Wall clock time and date at job start Mon Mar 30 2020 02:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39833 * 126.45660 * 2 1 4 4 C 1.35453 * 107.86277 * 180.26074 * 3 2 1 5 5 N 1.35537 * 108.87187 * 359.73492 * 4 3 2 6 6 H 0.97005 * 125.67951 * 179.97438 * 5 4 3 7 7 C 1.37647 * 108.64438 * 0.02562 * 5 4 3 8 8 C 1.46675 * 126.23285 * 179.97438 * 7 5 4 9 9 O 1.21700 * 120.00013 * 186.47168 * 8 7 5 10 10 N 1.34776 * 120.00419 * 6.47746 * 8 7 5 11 11 C 1.46499 * 119.99541 * 5.45964 * 10 8 7 12 12 C 1.46494 * 120.00109 * 185.46713 * 10 8 7 13 13 H 1.08994 * 110.78113 * 358.21135 * 12 10 8 14 14 C 1.55166 * 110.71703 * 234.97252 * 12 10 8 15 15 C 1.55132 * 101.48555 * 205.96882 * 14 12 10 16 16 N 1.47435 * 104.71989 * 37.29431 * 15 14 12 17 17 C 1.36936 * 125.64147 * 155.81333 * 16 15 14 18 18 H 1.08006 * 119.99400 * 189.89300 * 17 16 15 19 19 C 1.38810 * 120.00654 * 9.89788 * 17 16 15 20 20 N 1.31619 * 119.99480 * 10.51600 * 19 17 16 21 21 Si 1.86792 * 120.00196 * 190.52276 * 19 17 16 22 22 H 1.48506 * 109.47157 * 265.10530 * 21 19 17 23 23 H 1.48499 * 109.47430 * 25.10383 * 21 19 17 24 24 H 1.48501 * 109.47366 * 145.10856 * 21 19 17 25 25 C 1.47013 * 108.70476 * 335.55359 * 16 15 14 26 26 H 1.08998 * 109.47323 * 270.18381 * 1 2 3 27 27 H 1.08997 * 109.46432 * 30.18951 * 1 2 3 28 28 H 1.09001 * 109.46963 * 150.18505 * 1 2 3 29 29 H 1.07993 * 126.07166 * 0.02562 * 3 2 1 30 30 H 1.08004 * 125.56854 * 179.76115 * 4 3 2 31 31 H 1.08998 * 109.47813 * 276.11514 * 11 10 8 32 32 H 1.09003 * 109.47039 * 36.12126 * 11 10 8 33 33 H 1.09004 * 109.47008 * 156.11269 * 11 10 8 34 34 H 1.09000 * 111.00385 * 324.20914 * 14 12 10 35 35 H 1.08993 * 111.00447 * 88.02321 * 14 12 10 36 36 H 1.08997 * 110.49472 * 278.45670 * 15 14 12 37 37 H 1.08995 * 110.34123 * 156.05810 * 15 14 12 38 38 H 0.97002 * 119.99833 * 180.02562 * 20 19 17 39 39 H 1.09004 * 109.88526 * 120.70253 * 25 16 15 40 40 H 1.08995 * 109.88608 * 241.86961 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1247 0.0000 4 6 3.6218 0.6928 -0.0059 5 7 3.6284 -0.6626 -0.0036 6 1 4.4191 -1.2245 -0.0071 7 6 2.3263 -1.1089 0.0032 8 6 1.8899 -2.5093 0.0071 9 8 0.7085 -2.7788 -0.1056 10 7 2.7972 -3.4976 0.1356 11 6 4.2027 -3.1729 0.3912 12 6 2.3779 -4.8964 0.0196 13 1 1.3017 -4.9658 -0.1384 14 6 2.8013 -5.7024 1.2761 15 6 2.9059 -7.1392 0.7007 16 7 3.4620 -6.9611 -0.6531 17 6 4.1552 -7.9058 -1.3617 18 1 4.6593 -7.6321 -2.2768 19 6 4.2099 -9.2151 -0.9040 20 7 3.4343 -9.5984 0.0879 21 14 5.3844 -10.4329 -1.6957 22 1 4.6675 -11.2017 -2.7447 23 1 6.5198 -9.6984 -2.3092 24 1 5.8995 -11.3671 -0.6625 25 6 3.1436 -5.6034 -1.1186 26 1 -0.3634 0.0033 1.0276 27 1 -0.3632 0.8883 -0.5168 28 1 -0.3633 -0.8917 -0.5110 29 1 2.0137 2.1548 0.0004 30 1 4.4973 1.3252 -0.0110 31 1 4.7027 -2.9550 -0.5525 32 1 4.2615 -2.3014 1.0432 33 1 4.6896 -4.0207 0.8732 34 1 3.7638 -5.3585 1.6548 35 1 2.0369 -5.6479 2.0511 36 1 1.9205 -7.6020 0.6481 37 1 3.5777 -7.7435 1.3103 38 1 3.4727 -10.5133 0.4080 39 1 4.0635 -5.0617 -1.3388 40 1 2.5184 -5.6543 -2.0100 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033051297.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:29 Heat of formation + Delta-G solvation = 37.945661 kcal Electronic energy + Delta-G solvation = -21826.446841 eV Core-core repulsion = 18642.766698 eV Total energy + Delta-G solvation = -3183.680143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.48884 -40.59448 -38.86743 -36.51490 -34.26822 -33.33091 -31.43543 -30.55161 -29.10715 -28.66511 -27.30896 -26.33071 -23.50106 -22.24700 -21.89931 -20.91671 -19.94531 -18.94359 -18.72177 -17.76812 -16.83629 -16.62190 -16.51640 -15.92804 -15.40218 -15.03447 -14.66650 -14.58882 -14.47216 -14.11865 -13.88640 -13.77192 -13.63105 -13.53660 -13.14807 -12.94593 -12.85919 -12.73213 -12.51616 -12.50664 -12.21614 -12.02181 -11.85466 -11.55281 -11.00352 -10.71641 -9.86147 -9.63360 -9.07789 -8.92761 -7.91311 -5.27576 0.46125 1.46472 1.47538 1.57514 1.77725 1.85067 2.26852 2.36283 2.49073 3.28614 3.50142 3.66777 3.80767 3.91290 3.94540 4.17150 4.25277 4.29329 4.35432 4.41931 4.48175 4.53016 4.69829 4.82662 4.89747 4.90746 4.96628 4.99892 5.02843 5.19826 5.39292 5.46151 5.47978 5.51274 5.64911 5.82414 6.01693 6.14879 6.33672 6.58193 7.02866 7.04833 7.69746 8.36260 9.20687 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.038183 B = 0.003845 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.141126 B = 7280.319120 C = 7616.064959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.092 4.092 3 C -0.228 4.228 4 C 0.045 3.955 5 N -0.538 5.538 6 H 0.431 0.569 7 C -0.087 4.087 8 C 0.581 3.419 9 O -0.572 6.572 10 N -0.601 5.601 11 C 0.053 3.947 12 C 0.144 3.856 13 H 0.085 0.915 14 C -0.133 4.133 15 C 0.181 3.819 16 N -0.619 5.619 17 C -0.248 4.248 18 H 0.081 0.919 19 C -0.060 4.060 20 N -0.948 5.948 21 Si 0.980 3.020 22 H -0.289 1.289 23 H -0.266 1.266 24 H -0.291 1.291 25 C 0.132 3.868 26 H 0.065 0.935 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.162 0.838 30 H 0.216 0.784 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.078 0.922 36 H -0.004 1.004 37 H 0.044 0.956 38 H 0.250 0.750 39 H 0.045 0.955 40 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.046 22.578 2.513 23.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 C -0.252 4.252 4 C -0.092 4.092 5 N -0.142 5.142 6 H 0.279 0.721 7 C -0.199 4.199 8 C 0.373 3.627 9 O -0.452 6.452 10 N -0.332 5.332 11 C -0.089 4.089 12 C 0.039 3.961 13 H 0.103 0.897 14 C -0.173 4.173 15 C 0.056 3.944 16 N -0.346 5.346 17 C -0.377 4.377 18 H 0.098 0.902 19 C -0.254 4.254 20 N -0.595 5.595 21 Si 0.808 3.192 22 H -0.216 1.216 23 H -0.190 1.190 24 H -0.217 1.217 25 C 0.006 3.994 26 H 0.084 0.916 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.180 0.820 30 H 0.233 0.767 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.014 0.986 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 3.640 22.061 2.457 22.493 hybrid contribution 0.445 -1.563 -0.445 1.685 sum 4.085 20.497 2.012 20.997 Atomic orbital electron populations 1.20325 0.89826 1.02587 1.02052 1.20285 0.96200 0.91865 1.01809 1.21110 0.92162 0.98972 1.12932 1.22818 1.00528 0.82950 1.02876 1.43088 1.06797 1.08204 1.56130 0.72142 1.19876 0.85580 0.92058 1.22415 1.17572 0.85110 0.84169 0.75825 1.90760 1.17917 1.83774 1.52741 1.47688 1.09504 1.05083 1.70973 1.22356 0.80645 1.03629 1.02265 1.21779 0.99037 0.79539 0.95735 0.89719 1.23236 1.02095 0.95575 0.96350 1.21207 0.95502 0.92289 0.85446 1.44713 1.64420 1.10378 1.15105 1.19397 1.23575 0.88824 1.05904 0.90151 1.25689 1.01248 0.98507 0.99937 1.70158 1.41153 1.17223 1.31007 0.85049 0.78637 0.78442 0.77063 1.21608 1.19022 1.21724 1.21589 0.96802 0.86396 0.94661 0.91612 0.90021 0.92746 0.82022 0.76738 0.90418 0.88695 0.89047 0.89522 0.90378 0.98575 0.93718 0.94097 0.93693 0.97231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.22 9.90 71.24 0.71 -1.51 16 2 C -0.09 -2.27 6.21 -19.56 -0.12 -2.39 16 3 C -0.23 -3.92 10.76 22.01 0.24 -3.68 16 4 C 0.05 0.57 11.89 83.48 0.99 1.57 16 5 N -0.54 -9.00 5.09 -183.62 -0.93 -9.93 16 6 H 0.43 5.14 4.86 -92.70 -0.45 4.69 16 7 C -0.09 -2.27 6.65 40.35 0.27 -2.00 16 8 C 0.58 19.09 7.63 86.45 0.66 19.75 16 9 O -0.57 -23.05 14.17 -4.35 -0.06 -23.11 16 10 N -0.60 -18.12 2.88 -820.65 -2.37 -20.49 16 11 C 0.05 1.08 7.54 127.77 0.96 2.04 16 12 C 0.14 5.38 3.35 46.19 0.15 5.54 16 13 H 0.08 3.58 7.01 -2.39 -0.02 3.57 16 14 C -0.13 -4.97 6.60 32.07 0.21 -4.76 16 15 C 0.18 8.95 5.43 86.93 0.47 9.42 16 16 N -0.62 -32.03 3.39 -691.54 -2.35 -34.38 16 17 C -0.25 -13.89 10.23 84.03 0.86 -13.03 16 18 H 0.08 4.31 7.85 -2.91 -0.02 4.28 16 19 C -0.06 -3.39 5.39 84.86 0.46 -2.94 16 20 N -0.95 -56.79 10.72 21.65 0.23 -56.56 16 21 Si 0.98 45.12 29.57 68.60 2.03 47.15 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 25 C 0.13 5.62 6.88 86.73 0.60 6.22 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.64 6.38 -2.39 -0.02 1.63 16 29 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 30 H 0.22 0.67 8.06 -2.91 -0.02 0.65 16 31 H 0.08 1.29 7.49 -2.39 -0.02 1.28 16 32 H 0.10 1.42 5.55 -2.39 -0.01 1.40 16 33 H 0.09 1.97 6.14 -2.38 -0.01 1.95 16 34 H 0.09 2.85 6.15 -2.39 -0.01 2.83 16 35 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.00 -0.21 8.07 -2.39 -0.02 -0.23 16 37 H 0.04 2.42 6.96 -2.39 -0.02 2.41 16 38 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 39 H 0.05 1.75 7.08 -2.39 -0.02 1.73 16 40 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -74.63 316.12 3.62 -71.01 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.61 Total: 12.08 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 6.46 Total: 14.22 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -5.41 Total: -121.35 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.06 Total: -23.11 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -74.63 3.62 -71.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033051297.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.958 kcal (2) G-P(sol) polarization free energy of solvation -74.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds