Wall clock time and date at job start Mon Mar 30 2020 02:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39833 * 126.45660 * 2 1 4 4 C 1.35453 * 107.86277 * 180.26074 * 3 2 1 5 5 N 1.35537 * 108.87187 * 359.73492 * 4 3 2 6 6 H 0.97005 * 125.67951 * 179.97438 * 5 4 3 7 7 C 1.37647 * 108.64438 * 0.02562 * 5 4 3 8 8 C 1.46675 * 126.23285 * 179.97438 * 7 5 4 9 9 O 1.21700 * 120.00013 * 186.47168 * 8 7 5 10 10 N 1.34776 * 120.00419 * 6.47746 * 8 7 5 11 11 C 1.46499 * 119.99541 * 5.45964 * 10 8 7 12 12 C 1.46494 * 120.00109 * 185.46713 * 10 8 7 13 13 H 1.08994 * 110.78113 * 358.21135 * 12 10 8 14 14 C 1.55166 * 110.71703 * 234.97252 * 12 10 8 15 15 C 1.55132 * 101.48555 * 205.96882 * 14 12 10 16 16 N 1.47435 * 104.71989 * 37.29431 * 15 14 12 17 17 C 1.36936 * 125.64147 * 155.81333 * 16 15 14 18 18 H 1.08006 * 119.99400 * 189.89300 * 17 16 15 19 19 C 1.38810 * 120.00654 * 9.89788 * 17 16 15 20 20 N 1.31619 * 119.99480 * 10.51600 * 19 17 16 21 21 Si 1.86792 * 120.00196 * 190.52276 * 19 17 16 22 22 H 1.48506 * 109.47157 * 265.10530 * 21 19 17 23 23 H 1.48499 * 109.47430 * 25.10383 * 21 19 17 24 24 H 1.48501 * 109.47366 * 145.10856 * 21 19 17 25 25 C 1.47013 * 108.70476 * 335.55359 * 16 15 14 26 26 H 1.08998 * 109.47323 * 270.18381 * 1 2 3 27 27 H 1.08997 * 109.46432 * 30.18951 * 1 2 3 28 28 H 1.09001 * 109.46963 * 150.18505 * 1 2 3 29 29 H 1.07993 * 126.07166 * 0.02562 * 3 2 1 30 30 H 1.08004 * 125.56854 * 179.76115 * 4 3 2 31 31 H 1.08998 * 109.47813 * 276.11514 * 11 10 8 32 32 H 1.09003 * 109.47039 * 36.12126 * 11 10 8 33 33 H 1.09004 * 109.47008 * 156.11269 * 11 10 8 34 34 H 1.09000 * 111.00385 * 324.20914 * 14 12 10 35 35 H 1.08993 * 111.00447 * 88.02321 * 14 12 10 36 36 H 1.08997 * 110.49472 * 278.45670 * 15 14 12 37 37 H 1.08995 * 110.34123 * 156.05810 * 15 14 12 38 38 H 0.97002 * 119.99833 * 180.02562 * 20 19 17 39 39 H 1.09004 * 109.88526 * 120.70253 * 25 16 15 40 40 H 1.08995 * 109.88608 * 241.86961 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0059 5 7 3.6284 -0.6626 -0.0036 6 1 4.4191 -1.2245 -0.0071 7 6 2.3263 -1.1089 0.0032 8 6 1.8899 -2.5093 0.0071 9 8 0.7085 -2.7788 -0.1056 10 7 2.7972 -3.4976 0.1356 11 6 4.2027 -3.1729 0.3912 12 6 2.3779 -4.8964 0.0196 13 1 1.3017 -4.9658 -0.1384 14 6 2.8013 -5.7024 1.2761 15 6 2.9059 -7.1392 0.7007 16 7 3.4620 -6.9611 -0.6531 17 6 4.1552 -7.9058 -1.3617 18 1 4.6593 -7.6321 -2.2768 19 6 4.2099 -9.2151 -0.9040 20 7 3.4343 -9.5984 0.0879 21 14 5.3844 -10.4329 -1.6957 22 1 4.6675 -11.2017 -2.7447 23 1 6.5198 -9.6984 -2.3092 24 1 5.8995 -11.3671 -0.6625 25 6 3.1436 -5.6034 -1.1186 26 1 -0.3634 0.0033 1.0276 27 1 -0.3632 0.8883 -0.5168 28 1 -0.3633 -0.8917 -0.5110 29 1 2.0137 2.1548 0.0004 30 1 4.4973 1.3252 -0.0110 31 1 4.7027 -2.9550 -0.5525 32 1 4.2615 -2.3014 1.0432 33 1 4.6896 -4.0207 0.8732 34 1 3.7638 -5.3585 1.6548 35 1 2.0369 -5.6479 2.0511 36 1 1.9205 -7.6020 0.6481 37 1 3.5777 -7.7435 1.3103 38 1 3.4727 -10.5133 0.4080 39 1 4.0635 -5.0617 -1.3388 40 1 2.5184 -5.6543 -2.0100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033051297.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:30 Heat of formation + Delta-G solvation = 58.908393 kcal Electronic energy + Delta-G solvation = -21825.537829 eV Core-core repulsion = 18642.766698 eV Total energy + Delta-G solvation = -3182.771131 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.57366 -39.32021 -37.28989 -35.08776 -32.67974 -32.07663 -30.03648 -29.07695 -27.73470 -27.49813 -26.11132 -24.49885 -22.28631 -21.08124 -20.31203 -19.47852 -19.01739 -17.64656 -16.96898 -16.50615 -15.50992 -15.46208 -14.69793 -14.27703 -14.08666 -13.89458 -13.75421 -13.29130 -13.15329 -12.87588 -12.69280 -12.49223 -12.29050 -12.03292 -11.93639 -11.67090 -11.58639 -11.01001 -10.92532 -10.84314 -10.48701 -10.12394 -9.93284 -9.73391 -9.69421 -8.86360 -8.63932 -8.54474 -8.15025 -6.86364 -5.79545 -3.12677 1.45576 2.64236 2.93240 3.18087 3.36621 3.41697 3.43229 3.44416 4.46115 4.57129 4.82967 4.89090 5.09633 5.13388 5.23732 5.37166 5.44390 5.45375 5.52747 5.64258 5.69468 5.82174 5.85134 5.88068 6.08291 6.12532 6.27453 6.33840 6.48816 6.49184 6.63510 6.65886 6.86841 6.97524 7.27903 7.41566 7.48551 7.55473 7.72559 8.19322 8.27009 9.13644 9.75454 10.42365 11.33485 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038183 B = 0.003845 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.141126 B = 7280.319120 C = 7616.064959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.079 4.079 3 C -0.213 4.213 4 C 0.014 3.986 5 N -0.546 5.546 6 H 0.421 0.579 7 C -0.052 4.052 8 C 0.587 3.413 9 O -0.529 6.529 10 N -0.602 5.602 11 C 0.059 3.941 12 C 0.128 3.872 13 H 0.108 0.892 14 C -0.155 4.155 15 C 0.175 3.825 16 N -0.601 5.601 17 C -0.232 4.232 18 H 0.076 0.924 19 C -0.005 4.005 20 N -0.916 5.916 21 Si 0.911 3.089 22 H -0.288 1.288 23 H -0.281 1.281 24 H -0.289 1.289 25 C 0.130 3.870 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.169 0.831 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.031 0.969 37 H 0.071 0.929 38 H 0.254 0.746 39 H 0.025 0.975 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.588 19.772 2.576 20.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.237 4.237 4 C -0.122 4.122 5 N -0.150 5.150 6 H 0.267 0.733 7 C -0.165 4.165 8 C 0.376 3.624 9 O -0.405 6.405 10 N -0.334 5.334 11 C -0.085 4.085 12 C 0.026 3.974 13 H 0.126 0.874 14 C -0.194 4.194 15 C 0.050 3.950 16 N -0.327 5.327 17 C -0.360 4.360 18 H 0.094 0.906 19 C -0.202 4.202 20 N -0.563 5.563 21 Si 0.741 3.259 22 H -0.215 1.215 23 H -0.206 1.206 24 H -0.216 1.216 25 C 0.003 3.997 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.158 0.842 30 H 0.186 0.814 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.049 0.951 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.145 19.224 2.526 19.423 hybrid contribution 1.221 -0.818 -0.433 1.532 sum 2.366 18.406 2.093 18.675 Atomic orbital electron populations 1.20355 0.89409 1.03004 1.02076 1.19951 0.95866 0.90754 1.02186 1.20781 0.91894 0.98654 1.12406 1.22039 0.99481 0.83541 1.07098 1.43120 1.07806 1.07376 1.56688 0.73328 1.20274 0.83688 0.93656 1.18834 1.17123 0.85609 0.82948 0.76698 1.90787 1.16081 1.82955 1.50706 1.47733 1.07784 1.06820 1.71038 1.22082 0.83170 1.02632 1.00568 1.22264 1.00639 0.77548 0.96989 0.87445 1.23437 1.00393 0.99294 0.96262 1.21443 0.98254 0.89617 0.85734 1.44444 1.64584 1.09239 1.14483 1.19005 1.23452 0.87986 1.05583 0.90621 1.24829 0.99583 0.96686 0.99119 1.69958 1.39646 1.17170 1.29524 0.86122 0.80504 0.81016 0.78214 1.21547 1.20611 1.21566 1.21526 0.96062 0.87764 0.94394 0.91742 0.92155 0.89885 0.84221 0.81408 0.92399 0.91428 0.88698 0.91790 0.91711 0.95078 0.91032 0.93605 0.95687 0.95600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.12 9.90 36.01 0.36 -0.77 16 2 C -0.08 -1.04 6.21 -104.16 -0.65 -1.68 16 3 C -0.21 -2.22 10.76 -39.98 -0.43 -2.65 16 4 C 0.01 0.13 11.89 -16.91 -0.20 -0.07 16 5 N -0.55 -5.60 5.09 -9.39 -0.05 -5.65 16 6 H 0.42 3.41 4.86 -40.82 -0.20 3.21 16 7 C -0.05 -0.72 6.65 -81.98 -0.55 -1.26 16 8 C 0.59 9.67 7.63 -12.85 -0.10 9.57 16 9 O -0.53 -10.23 14.17 5.19 0.07 -10.15 16 10 N -0.60 -9.34 2.88 -173.37 -0.50 -9.84 16 11 C 0.06 0.68 7.54 59.85 0.45 1.13 16 12 C 0.13 2.38 3.35 -66.09 -0.22 2.16 16 13 H 0.11 2.17 7.01 -51.93 -0.36 1.80 16 14 C -0.15 -2.88 6.60 -24.46 -0.16 -3.04 16 15 C 0.17 4.17 5.43 -2.40 -0.01 4.16 16 16 N -0.60 -15.22 3.39 -169.93 -0.58 -15.80 16 17 C -0.23 -6.42 10.23 -15.06 -0.15 -6.57 16 18 H 0.08 2.03 7.85 -52.48 -0.41 1.62 16 19 C -0.01 -0.15 5.39 -17.43 -0.09 -0.24 16 20 N -0.92 -26.64 10.72 55.49 0.59 -26.05 16 21 Si 0.91 21.78 29.57 -169.99 -5.03 16.75 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C 0.13 2.74 6.88 -3.07 -0.02 2.72 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.20 6.38 -51.93 -0.33 0.86 16 29 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.17 0.85 8.06 -52.48 -0.42 0.43 16 31 H 0.06 0.58 7.49 -51.93 -0.39 0.20 16 32 H 0.07 0.63 5.55 -51.93 -0.29 0.34 16 33 H 0.09 1.16 6.14 -51.93 -0.32 0.84 16 34 H 0.06 1.10 6.15 -51.93 -0.32 0.78 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 37 H 0.07 1.87 6.96 -51.93 -0.36 1.51 16 38 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.03 0.50 7.08 -51.93 -0.37 0.14 16 40 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 316.12 15.07 4.76 4.76 Total: -1.00 -32.73 316.12 -7.94 -40.67 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.44 Total: 1.85 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -1.78 Total: 3.45 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.53 Total: -57.33 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.07 Total: -10.15 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.73 -7.94 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033051297.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.580 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds