Wall clock time and date at job start Mon Mar 30 2020 02:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39830 * 126.45670 * 2 1 4 4 C 1.35456 * 107.86291 * 180.26008 * 3 2 1 5 5 N 1.35528 * 108.87347 * 359.74685 * 4 3 2 6 6 H 0.96994 * 125.67962 * 180.02562 * 5 4 3 7 7 C 1.37654 * 108.64571 * 359.97438 * 5 4 3 8 8 C 1.46673 * 126.23596 * 179.97438 * 7 5 4 9 9 O 1.21698 * 119.99926 * 76.43296 * 8 7 5 10 10 N 1.34775 * 120.00414 * 256.42759 * 8 7 5 11 11 C 1.46502 * 119.99858 * 354.80696 * 10 8 7 12 12 C 1.46502 * 120.00033 * 174.81209 * 10 8 7 13 13 H 1.08993 * 110.88648 * 356.11359 * 12 10 8 14 14 C 1.55158 * 111.00587 * 120.00053 * 12 10 8 15 15 C 1.54329 * 102.93991 * 82.60616 * 14 12 10 16 16 N 1.47021 * 107.27376 * 22.19426 * 15 14 12 17 17 C 1.36932 * 125.64945 * 181.01791 * 16 15 14 18 18 H 1.08002 * 120.00185 * 185.24929 * 17 16 15 19 19 C 1.38809 * 120.00159 * 5.25512 * 17 16 15 20 20 N 1.31624 * 119.99938 * 5.71079 * 19 17 16 21 21 Si 1.86801 * 120.00188 * 185.44276 * 19 17 16 22 22 H 1.48503 * 109.46651 * 265.27389 * 21 19 17 23 23 H 1.48497 * 109.47253 * 25.27384 * 21 19 17 24 24 H 1.48501 * 109.47117 * 145.27855 * 21 19 17 25 25 C 1.47428 * 108.70208 * 1.28580 * 16 15 14 26 26 H 1.08996 * 109.47229 * 270.17955 * 1 2 3 27 27 H 1.08998 * 109.47488 * 30.18137 * 1 2 3 28 28 H 1.09002 * 109.46980 * 150.18109 * 1 2 3 29 29 H 1.07999 * 126.06972 * 0.02562 * 3 2 1 30 30 H 1.07996 * 125.56256 * 179.76271 * 4 3 2 31 31 H 1.08997 * 109.47595 * 273.63665 * 11 10 8 32 32 H 1.09003 * 109.46998 * 33.63695 * 11 10 8 33 33 H 1.09000 * 109.46732 * 153.63299 * 11 10 8 34 34 H 1.09003 * 110.71676 * 324.24785 * 14 12 10 35 35 H 1.08998 * 110.87138 * 201.03954 * 14 12 10 36 36 H 1.08997 * 109.88067 * 262.77415 * 15 14 12 37 37 H 1.09000 * 110.00654 * 141.68679 * 15 14 12 38 38 H 0.96999 * 120.00292 * 179.72524 * 20 19 17 39 39 H 1.09001 * 110.36853 * 94.48226 * 25 16 15 40 40 H 1.09002 * 110.36635 * 216.80672 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 -0.0059 5 7 3.6284 -0.6625 -0.0039 6 1 4.4190 -1.2244 -0.0067 7 6 2.3263 -1.1090 0.0040 8 6 1.8899 -2.5093 0.0079 9 8 1.9506 -3.1627 1.0328 10 7 1.4214 -3.0724 -1.1234 11 6 1.2410 -2.2571 -2.3271 12 6 1.0926 -4.4998 -1.1493 13 1 1.3461 -4.9743 -0.2014 14 6 -0.4029 -4.7198 -1.4991 15 6 -0.4142 -4.6308 -3.0398 16 7 0.9501 -4.9221 -3.5039 17 6 1.3656 -4.9253 -4.8087 18 1 2.3705 -5.2351 -5.0547 19 6 0.4952 -4.5302 -5.8152 20 7 -0.6898 -4.0465 -5.5082 21 14 1.0084 -4.6782 -7.6052 22 1 1.5745 -3.3851 -8.0663 23 1 2.0341 -5.7436 -7.7397 24 1 -0.1754 -5.0234 -8.4327 25 6 1.7952 -5.2165 -2.3323 26 1 -0.3633 0.0032 1.0276 27 1 -0.3634 0.8883 -0.5166 28 1 -0.3633 -0.8916 -0.5110 29 1 2.0136 2.1548 0.0004 30 1 4.4971 1.3252 -0.0110 31 1 0.2580 -1.7868 -2.3035 32 1 2.0115 -1.4869 -2.3632 33 1 1.3193 -2.8910 -3.2103 34 1 -1.0205 -3.9345 -1.0630 35 1 -0.7390 -5.7021 -1.1671 36 1 -0.7055 -3.6277 -3.3510 37 1 -1.1097 -5.3627 -3.4505 38 1 -1.2965 -3.7667 -6.2115 39 1 1.8383 -6.2913 -2.1561 40 1 2.7979 -4.8144 -2.4773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033051298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:32 Heat of formation + Delta-G solvation = 29.448229 kcal Electronic energy + Delta-G solvation = -22489.440708 eV Core-core repulsion = 19305.392088 eV Total energy + Delta-G solvation = -3184.048619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.31663 -40.74523 -38.90980 -35.86811 -34.11561 -33.47550 -31.34644 -30.49989 -29.40944 -28.04195 -27.35662 -26.14176 -23.71330 -21.96089 -21.63322 -20.97126 -19.72459 -19.04514 -18.79134 -17.94327 -16.67131 -16.61245 -16.35235 -15.71659 -15.51970 -15.08552 -14.58701 -14.52029 -14.22008 -13.92233 -13.83191 -13.69836 -13.41988 -13.38592 -13.14965 -13.07752 -12.83476 -12.74401 -12.43513 -12.33883 -12.03601 -11.94760 -11.82387 -11.56719 -11.05790 -10.71520 -9.75326 -9.64902 -9.00732 -8.79325 -7.80367 -5.18144 0.92621 1.26781 1.49022 1.50521 1.58714 1.89734 2.05427 2.51206 2.61328 3.37382 3.56038 3.67887 3.88017 3.99811 4.23016 4.29172 4.29788 4.38087 4.46897 4.61301 4.68201 4.70068 4.84111 4.86357 4.87188 4.94975 5.03010 5.10630 5.15712 5.26266 5.42730 5.48077 5.56604 5.64658 5.82976 5.92853 6.06313 6.21941 6.34855 6.62742 6.98549 7.12283 7.77513 8.42161 9.27108 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.020902 B = 0.005432 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.276089 B = 5153.015648 C = 5608.097184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.125 4.125 3 C -0.219 4.219 4 C 0.026 3.974 5 N -0.528 5.528 6 H 0.426 0.574 7 C -0.068 4.068 8 C 0.588 3.412 9 O -0.578 6.578 10 N -0.573 5.573 11 C 0.083 3.917 12 C 0.130 3.870 13 H 0.109 0.891 14 C -0.141 4.141 15 C 0.181 3.819 16 N -0.613 5.613 17 C -0.239 4.239 18 H 0.079 0.921 19 C -0.054 4.054 20 N -0.941 5.941 21 Si 0.970 3.030 22 H -0.287 1.287 23 H -0.273 1.273 24 H -0.297 1.297 25 C 0.127 3.873 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.044 0.956 29 H 0.160 0.840 30 H 0.210 0.790 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.041 0.959 37 H -0.003 1.003 38 H 0.247 0.753 39 H 0.045 0.955 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.581 9.184 9.886 15.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.133 4.133 3 C -0.243 4.243 4 C -0.109 4.109 5 N -0.123 5.123 6 H 0.265 0.735 7 C -0.182 4.182 8 C 0.376 3.624 9 O -0.458 6.458 10 N -0.302 5.302 11 C -0.059 4.059 12 C 0.025 3.975 13 H 0.127 0.873 14 C -0.180 4.180 15 C 0.056 3.944 16 N -0.339 5.339 17 C -0.368 4.368 18 H 0.097 0.903 19 C -0.248 4.248 20 N -0.590 5.590 21 Si 0.799 3.201 22 H -0.214 1.214 23 H -0.198 1.198 24 H -0.224 1.224 25 C 0.001 3.999 26 H 0.086 0.914 27 H 0.103 0.897 28 H 0.064 0.936 29 H 0.178 0.822 30 H 0.227 0.773 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.059 0.941 37 H 0.015 0.985 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.655 8.739 10.185 14.980 hybrid contribution 0.163 -0.519 -1.210 1.327 sum 6.818 8.221 8.975 13.950 Atomic orbital electron populations 1.20273 0.89741 1.02489 1.01961 1.20092 0.95901 0.91632 1.05652 1.21009 0.92062 0.98922 1.12316 1.22573 1.00512 0.82159 1.05640 1.41809 1.06031 1.07939 1.56548 0.73547 1.19733 0.86176 0.92472 1.19867 1.17539 0.77042 0.85216 0.82577 1.90757 1.57813 1.64567 1.32662 1.47682 1.62206 1.09315 1.11047 1.21986 1.00339 0.95562 0.88053 1.22239 0.95602 0.80289 0.99349 0.87344 1.23103 0.95412 1.02354 0.97089 1.21038 0.85603 0.98753 0.88973 1.44725 1.06248 1.81556 1.01411 1.19298 0.97785 1.37475 0.82256 0.90304 1.25481 0.96722 1.01169 1.01402 1.70137 1.08984 1.48297 1.31562 0.85196 0.76687 0.77682 0.80530 1.21355 1.19841 1.22414 1.22043 0.94186 0.97209 0.86494 0.91409 0.89733 0.93648 0.82195 0.77302 0.93369 0.91742 0.88605 0.90988 0.89550 0.94052 0.98497 0.94348 0.93730 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.25 10.20 71.24 0.73 -1.52 16 2 C -0.12 -3.42 5.98 -19.56 -0.12 -3.54 16 3 C -0.22 -4.73 10.76 22.01 0.24 -4.49 16 4 C 0.03 0.47 11.89 83.48 0.99 1.46 16 5 N -0.53 -11.98 6.10 -183.62 -1.12 -13.10 16 6 H 0.43 7.82 8.96 -92.71 -0.83 6.99 16 7 C -0.07 -2.05 5.11 40.35 0.21 -1.85 16 8 C 0.59 20.81 7.16 86.45 0.62 21.43 16 9 O -0.58 -23.45 16.51 -4.34 -0.07 -23.52 16 10 N -0.57 -20.42 2.91 -819.09 -2.39 -22.81 16 11 C 0.08 3.08 8.20 127.77 1.05 4.13 16 12 C 0.13 4.70 3.65 46.46 0.17 4.87 16 13 H 0.11 3.81 7.04 -2.39 -0.02 3.79 16 14 C -0.14 -5.21 6.48 31.79 0.21 -5.00 16 15 C 0.18 8.47 4.38 86.73 0.38 8.85 16 16 N -0.61 -29.30 1.86 -691.52 -1.29 -30.59 16 17 C -0.24 -12.58 9.79 84.03 0.82 -11.76 16 18 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 19 C -0.05 -2.88 5.46 84.86 0.46 -2.42 16 20 N -0.94 -53.33 10.41 21.65 0.23 -53.11 16 21 Si 0.97 43.92 29.56 68.60 2.03 45.95 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 25 C 0.13 5.03 6.46 86.93 0.56 5.59 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.04 1.32 6.67 -2.39 -0.02 1.30 16 29 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 30 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 31 H 0.05 1.79 7.00 -2.39 -0.02 1.77 16 32 H 0.06 2.20 6.92 -2.39 -0.02 2.18 16 33 H 0.10 4.27 4.51 -2.39 -0.01 4.26 16 34 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.04 2.14 5.98 -2.39 -0.01 2.12 16 37 H 0.00 -0.17 7.91 -2.39 -0.02 -0.19 16 38 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -65.72 320.27 3.92 -61.79 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.22 Total: 19.63 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 6.31 Total: 15.75 kcal Atomic # 7 Polarization: -115.04 SS G_CDS: -4.57 Total: -119.61 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.07 Total: -23.52 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -65.72 3.92 -61.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033051298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.242 kcal (2) G-P(sol) polarization free energy of solvation -65.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds