Wall clock time and date at job start Mon Mar 30 2020 01:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34659 * 125.80634 * 2 1 4 4 H 0.96994 * 124.84762 * 0.02756 * 3 2 1 5 5 C 1.36448 * 110.29672 * 180.29656 * 3 2 1 6 6 C 1.34480 * 108.86145 * 359.75198 * 5 3 2 7 7 C 1.36773 * 125.79915 * 179.87325 * 2 1 3 8 8 C 1.47266 * 126.94416 * 359.97438 * 7 2 1 9 9 O 1.21625 * 119.99863 * 7.31888 * 8 7 2 10 10 N 1.34778 * 120.00185 * 187.31681 * 8 7 2 11 11 C 1.46501 * 119.99983 * 6.35103 * 10 8 7 12 12 C 1.46499 * 120.00045 * 186.34526 * 10 8 7 13 13 H 1.09001 * 110.88162 * 356.12108 * 12 10 8 14 14 C 1.55157 * 111.00332 * 119.99996 * 12 10 8 15 15 C 1.54321 * 102.94175 * 82.61135 * 14 12 10 16 16 N 1.47026 * 107.27061 * 22.19221 * 15 14 12 17 17 C 1.36942 * 125.64731 * 181.02475 * 16 15 14 18 18 H 1.08001 * 119.99508 * 175.09703 * 17 16 15 19 19 C 1.38809 * 119.99991 * 355.09409 * 17 16 15 20 20 N 1.31620 * 119.99700 * 156.01702 * 19 17 16 21 21 Si 1.86798 * 119.99962 * 335.74442 * 19 17 16 22 22 H 1.48509 * 109.47135 * 185.81030 * 21 19 17 23 23 H 1.48504 * 109.47248 * 305.80511 * 21 19 17 24 24 H 1.48495 * 109.47594 * 65.80951 * 21 19 17 25 25 C 1.47422 * 108.70253 * 1.28605 * 16 15 14 26 26 H 1.08999 * 109.47081 * 270.12891 * 1 2 3 27 27 H 1.08997 * 109.46792 * 30.12740 * 1 2 3 28 28 H 1.09001 * 109.47467 * 150.13288 * 1 2 3 29 29 H 1.08004 * 125.56239 * 179.77227 * 5 3 2 30 30 H 1.07993 * 126.83750 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.46726 * 275.69940 * 11 10 8 32 32 H 1.08996 * 109.47071 * 35.69125 * 11 10 8 33 33 H 1.08990 * 109.47386 * 155.69767 * 11 10 8 34 34 H 1.09003 * 110.71962 * 324.24815 * 14 12 10 35 35 H 1.08996 * 110.86813 * 201.04516 * 14 12 10 36 36 H 1.09003 * 109.88713 * 262.77940 * 15 14 12 37 37 H 1.09001 * 110.01337 * 141.68264 * 15 14 12 38 38 H 0.96997 * 120.00221 * 354.71988 * 20 19 17 39 39 H 1.08998 * 110.36393 * 94.48241 * 25 16 15 40 40 H 1.08996 * 110.36549 * 216.80370 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0073 0.0004 5 6 3.6096 0.7272 -0.0066 6 6 3.6882 -0.6153 -0.0055 7 6 2.3070 -1.1093 0.0025 8 6 1.8702 -2.5157 0.0061 9 8 0.6920 -2.7868 -0.1270 10 7 2.7759 -3.5023 0.1569 11 6 4.1723 -3.1754 0.4558 12 6 2.3639 -4.9017 0.0219 13 1 1.2874 -4.9767 -0.1318 14 6 3.1396 -5.6016 -1.1252 15 6 4.4696 -5.9988 -0.4510 16 7 4.2257 -6.0520 0.9979 17 6 5.1599 -6.3490 1.9541 18 1 4.9006 -6.2851 3.0006 19 6 6.4400 -6.7324 1.5784 20 7 7.4473 -6.5656 2.4090 21 14 6.7318 -7.4918 -0.1031 22 1 8.1442 -7.9392 -0.2059 23 1 5.8292 -8.6572 -0.2833 24 1 6.4543 -6.4831 -1.1569 25 6 2.8075 -5.7387 1.2503 26 1 -0.3633 0.0023 1.0277 27 1 -0.3633 0.8888 -0.5158 28 1 -0.3634 -0.8912 -0.5118 29 1 4.4498 1.4059 -0.0116 30 1 4.5889 -1.2111 -0.0093 31 1 4.7014 -2.9589 -0.4722 32 1 4.2096 -2.3024 1.1074 33 1 4.6448 -4.0215 0.9546 34 1 3.3163 -4.9102 -1.9492 35 1 2.6045 -6.4852 -1.4731 36 1 5.2340 -5.2535 -0.6711 37 1 4.7918 -6.9768 -0.8088 38 1 7.3099 -6.1058 3.2519 39 1 2.2227 -6.6560 1.3184 40 1 2.7051 -5.1538 2.1644 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032984432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:34 Heat of formation + Delta-G solvation = 68.505684 kcal Electronic energy + Delta-G solvation = -22378.549380 eV Core-core repulsion = 19196.194419 eV Total energy + Delta-G solvation = -3182.354961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.29124 -39.42204 -37.45083 -34.38645 -32.49369 -31.54256 -31.01507 -29.49501 -28.34234 -26.81036 -25.79446 -23.87612 -22.57961 -20.84061 -20.68646 -19.71019 -18.25136 -17.55232 -17.43912 -16.21895 -15.59240 -15.23821 -14.90473 -14.42298 -14.29248 -13.77297 -13.55154 -13.25671 -12.94047 -12.81094 -12.75033 -12.63301 -12.43635 -12.06208 -11.61946 -11.58986 -11.33858 -11.19181 -10.91949 -10.70602 -10.57617 -10.06643 -9.51657 -9.34749 -8.97421 -8.78291 -8.58910 -8.29001 -8.00178 -7.02149 -6.32880 -3.18760 1.83715 2.46183 3.08022 3.44097 3.54754 3.56132 3.73799 3.77866 4.64613 4.80077 4.91381 5.01319 5.13759 5.18344 5.29207 5.36146 5.48000 5.51539 5.57961 5.66408 5.81583 5.89002 5.92288 5.96345 6.06339 6.11307 6.21911 6.32809 6.38024 6.51586 6.59580 6.73784 6.77309 6.85274 6.91092 7.16785 7.39880 7.66785 7.94656 8.33863 8.65506 9.03608 9.56619 10.23127 11.16569 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026321 B = 0.005210 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.525148 B = 5373.006508 C = 5871.547819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.098 3.902 3 N -0.555 5.555 4 H 0.412 0.588 5 C -0.027 4.027 6 C -0.173 4.173 7 C -0.227 4.227 8 C 0.588 3.412 9 O -0.565 6.565 10 N -0.585 5.585 11 C 0.049 3.951 12 C 0.126 3.874 13 H 0.105 0.895 14 C -0.141 4.141 15 C 0.115 3.885 16 N -0.608 5.608 17 C -0.328 4.328 18 H 0.080 0.920 19 C -0.015 4.015 20 N -0.919 5.919 21 Si 1.051 2.949 22 H -0.302 1.302 23 H -0.298 1.298 24 H -0.282 1.282 25 C 0.125 3.875 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.168 0.832 30 H 0.162 0.838 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.121 0.879 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.047 0.953 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.034 0.966 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.160 15.261 -6.799 19.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.020 4.020 3 N -0.151 5.151 4 H 0.248 0.752 5 C -0.154 4.154 6 C -0.197 4.197 7 C -0.237 4.237 8 C 0.379 3.621 9 O -0.447 6.447 10 N -0.315 5.315 11 C -0.093 4.093 12 C 0.022 3.978 13 H 0.123 0.877 14 C -0.180 4.180 15 C -0.009 4.009 16 N -0.336 5.336 17 C -0.455 4.455 18 H 0.098 0.902 19 C -0.215 4.215 20 N -0.560 5.560 21 Si 0.884 3.116 22 H -0.230 1.230 23 H -0.227 1.227 24 H -0.209 1.209 25 C -0.002 4.002 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.122 0.878 29 H 0.185 0.815 30 H 0.179 0.821 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.139 0.861 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.521 14.511 -7.727 18.998 hybrid contribution -1.043 1.031 0.973 1.760 sum -10.564 15.542 -6.753 19.969 Atomic orbital electron populations 1.20567 0.87197 1.04154 1.03256 1.20300 0.93588 0.85684 1.02435 1.41587 1.06347 1.08173 1.59021 0.75164 1.21805 0.85493 0.96651 1.11418 1.22894 0.96836 0.93545 1.06400 1.20165 0.93281 0.92125 1.18153 1.17416 0.84857 0.84144 0.75687 1.90657 1.16997 1.84253 1.52798 1.47400 1.09729 1.05197 1.69154 1.22755 0.81379 1.04844 1.00332 1.22216 0.99344 0.80115 0.96163 0.87712 1.22971 0.97337 1.00083 0.97595 1.21988 0.95467 0.98131 0.85321 1.45058 1.05179 1.82201 1.01190 1.20099 0.91060 1.46304 0.88014 0.90249 1.25692 0.90571 1.00012 1.05226 1.70905 1.30397 1.42951 1.11718 0.84169 0.74146 0.76961 0.76294 1.22975 1.22673 1.20876 1.21966 0.86676 0.95846 0.95676 0.90734 0.92139 0.87810 0.81514 0.82056 0.93563 0.91113 0.86079 0.91120 0.90554 0.93544 0.95738 0.92738 0.94806 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.96 36.00 0.36 -0.64 16 2 C 0.10 1.22 7.17 -81.88 -0.59 0.64 16 3 N -0.56 -5.27 5.90 -9.11 -0.05 -5.32 16 4 H 0.41 2.38 8.96 -40.82 -0.37 2.01 16 5 C -0.03 -0.28 11.89 -16.83 -0.20 -0.48 16 6 C -0.17 -2.29 8.84 -37.50 -0.33 -2.63 16 7 C -0.23 -3.48 6.04 -103.35 -0.62 -4.11 16 8 C 0.59 10.51 7.65 -12.59 -0.10 10.41 16 9 O -0.57 -10.99 14.19 5.26 0.07 -10.91 16 10 N -0.58 -10.49 2.91 -172.68 -0.50 -10.99 16 11 C 0.05 0.87 7.01 59.85 0.42 1.28 16 12 C 0.13 2.30 3.66 -65.67 -0.24 2.05 16 13 H 0.10 1.86 7.02 -51.93 -0.36 1.50 16 14 C -0.14 -2.48 6.48 -24.90 -0.16 -2.64 16 15 C 0.12 2.47 3.52 -3.06 -0.01 2.46 16 16 N -0.61 -14.37 1.81 -169.94 -0.31 -14.68 16 17 C -0.33 -9.06 10.02 -15.06 -0.15 -9.21 16 18 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 19 C -0.01 -0.42 5.47 -17.43 -0.10 -0.51 16 20 N -0.92 -28.08 13.70 55.49 0.76 -27.32 16 21 Si 1.05 26.08 24.75 -169.99 -4.21 21.87 16 22 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 23 H -0.30 -7.31 7.10 56.52 0.40 -6.91 16 24 H -0.28 -6.34 5.21 56.52 0.29 -6.04 16 25 C 0.13 2.56 6.47 -2.41 -0.02 2.54 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.10 1.34 6.35 -51.93 -0.33 1.01 16 29 H 0.17 1.16 8.06 -52.48 -0.42 0.74 16 30 H 0.16 2.09 4.82 -52.49 -0.25 1.84 16 31 H 0.05 0.75 7.30 -51.93 -0.38 0.37 16 32 H 0.07 1.14 5.37 -51.93 -0.28 0.87 16 33 H 0.12 2.56 4.38 -51.93 -0.23 2.34 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 1.03 5.95 -51.93 -0.31 0.72 16 37 H 0.03 0.56 4.24 -51.93 -0.22 0.34 16 38 H 0.26 7.94 8.73 -40.82 -0.36 7.58 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 304.94 15.07 4.60 4.60 Total: -1.00 -33.07 304.94 -6.75 -39.82 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.37 Total: 3.76 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.74 Total: -0.82 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.10 Total: -58.32 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.07 Total: -10.91 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -4.21 Total: 21.87 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.07 -6.75 -39.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032984432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.325 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds