Wall clock time and date at job start Mon Mar 30 2020 01:42:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34659 * 125.80134 * 2 1 4 4 H 0.96993 * 124.85381 * 0.02562 * 3 2 1 5 5 C 1.36446 * 110.29670 * 180.29529 * 3 2 1 6 6 C 1.34487 * 108.85689 * 359.74433 * 5 3 2 7 7 C 1.36772 * 125.80126 * 179.86849 * 2 1 3 8 8 C 1.47264 * 126.94231 * 359.97438 * 7 2 1 9 9 O 1.21628 * 119.99410 * 34.86383 * 8 7 2 10 10 N 1.34768 * 120.00252 * 214.85399 * 8 7 2 11 11 C 1.46503 * 120.00253 * 355.79779 * 10 8 7 12 12 C 1.46505 * 119.99865 * 175.79655 * 10 8 7 13 13 H 1.08995 * 110.78164 * 358.21243 * 12 10 8 14 14 C 1.55158 * 110.71586 * 234.97632 * 12 10 8 15 15 C 1.55136 * 101.48273 * 205.96831 * 14 12 10 16 16 N 1.47419 * 104.72289 * 37.30108 * 15 14 12 17 17 C 1.36930 * 125.65318 * 155.81841 * 16 15 14 18 18 H 1.07997 * 120.00329 * 185.30885 * 17 16 15 19 19 C 1.38815 * 119.99460 * 5.30183 * 17 16 15 20 20 N 1.31616 * 120.00029 * 34.93849 * 19 17 16 21 21 Si 1.86801 * 120.00065 * 214.92970 * 19 17 16 22 22 H 1.48497 * 109.47066 * 180.02562 * 21 19 17 23 23 H 1.48506 * 109.47250 * 300.00602 * 21 19 17 24 24 H 1.48505 * 109.46861 * 60.00446 * 21 19 17 25 25 C 1.47029 * 108.70220 * 335.55022 * 16 15 14 26 26 H 1.08999 * 109.47350 * 270.13333 * 1 2 3 27 27 H 1.09003 * 109.46987 * 30.13981 * 1 2 3 28 28 H 1.09004 * 109.46778 * 150.13033 * 1 2 3 29 29 H 1.07998 * 125.57641 * 179.77302 * 5 3 2 30 30 H 1.08004 * 126.83234 * 180.02562 * 6 5 3 31 31 H 1.08993 * 109.46853 * 275.56998 * 11 10 8 32 32 H 1.09003 * 109.46811 * 35.57079 * 11 10 8 33 33 H 1.08995 * 109.47098 * 155.56625 * 11 10 8 34 34 H 1.08996 * 111.00836 * 324.20749 * 14 12 10 35 35 H 1.09002 * 111.00314 * 88.03008 * 14 12 10 36 36 H 1.08996 * 110.49704 * 278.45560 * 15 14 12 37 37 H 1.09006 * 110.33948 * 156.06055 * 15 14 12 38 38 H 0.96997 * 120.00090 * 355.38158 * 20 19 17 39 39 H 1.08996 * 109.88455 * 120.70694 * 25 16 15 40 40 H 1.09004 * 109.88170 * 241.87533 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2947 1.0922 0.0000 4 1 1.9734 2.0073 0.0004 5 6 3.6095 0.7274 -0.0066 6 6 3.6882 -0.6151 -0.0053 7 6 2.3071 -1.1093 0.0025 8 6 1.8702 -2.5156 0.0063 9 8 0.8642 -2.8414 -0.5947 10 7 2.5852 -3.4416 0.6754 11 6 3.8456 -3.0675 1.3218 12 6 2.1020 -4.8223 0.7563 13 1 1.1408 -4.9258 0.2530 14 6 1.9998 -5.2822 2.2347 15 6 2.1589 -6.8188 2.0917 16 7 3.1534 -6.9942 1.0177 17 6 3.9544 -8.0909 0.8429 18 1 4.7131 -8.0885 0.0744 19 6 3.7912 -9.2057 1.6537 20 7 2.5895 -9.5495 2.0658 21 14 5.2773 -10.2181 2.1598 22 1 4.8379 -11.3470 3.0188 23 1 5.9491 -10.7514 0.9475 24 1 6.2262 -9.3610 2.9151 25 6 3.1381 -5.7991 0.1613 26 1 -0.3634 0.0024 1.0276 27 1 -0.3633 0.8888 -0.5160 28 1 -0.3633 -0.8912 -0.5118 29 1 4.4498 1.4059 -0.0115 30 1 4.5890 -1.2109 -0.0090 31 1 4.6543 -3.1089 0.5923 32 1 3.7645 -2.0551 1.7174 33 1 4.0555 -3.7602 2.1367 34 1 2.8054 -4.8566 2.8329 35 1 1.0270 -5.0290 2.6562 36 1 1.2107 -7.2761 1.8092 37 1 2.5265 -7.2499 3.0230 38 1 1.8266 -8.9872 1.8592 39 1 4.1242 -5.3349 0.1549 40 1 2.8487 -6.0736 -0.8531 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032984427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:31 Heat of formation + Delta-G solvation = 21.350751 kcal Electronic energy + Delta-G solvation = -21794.639189 eV Core-core repulsion = 18610.239436 eV Total energy + Delta-G solvation = -3184.399752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.23045 -40.72554 -38.96937 -36.39372 -34.26890 -32.48418 -32.06573 -30.98752 -29.29102 -28.02281 -27.06909 -26.26418 -23.80351 -22.16691 -21.66484 -21.11602 -19.68046 -19.57081 -18.57422 -17.73970 -16.91819 -16.27817 -16.09126 -15.92307 -15.47330 -15.31153 -15.05252 -14.74018 -14.41611 -14.20297 -13.96826 -13.79657 -13.55155 -13.47769 -13.44887 -12.84194 -12.63798 -12.54280 -12.50031 -12.42710 -12.41746 -11.87495 -11.70192 -11.69819 -10.92541 -10.39338 -9.74534 -9.63107 -9.07627 -9.06196 -8.47474 -5.26599 0.81620 1.57738 1.58389 1.67067 1.86511 1.90962 2.34123 2.45026 2.63479 3.15178 3.48964 3.63950 3.78531 3.93717 3.95107 4.13031 4.25017 4.30951 4.34378 4.36714 4.46191 4.61206 4.67992 4.72500 4.74704 4.85427 4.92484 4.97180 5.01542 5.02811 5.08060 5.19741 5.26376 5.53896 5.64153 5.81767 6.02569 6.28477 6.47090 6.72226 6.83447 7.22642 7.70240 8.26507 8.94906 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.037781 B = 0.003888 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.933820 B = 7200.321189 C = 7615.858175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.093 3.907 3 N -0.537 5.537 4 H 0.434 0.566 5 C 0.003 3.997 6 C -0.190 4.190 7 C -0.264 4.264 8 C 0.584 3.416 9 O -0.594 6.594 10 N -0.596 5.596 11 C 0.078 3.922 12 C 0.143 3.857 13 H 0.084 0.916 14 C -0.123 4.123 15 C 0.148 3.852 16 N -0.623 5.623 17 C -0.363 4.363 18 H 0.064 0.936 19 C -0.075 4.075 20 N -0.941 5.941 21 Si 1.123 2.877 22 H -0.291 1.291 23 H -0.276 1.276 24 H -0.277 1.277 25 C 0.134 3.866 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.210 0.790 30 H 0.154 0.846 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.003 0.997 37 H 0.034 0.966 38 H 0.256 0.744 39 H 0.042 0.958 40 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.071 26.815 -0.007 26.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.026 4.026 3 N -0.134 5.134 4 H 0.274 0.726 5 C -0.125 4.125 6 C -0.213 4.213 7 C -0.274 4.274 8 C 0.376 3.624 9 O -0.477 6.477 10 N -0.326 5.326 11 C -0.064 4.064 12 C 0.038 3.962 13 H 0.102 0.898 14 C -0.162 4.162 15 C 0.022 3.978 16 N -0.351 5.351 17 C -0.490 4.490 18 H 0.082 0.918 19 C -0.271 4.271 20 N -0.584 5.584 21 Si 0.946 3.054 22 H -0.217 1.217 23 H -0.202 1.202 24 H -0.203 1.203 25 C 0.008 3.992 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.227 0.773 30 H 0.172 0.828 31 H 0.081 0.919 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.021 0.979 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 2.113 25.368 0.463 25.460 hybrid contribution -0.891 0.959 -1.207 1.781 sum 1.223 26.327 -0.744 26.366 Atomic orbital electron populations 1.20544 0.86760 1.04422 1.03738 1.20337 0.94135 0.86022 1.02133 1.41553 1.05964 1.08544 1.57293 0.72617 1.22311 0.86416 0.96043 1.07739 1.22379 0.94859 0.94823 1.09255 1.20051 0.95662 0.90511 1.21200 1.18048 0.81847 0.85557 0.76910 1.90691 1.28616 1.82417 1.45954 1.47625 1.24183 1.07692 1.53120 1.22136 0.83918 1.02486 0.97810 1.21722 0.97064 0.80637 0.96743 0.89785 1.23091 1.03075 0.94514 0.95492 1.21494 0.90900 0.93951 0.91479 1.44834 1.44769 1.16237 1.29227 1.19977 1.12647 0.96097 1.20294 0.91791 1.27205 1.03421 0.98138 0.98373 1.70974 0.98745 1.35420 1.53251 0.82748 0.71708 0.74224 0.76707 1.21668 1.20152 1.20277 1.21560 0.97430 0.87698 0.92533 0.89829 0.88619 0.91268 0.77333 0.82800 0.91865 0.88247 0.91137 0.89252 0.89441 0.97936 0.94743 0.93245 0.93979 0.97929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 10.21 71.24 0.73 -1.02 16 2 C 0.09 1.88 7.17 41.78 0.30 2.18 16 3 N -0.54 -6.41 5.90 -182.72 -1.08 -7.49 16 4 H 0.43 1.82 8.96 -92.71 -0.83 0.99 16 5 C 0.00 0.03 11.89 83.12 0.99 1.02 16 6 C -0.19 -3.63 8.75 23.62 0.21 -3.42 16 7 C -0.26 -6.91 5.52 -19.04 -0.11 -7.01 16 8 C 0.58 20.09 7.49 86.62 0.65 20.74 16 9 O -0.59 -24.69 14.81 -4.12 -0.06 -24.75 16 10 N -0.60 -19.70 2.88 -820.01 -2.36 -22.06 16 11 C 0.08 1.98 7.76 127.77 0.99 2.97 16 12 C 0.14 5.67 3.35 46.18 0.15 5.82 16 13 H 0.08 3.68 7.01 -2.39 -0.02 3.66 16 14 C -0.12 -4.65 6.60 32.07 0.21 -4.44 16 15 C 0.15 7.30 5.17 86.94 0.45 7.75 16 16 N -0.62 -33.72 3.37 -691.53 -2.33 -36.05 16 17 C -0.36 -21.54 10.01 84.04 0.84 -20.70 16 18 H 0.06 3.79 8.02 -2.91 -0.02 3.76 16 19 C -0.08 -4.45 4.96 84.86 0.42 -4.03 16 20 N -0.94 -59.55 12.95 21.65 0.28 -59.27 16 21 Si 1.12 52.15 30.04 68.60 2.06 54.21 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 23 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 25 C 0.13 6.19 6.88 86.73 0.60 6.79 16 26 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.75 6.53 -2.38 -0.02 1.73 16 29 H 0.21 0.76 8.06 -2.91 -0.02 0.74 16 30 H 0.15 2.65 6.34 -2.91 -0.02 2.63 16 31 H 0.06 1.48 7.25 -2.39 -0.02 1.46 16 32 H 0.10 2.05 5.85 -2.39 -0.01 2.04 16 33 H 0.07 1.86 6.13 -2.39 -0.01 1.84 16 34 H 0.09 3.07 6.14 -2.39 -0.01 3.05 16 35 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 36 H 0.00 0.16 7.08 -2.39 -0.02 0.14 16 37 H 0.03 1.84 7.47 -2.38 -0.02 1.82 16 38 H 0.26 16.48 5.74 -92.71 -0.53 15.95 16 39 H 0.04 1.85 7.07 -2.39 -0.02 1.83 16 40 H 0.00 0.13 8.14 -2.38 -0.02 0.12 16 Total: -1.00 -80.51 317.26 3.41 -77.11 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.47 Total: 11.65 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 6.43 Total: 6.65 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -5.49 Total: -124.87 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.06 Total: -24.75 kcal Atomic # 14 Polarization: 52.15 SS G_CDS: 2.06 Total: 54.21 kcal Total: -80.51 3.41 -77.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032984427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.458 kcal (2) G-P(sol) polarization free energy of solvation -80.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds