Wall clock time and date at job start Mon Mar 30 2020 02:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39830 * 126.45670 * 2 1 4 4 C 1.35456 * 107.86291 * 180.26008 * 3 2 1 5 5 N 1.35528 * 108.87347 * 359.74685 * 4 3 2 6 6 H 0.96994 * 125.67962 * 180.02562 * 5 4 3 7 7 C 1.37654 * 108.64571 * 359.97438 * 5 4 3 8 8 C 1.46673 * 126.23596 * 179.97438 * 7 5 4 9 9 O 1.21698 * 119.99926 * 76.43296 * 8 7 5 10 10 N 1.34775 * 120.00414 * 256.42759 * 8 7 5 11 11 C 1.46502 * 119.99858 * 354.80696 * 10 8 7 12 12 C 1.46502 * 120.00033 * 174.81209 * 10 8 7 13 13 H 1.08993 * 110.88648 * 356.11359 * 12 10 8 14 14 C 1.55158 * 111.00587 * 120.00053 * 12 10 8 15 15 C 1.54329 * 102.93991 * 82.60616 * 14 12 10 16 16 N 1.47021 * 107.27376 * 22.19426 * 15 14 12 17 17 C 1.36932 * 125.64945 * 181.01791 * 16 15 14 18 18 H 1.08002 * 120.00185 * 185.24929 * 17 16 15 19 19 C 1.38809 * 120.00159 * 5.25512 * 17 16 15 20 20 N 1.31624 * 119.99938 * 5.71079 * 19 17 16 21 21 Si 1.86801 * 120.00188 * 185.44276 * 19 17 16 22 22 H 1.48503 * 109.46651 * 265.27389 * 21 19 17 23 23 H 1.48497 * 109.47253 * 25.27384 * 21 19 17 24 24 H 1.48501 * 109.47117 * 145.27855 * 21 19 17 25 25 C 1.47428 * 108.70208 * 1.28580 * 16 15 14 26 26 H 1.08996 * 109.47229 * 270.17955 * 1 2 3 27 27 H 1.08998 * 109.47488 * 30.18137 * 1 2 3 28 28 H 1.09002 * 109.46980 * 150.18109 * 1 2 3 29 29 H 1.07999 * 126.06972 * 0.02562 * 3 2 1 30 30 H 1.07996 * 125.56256 * 179.76271 * 4 3 2 31 31 H 1.08997 * 109.47595 * 273.63665 * 11 10 8 32 32 H 1.09003 * 109.46998 * 33.63695 * 11 10 8 33 33 H 1.09000 * 109.46732 * 153.63299 * 11 10 8 34 34 H 1.09003 * 110.71676 * 324.24785 * 14 12 10 35 35 H 1.08998 * 110.87138 * 201.03954 * 14 12 10 36 36 H 1.08997 * 109.88067 * 262.77415 * 15 14 12 37 37 H 1.09000 * 110.00654 * 141.68679 * 15 14 12 38 38 H 0.96999 * 120.00292 * 179.72524 * 20 19 17 39 39 H 1.09001 * 110.36853 * 94.48226 * 25 16 15 40 40 H 1.09002 * 110.36635 * 216.80672 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 -0.0059 5 7 3.6284 -0.6625 -0.0039 6 1 4.4190 -1.2244 -0.0067 7 6 2.3263 -1.1090 0.0040 8 6 1.8899 -2.5093 0.0079 9 8 1.9506 -3.1627 1.0328 10 7 1.4214 -3.0724 -1.1234 11 6 1.2410 -2.2571 -2.3271 12 6 1.0926 -4.4998 -1.1493 13 1 1.3461 -4.9743 -0.2014 14 6 -0.4029 -4.7198 -1.4991 15 6 -0.4142 -4.6308 -3.0398 16 7 0.9501 -4.9221 -3.5039 17 6 1.3656 -4.9253 -4.8087 18 1 2.3705 -5.2351 -5.0547 19 6 0.4952 -4.5302 -5.8152 20 7 -0.6898 -4.0465 -5.5082 21 14 1.0084 -4.6782 -7.6052 22 1 1.5745 -3.3851 -8.0663 23 1 2.0341 -5.7436 -7.7397 24 1 -0.1754 -5.0234 -8.4327 25 6 1.7952 -5.2165 -2.3323 26 1 -0.3633 0.0032 1.0276 27 1 -0.3634 0.8883 -0.5166 28 1 -0.3633 -0.8916 -0.5110 29 1 2.0136 2.1548 0.0004 30 1 4.4971 1.3252 -0.0110 31 1 0.2580 -1.7868 -2.3035 32 1 2.0115 -1.4869 -2.3632 33 1 1.3193 -2.8910 -3.2103 34 1 -1.0205 -3.9345 -1.0630 35 1 -0.7390 -5.7021 -1.1671 36 1 -0.7055 -3.6277 -3.3510 37 1 -1.1097 -5.3627 -3.4505 38 1 -1.2965 -3.7667 -6.2115 39 1 1.8383 -6.2913 -2.1561 40 1 2.7979 -4.8144 -2.4773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033051298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:33 Heat of formation + Delta-G solvation = 47.261768 kcal Electronic energy + Delta-G solvation = -22488.668255 eV Core-core repulsion = 19305.392088 eV Total energy + Delta-G solvation = -3183.276166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.24269 -39.31913 -37.30394 -34.23543 -32.61723 -32.12121 -29.80470 -29.15113 -27.79806 -26.87604 -25.79542 -24.36177 -22.40077 -20.65066 -20.10945 -19.60540 -18.56731 -17.70085 -16.94705 -16.50159 -15.28333 -14.94549 -14.72065 -14.32160 -13.87886 -13.77885 -13.51210 -13.10516 -12.84067 -12.73602 -12.57405 -12.12277 -11.98978 -11.96674 -11.69742 -11.56599 -11.29003 -10.99325 -10.90048 -10.77160 -10.29304 -10.16399 -9.97768 -9.74145 -9.55228 -8.74562 -8.69662 -8.19492 -7.97494 -6.86517 -5.78248 -3.15049 2.01217 2.53189 2.89763 3.30225 3.34939 3.41537 3.42860 3.72114 4.43219 4.86326 5.07271 5.23543 5.33064 5.40976 5.42242 5.47608 5.65903 5.76680 5.85072 5.86774 5.89096 6.07672 6.11806 6.20963 6.26591 6.31795 6.39478 6.48750 6.52246 6.61069 6.84038 6.91887 7.06504 7.10266 7.44650 7.49293 7.58746 7.75655 7.79988 8.17554 8.40015 9.13098 9.72907 10.38168 11.30724 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020902 B = 0.005432 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.276089 B = 5153.015648 C = 5608.097184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.118 4.118 3 C -0.201 4.201 4 C 0.001 3.999 5 N -0.531 5.531 6 H 0.417 0.583 7 C -0.026 4.026 8 C 0.582 3.418 9 O -0.548 6.548 10 N -0.572 5.572 11 C 0.063 3.937 12 C 0.122 3.878 13 H 0.099 0.901 14 C -0.154 4.154 15 C 0.168 3.832 16 N -0.601 5.601 17 C -0.234 4.234 18 H 0.077 0.923 19 C -0.003 4.003 20 N -0.916 5.916 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.282 1.282 24 H -0.290 1.290 25 C 0.125 3.875 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.138 0.862 30 H 0.167 0.833 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.128 0.872 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.031 0.969 38 H 0.253 0.747 39 H 0.034 0.966 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.037 7.925 9.241 13.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.125 4.125 3 C -0.226 4.226 4 C -0.133 4.133 5 N -0.125 5.125 6 H 0.254 0.746 7 C -0.140 4.140 8 C 0.368 3.632 9 O -0.427 6.427 10 N -0.303 5.303 11 C -0.079 4.079 12 C 0.018 3.982 13 H 0.117 0.883 14 C -0.193 4.193 15 C 0.044 3.956 16 N -0.328 5.328 17 C -0.362 4.362 18 H 0.095 0.905 19 C -0.200 4.200 20 N -0.563 5.563 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.207 1.207 24 H -0.216 1.216 25 C -0.001 4.001 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.156 0.844 30 H 0.184 0.816 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.146 0.854 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.083 7.495 9.525 13.143 hybrid contribution 0.592 -0.181 -1.055 1.223 sum 5.675 7.314 8.471 12.548 Atomic orbital electron populations 1.20252 0.89887 1.02612 1.01684 1.19773 0.95385 0.90992 1.06397 1.20662 0.91812 0.98440 1.11666 1.21830 0.99384 0.82758 1.09337 1.41731 1.06742 1.07071 1.56960 0.74597 1.19996 0.84430 0.93689 1.15920 1.17255 0.78147 0.84347 0.83454 1.90786 1.56699 1.63358 1.31814 1.47681 1.62073 1.09588 1.10923 1.22316 1.00117 0.96166 0.89319 1.22338 0.96310 0.79806 0.99774 0.88311 1.23224 0.94814 1.00947 1.00345 1.21324 0.86504 1.01362 0.86436 1.44591 1.05433 1.81668 1.01098 1.19013 0.97724 1.38438 0.80994 0.90519 1.24787 0.96501 1.00759 0.97995 1.69949 1.08149 1.47149 1.31080 0.86141 0.77323 0.77679 0.84840 1.21612 1.20713 1.21641 1.21952 0.94584 0.96458 0.87155 0.91898 0.91448 0.91736 0.84373 0.81593 0.93018 0.92887 0.85355 0.91771 0.91399 0.91556 0.95102 0.93642 0.94876 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.16 10.20 36.01 0.37 -0.79 16 2 C -0.12 -1.71 5.98 -104.16 -0.62 -2.34 16 3 C -0.20 -2.48 10.76 -39.98 -0.43 -2.91 16 4 C 0.00 0.01 11.89 -16.91 -0.20 -0.19 16 5 N -0.53 -6.66 6.10 -9.39 -0.06 -6.72 16 6 H 0.42 4.30 8.96 -40.82 -0.37 3.93 16 7 C -0.03 -0.40 5.11 -81.98 -0.42 -0.82 16 8 C 0.58 10.47 7.16 -12.86 -0.09 10.38 16 9 O -0.55 -11.27 16.51 5.19 0.09 -11.19 16 10 N -0.57 -10.30 2.91 -172.88 -0.50 -10.81 16 11 C 0.06 1.16 8.20 59.85 0.49 1.65 16 12 C 0.12 2.25 3.65 -65.66 -0.24 2.01 16 13 H 0.10 1.80 7.04 -51.93 -0.37 1.43 16 14 C -0.15 -2.88 6.48 -24.89 -0.16 -3.04 16 15 C 0.17 3.84 4.38 -3.06 -0.01 3.83 16 16 N -0.60 -14.22 1.86 -169.93 -0.32 -14.54 16 17 C -0.23 -6.09 9.79 -15.06 -0.15 -6.24 16 18 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 19 C 0.00 -0.09 5.46 -17.43 -0.10 -0.19 16 20 N -0.92 -25.29 10.41 55.49 0.58 -24.71 16 21 Si 0.91 21.20 29.56 -169.99 -5.02 16.17 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 C 0.13 2.52 6.46 -2.41 -0.02 2.50 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.94 6.67 -51.93 -0.35 0.59 16 29 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.05 0.94 7.00 -51.93 -0.36 0.58 16 32 H 0.05 0.91 6.92 -51.93 -0.36 0.55 16 33 H 0.13 2.82 4.51 -51.93 -0.23 2.58 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.65 5.98 -51.93 -0.31 1.34 16 37 H 0.03 0.79 7.91 -51.93 -0.41 0.37 16 38 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 320.27 15.07 4.83 4.83 Total: -1.00 -30.23 320.27 -7.68 -37.90 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.68 Total: 5.19 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -1.58 Total: 3.86 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.30 Total: -56.77 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.23 -7.68 -37.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033051298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.163 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds