 0.91800 0.95154 0.95773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 10.21 36.01 0.37 -0.59 16 2 C 0.09 1.04 7.17 -81.88 -0.59 0.46 16 3 N -0.55 -4.43 5.90 -9.11 -0.05 -4.48 16 4 H 0.41 1.84 8.96 -40.82 -0.37 1.47 16 5 C -0.02 -0.18 11.89 -16.82 -0.20 -0.38 16 6 C -0.17 -1.83 8.75 -37.50 -0.33 -2.16 16 7 C -0.22 -3.08 5.52 -103.35 -0.57 -3.65 16 8 C 0.59 10.08 7.49 -12.60 -0.09 9.99 16 9 O -0.55 -11.04 14.81 5.25 0.08 -10.96 16 10 N -0.60 -9.92 2.88 -173.16 -0.50 -10.42 16 11 C 0.08 1.04 7.76 59.85 0.46 1.51 16 12 C 0.13 2.50 3.35 -66.09 -0.22 2.28 16 13 H 0.10 2.17 7.01 -51.93 -0.36 1.81 16 14 C -0.14 -2.74 6.60 -24.46 -0.16 -2.90 16 15 C 0.14 3.45 5.17 -2.41 -0.01 3.44 16 16 N -0.60 -15.86 3.37 -169.93 -0.57 -16.43 16 17 C -0.35 -10.10 10.01 -15.06 -0.15 -10.26 16 18 H 0.07 2.03 8.02 -52.49 -0.42 1.61 16 19 C -0.03 -0.74 4.96 -17.43 -0.09 -0.83 16 20 N -0.91 -28.15 12.95 55.49 0.72 -27.43 16 21 Si 1.07 25.80 30.04 -169.99 -5.11 20.69 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.13 2.98 6.88 -3.06 -0.02 2.95 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.10 1.26 6.53 -51.93 -0.34 0.92 16 29 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.15 1.47 6.34 -52.48 -0.33 1.14 16 31 H 0.05 0.68 7.25 -51.93 -0.38 0.30 16 32 H 0.07 0.87 5.85 -51.93 -0.30 0.56 16 33 H 0.08 1.07 6.13 -51.93 -0.32 0.75 16 34 H 0.07 1.26 6.14 -51.93 -0.32 0.94 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.02 0.62 7.08 -51.93 -0.37 0.26 16 37 H 0.06 1.47 7.47 -51.93 -0.39 1.09 16 38 H 0.27 8.29 5.74 -40.82 -0.23 8.06 16 39 H 0.03 0.66 7.07 -51.93 -0.37 0.30 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 317.26 15.07 4.78 4.78 Total: -1.00 -35.44 317.26 -7.66 -43.11 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.41 Total: 1.29 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -1.60 Total: -0.14 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: -0.41 Total: -58.76 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.96 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.11 Total: 20.69 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.44 -7.66 -43.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032984427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.581 kcal (2) G-P(sol) polarization free energy of solvation -35.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds