Wall clock time and date at job start Mon Mar 30 2020 01:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34659 * 125.80634 * 2 1 4 4 H 0.96994 * 124.84762 * 0.02756 * 3 2 1 5 5 C 1.36448 * 110.29672 * 180.29656 * 3 2 1 6 6 C 1.34480 * 108.86145 * 359.75198 * 5 3 2 7 7 C 1.36773 * 125.79915 * 179.87325 * 2 1 3 8 8 C 1.47266 * 126.94416 * 359.97438 * 7 2 1 9 9 O 1.21625 * 119.99863 * 7.31888 * 8 7 2 10 10 N 1.34778 * 120.00185 * 187.31681 * 8 7 2 11 11 C 1.46501 * 119.99983 * 6.35103 * 10 8 7 12 12 C 1.46499 * 120.00045 * 186.34526 * 10 8 7 13 13 H 1.09001 * 110.88162 * 356.12108 * 12 10 8 14 14 C 1.55157 * 111.00332 * 119.99996 * 12 10 8 15 15 C 1.54321 * 102.94175 * 82.61135 * 14 12 10 16 16 N 1.47026 * 107.27061 * 22.19221 * 15 14 12 17 17 C 1.36942 * 125.64731 * 181.02475 * 16 15 14 18 18 H 1.08001 * 119.99508 * 175.09703 * 17 16 15 19 19 C 1.38809 * 119.99991 * 355.09409 * 17 16 15 20 20 N 1.31620 * 119.99700 * 156.01702 * 19 17 16 21 21 Si 1.86798 * 119.99962 * 335.74442 * 19 17 16 22 22 H 1.48509 * 109.47135 * 185.81030 * 21 19 17 23 23 H 1.48504 * 109.47248 * 305.80511 * 21 19 17 24 24 H 1.48495 * 109.47594 * 65.80951 * 21 19 17 25 25 C 1.47422 * 108.70253 * 1.28605 * 16 15 14 26 26 H 1.08999 * 109.47081 * 270.12891 * 1 2 3 27 27 H 1.08997 * 109.46792 * 30.12740 * 1 2 3 28 28 H 1.09001 * 109.47467 * 150.13288 * 1 2 3 29 29 H 1.08004 * 125.56239 * 179.77227 * 5 3 2 30 30 H 1.07993 * 126.83750 * 180.02562 * 6 5 3 31 31 H 1.09000 * 109.46726 * 275.69940 * 11 10 8 32 32 H 1.08996 * 109.47071 * 35.69125 * 11 10 8 33 33 H 1.08990 * 109.47386 * 155.69767 * 11 10 8 34 34 H 1.09003 * 110.71962 * 324.24815 * 14 12 10 35 35 H 1.08996 * 110.86813 * 201.04516 * 14 12 10 36 36 H 1.09003 * 109.88713 * 262.77940 * 15 14 12 37 37 H 1.09001 * 110.01337 * 141.68264 * 15 14 12 38 38 H 0.96997 * 120.00221 * 354.71988 * 20 19 17 39 39 H 1.08998 * 110.36393 * 94.48241 * 25 16 15 40 40 H 1.08996 * 110.36549 * 216.80370 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2948 1.0921 0.0000 4 1 1.9735 2.0073 0.0004 5 6 3.6096 0.7272 -0.0066 6 6 3.6882 -0.6153 -0.0055 7 6 2.3070 -1.1093 0.0025 8 6 1.8702 -2.5157 0.0061 9 8 0.6920 -2.7868 -0.1270 10 7 2.7759 -3.5023 0.1569 11 6 4.1723 -3.1754 0.4558 12 6 2.3639 -4.9017 0.0219 13 1 1.2874 -4.9767 -0.1318 14 6 3.1396 -5.6016 -1.1252 15 6 4.4696 -5.9988 -0.4510 16 7 4.2257 -6.0520 0.9979 17 6 5.1599 -6.3490 1.9541 18 1 4.9006 -6.2851 3.0006 19 6 6.4400 -6.7324 1.5784 20 7 7.4473 -6.5656 2.4090 21 14 6.7318 -7.4918 -0.1031 22 1 8.1442 -7.9392 -0.2059 23 1 5.8292 -8.6572 -0.2833 24 1 6.4543 -6.4831 -1.1569 25 6 2.8075 -5.7387 1.2503 26 1 -0.3633 0.0023 1.0277 27 1 -0.3633 0.8888 -0.5158 28 1 -0.3634 -0.8912 -0.5118 29 1 4.4498 1.4059 -0.0116 30 1 4.5889 -1.2111 -0.0093 31 1 4.7014 -2.9589 -0.4722 32 1 4.2096 -2.3024 1.1074 33 1 4.6448 -4.0215 0.9546 34 1 3.3163 -4.9102 -1.9492 35 1 2.6045 -6.4852 -1.4731 36 1 5.2340 -5.2535 -0.6711 37 1 4.7918 -6.9768 -0.8088 38 1 7.3099 -6.1058 3.2519 39 1 2.2227 -6.6560 1.3184 40 1 2.7051 -5.1538 2.1644 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032984432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:34 Heat of formation + Delta-G solvation = 46.022063 kcal Electronic energy + Delta-G solvation = -22379.524343 eV Core-core repulsion = 19196.194419 eV Total energy + Delta-G solvation = -3183.329924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.25748 -40.82573 -38.98342 -35.95243 -34.40490 -32.43606 -32.28400 -31.11395 -29.92991 -28.02361 -27.02425 -25.65326 -23.88667 -22.51856 -21.78828 -21.11282 -19.51740 -19.47133 -18.51015 -17.60779 -17.21232 -16.49211 -16.41239 -15.84888 -15.47010 -15.34090 -14.94374 -14.75211 -14.45904 -14.15624 -13.89044 -13.62413 -13.54674 -13.37277 -13.32292 -13.10263 -12.86073 -12.56815 -12.48649 -12.25852 -12.21655 -11.74646 -11.56201 -10.93104 -10.73368 -10.56259 -9.77300 -9.66774 -9.10202 -8.94376 -8.60665 -5.37681 0.75775 1.46552 1.55483 1.55694 1.76511 2.06234 2.44674 2.54765 2.59696 3.09631 3.33455 3.70442 3.79792 3.94757 4.00800 4.17132 4.32107 4.34696 4.41275 4.42224 4.57884 4.65475 4.70904 4.73816 4.75977 4.86750 4.93069 4.96974 4.99505 5.07289 5.15097 5.26668 5.32473 5.57610 5.69999 5.80984 6.02640 6.13451 6.56844 6.71195 6.85774 7.31266 7.47435 8.13622 8.90884 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026321 B = 0.005210 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.525148 B = 5373.006508 C = 5871.547819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.102 3.898 3 N -0.536 5.536 4 H 0.434 0.566 5 C -0.004 4.004 6 C -0.203 4.203 7 C -0.271 4.271 8 C 0.582 3.418 9 O -0.589 6.589 10 N -0.591 5.591 11 C 0.063 3.937 12 C 0.134 3.866 13 H 0.113 0.887 14 C -0.127 4.127 15 C 0.110 3.890 16 N -0.620 5.620 17 C -0.313 4.313 18 H 0.046 0.954 19 C -0.066 4.066 20 N -0.955 5.955 21 Si 1.090 2.910 22 H -0.314 1.314 23 H -0.291 1.291 24 H -0.243 1.243 25 C 0.125 3.875 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.206 0.794 30 H 0.157 0.843 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.040 0.960 37 H 0.024 0.976 38 H 0.249 0.751 39 H 0.044 0.956 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.243 17.424 -9.055 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.018 4.018 3 N -0.133 5.133 4 H 0.274 0.726 5 C -0.132 4.132 6 C -0.226 4.226 7 C -0.281 4.281 8 C 0.376 3.624 9 O -0.473 6.473 10 N -0.321 5.321 11 C -0.079 4.079 12 C 0.029 3.971 13 H 0.130 0.870 14 C -0.166 4.166 15 C -0.014 4.014 16 N -0.347 5.347 17 C -0.441 4.441 18 H 0.064 0.936 19 C -0.260 4.260 20 N -0.598 5.598 21 Si 0.918 3.082 22 H -0.243 1.243 23 H -0.218 1.218 24 H -0.168 1.168 25 C -0.001 4.001 26 H 0.097 0.903 27 H 0.113 0.887 28 H 0.097 0.903 29 H 0.223 0.777 30 H 0.175 0.825 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.058 0.942 37 H 0.041 0.959 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -10.651 16.726 -9.999 22.207 hybrid contribution -0.797 0.480 1.783 2.011 sum -11.448 17.206 -8.215 22.240 Atomic orbital electron populations 1.20554 0.86096 1.04586 1.03665 1.20499 0.94420 0.85850 1.01055 1.41586 1.05869 1.08670 1.57217 0.72620 1.22317 0.86532 0.96124 1.08181 1.22911 0.95910 0.95061 1.08739 1.20204 0.95058 0.91401 1.21422 1.17855 0.84438 0.85193 0.74951 1.90632 1.17787 1.84812 1.54020 1.47469 1.09866 1.05204 1.69532 1.22574 0.81148 1.03423 1.00776 1.22112 0.99779 0.80211 0.95026 0.86954 1.22943 0.95052 1.01306 0.97249 1.22093 0.97655 0.97746 0.83908 1.44979 1.05868 1.82026 1.01874 1.19907 0.92005 1.44548 0.87605 0.93610 1.26810 0.90556 1.00676 1.07961 1.71003 1.31520 1.45288 1.12040 0.83696 0.73367 0.77220 0.73914 1.24327 1.21849 1.16796 1.22045 0.85238 0.96448 0.96365 0.90275 0.88707 0.90326 0.77709 0.82547 0.92218 0.90185 0.89793 0.89351 0.88121 0.94190 0.95905 0.94188 0.93796 0.94885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.75 9.96 71.24 0.71 -1.04 16 2 C 0.10 2.31 7.17 41.78 0.30 2.61 16 3 N -0.54 -8.17 5.90 -182.72 -1.08 -9.25 16 4 H 0.43 3.02 8.96 -92.71 -0.83 2.19 16 5 C 0.00 -0.07 11.89 83.11 0.99 0.92 16 6 C -0.20 -5.00 8.84 23.62 0.21 -4.80 16 7 C -0.27 -7.96 6.04 -19.04 -0.12 -8.08 16 8 C 0.58 20.52 7.65 86.62 0.66 21.18 16 9 O -0.59 -22.71 14.19 -4.11 -0.06 -22.77 16 10 N -0.59 -20.86 2.91 -818.47 -2.39 -23.25 16 11 C 0.06 2.21 7.01 127.77 0.90 3.11 16 12 C 0.13 4.70 3.66 46.46 0.17 4.87 16 13 H 0.11 3.84 7.02 -2.39 -0.02 3.82 16 14 C -0.13 -4.12 6.48 31.78 0.21 -3.91 16 15 C 0.11 4.51 3.52 86.73 0.30 4.81 16 16 N -0.62 -29.33 1.81 -691.55 -1.25 -30.58 16 17 C -0.31 -17.76 10.02 84.03 0.84 -16.92 16 18 H 0.05 2.85 8.06 -2.91 -0.02 2.82 16 19 C -0.07 -3.83 5.47 84.86 0.46 -3.37 16 20 N -0.96 -60.35 13.70 21.65 0.30 -60.05 16 21 Si 1.09 52.49 24.75 68.60 1.70 54.19 16 22 H -0.31 -15.72 7.11 99.48 0.71 -15.02 16 23 H -0.29 -13.55 7.10 99.48 0.71 -12.84 16 24 H -0.24 -10.17 5.21 99.48 0.52 -9.65 16 25 C 0.13 5.12 6.47 86.93 0.56 5.69 16 26 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 1.96 6.35 -2.39 -0.02 1.94 16 29 H 0.21 1.83 8.06 -2.91 -0.02 1.81 16 30 H 0.16 3.88 4.82 -2.91 -0.01 3.86 16 31 H 0.06 1.88 7.30 -2.39 -0.02 1.87 16 32 H 0.08 2.61 5.37 -2.39 -0.01 2.59 16 33 H 0.08 3.60 4.38 -2.39 -0.01 3.59 16 34 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 36 H 0.04 1.70 5.95 -2.39 -0.01 1.68 16 37 H 0.02 0.98 4.24 -2.39 -0.01 0.97 16 38 H 0.25 15.84 8.73 -92.71 -0.81 15.03 16 39 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -74.34 304.94 3.44 -70.91 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.02 Total: 15.71 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 6.20 Total: 5.08 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -4.42 Total: -123.12 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.06 Total: -22.77 kcal Atomic # 14 Polarization: 52.49 SS G_CDS: 1.70 Total: 54.19 kcal Total: -74.34 3.44 -70.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032984432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.928 kcal (2) G-P(sol) polarization free energy of solvation -74.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds