Wall clock time and date at job start Mon Mar 30 2020 02:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34485 * 126.83176 * 2 1 4 4 N 1.36454 * 108.85429 * 180.26106 * 3 2 1 5 5 H 0.96998 * 124.84571 * 179.73278 * 4 3 2 6 6 C 1.34650 * 110.29632 * 359.71143 * 4 3 2 7 7 C 1.36764 * 108.40264 * 359.97438 * 6 4 3 8 8 C 1.47262 * 126.94914 * 179.97438 * 7 6 4 9 9 O 1.21620 * 120.00372 * 186.99732 * 8 7 6 10 10 N 1.34779 * 119.99578 * 7.00932 * 8 7 6 11 11 C 1.46497 * 120.00027 * 5.59817 * 10 8 7 12 12 C 1.46500 * 119.99994 * 185.60390 * 10 8 7 13 13 H 1.09002 * 110.88507 * 3.87901 * 12 10 8 14 14 C 1.55152 * 111.00739 * 239.99551 * 12 10 8 15 15 C 1.54319 * 102.94395 * 206.38418 * 14 12 10 16 16 N 1.47025 * 107.26978 * 22.19723 * 15 14 12 17 17 C 1.36943 * 125.64605 * 181.02495 * 16 15 14 18 18 H 1.07998 * 119.99820 * 186.07584 * 17 16 15 19 19 C 1.38810 * 120.00031 * 6.07319 * 17 16 15 20 20 N 1.31612 * 120.00055 * 7.90674 * 19 17 16 21 21 Si 1.86803 * 119.99785 * 187.63502 * 19 17 16 22 22 H 1.48500 * 109.46710 * 265.29032 * 21 19 17 23 23 H 1.48496 * 109.47091 * 25.28831 * 21 19 17 24 24 H 1.48496 * 109.47300 * 145.29212 * 21 19 17 25 25 C 1.47422 * 108.70275 * 1.28031 * 16 15 14 26 26 H 1.09000 * 109.47310 * 270.20211 * 1 2 3 27 27 H 1.08996 * 109.46774 * 30.20755 * 1 2 3 28 28 H 1.08998 * 109.46723 * 150.20443 * 1 2 3 29 29 H 1.08002 * 125.57327 * 359.97438 * 3 2 1 30 30 H 1.08001 * 125.80298 * 180.02562 * 6 4 3 31 31 H 1.08996 * 109.47508 * 275.74743 * 11 10 8 32 32 H 1.09005 * 109.46931 * 35.74986 * 11 10 8 33 33 H 1.09002 * 109.47046 * 155.74138 * 11 10 8 34 34 H 1.08996 * 110.71959 * 88.02220 * 14 12 10 35 35 H 1.09000 * 110.87122 * 324.81957 * 14 12 10 36 36 H 1.08992 * 109.88569 * 262.77669 * 15 14 12 37 37 H 1.09004 * 110.01258 * 141.68163 * 15 14 12 38 38 H 0.97000 * 120.00260 * 179.72465 * 20 19 17 39 39 H 1.08998 * 110.36077 * 94.49001 * 25 16 15 40 40 H 1.09000 * 110.36708 * 216.80516 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6112 0.6553 -0.0059 5 1 4.3840 1.2414 -0.0108 6 6 3.6657 -0.6901 -0.0034 7 6 2.3865 -1.1740 0.0048 8 6 1.9750 -2.5880 0.0096 9 8 0.8006 -2.8800 -0.1114 10 7 2.8999 -3.5585 0.1483 11 6 4.2964 -3.2065 0.4168 12 6 2.5088 -4.9654 0.0303 13 1 1.4558 -5.0549 -0.2367 14 6 2.8188 -5.7404 1.3381 15 6 3.0075 -7.1902 0.8443 16 7 3.3490 -7.1238 -0.5842 17 6 3.5772 -8.1990 -1.4010 18 1 3.9180 -8.0447 -2.4141 19 6 3.3704 -9.4871 -0.9269 20 7 2.8094 -9.6733 0.2490 21 14 3.8817 -10.9563 -1.9611 22 1 2.7185 -11.4343 -2.7509 23 1 4.9752 -10.5564 -2.8827 24 1 4.3576 -12.0461 -1.0717 25 6 3.4110 -5.7079 -0.9901 26 1 -0.3634 0.0036 1.0276 27 1 -0.3633 0.8881 -0.5170 28 1 -0.3633 -0.8918 -0.5107 29 1 1.9868 2.1059 -0.0004 30 1 4.5664 -1.2860 -0.0065 31 1 4.8029 -2.9866 -0.5229 32 1 4.3321 -2.3292 1.0629 33 1 4.7931 -4.0417 0.9106 34 1 1.9812 -5.6755 2.0325 35 1 3.7324 -5.3691 1.8023 36 1 2.0827 -7.7510 0.9787 37 1 3.8155 -7.6702 1.3966 38 1 2.6613 -10.5735 0.5787 39 1 4.4358 -5.3411 -0.9312 40 1 3.0209 -5.5854 -2.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033655163.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:10 Heat of formation + Delta-G solvation = 58.045954 kcal Electronic energy + Delta-G solvation = -21707.004963 eV Core-core repulsion = 18524.196434 eV Total energy + Delta-G solvation = -3182.808529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.34880 -39.23341 -37.08789 -34.80644 -32.45883 -32.22607 -30.14609 -28.95260 -27.45318 -26.91438 -26.33110 -24.47406 -22.58677 -20.48204 -20.06584 -19.45325 -18.80068 -17.70921 -16.89592 -16.42195 -15.45981 -15.17527 -14.59226 -14.22098 -14.10952 -14.01116 -13.53575 -13.32734 -12.89764 -12.68640 -12.59323 -12.42612 -12.31972 -12.11191 -11.76407 -11.57620 -11.27029 -10.89116 -10.79676 -10.72341 -10.20154 -10.05487 -9.77105 -9.69843 -9.42408 -8.69380 -8.60469 -8.36057 -8.18488 -6.79323 -5.66550 -3.03649 1.77913 2.33493 3.05311 3.37070 3.42933 3.48092 3.50196 3.72671 4.53795 4.75382 4.83833 4.99528 5.17768 5.29325 5.35591 5.42583 5.50322 5.58274 5.69090 5.74140 5.76805 5.80646 5.86980 5.93593 6.06552 6.25108 6.29794 6.38878 6.57831 6.65781 6.73240 6.79718 6.82402 7.10803 7.31362 7.49595 7.68950 7.78525 7.87602 8.29857 8.61188 9.23442 9.84565 10.50145 11.42423 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039124 B = 0.003713 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.509083 B = 7539.622963 C = 7732.985262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.110 4.110 3 C -0.032 4.032 4 N -0.554 5.554 5 H 0.415 0.585 6 C 0.026 3.974 7 C -0.220 4.220 8 C 0.585 3.415 9 O -0.544 6.544 10 N -0.600 5.600 11 C 0.065 3.935 12 C 0.126 3.874 13 H 0.107 0.893 14 C -0.151 4.151 15 C 0.172 3.828 16 N -0.602 5.602 17 C -0.229 4.229 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.918 5.918 21 Si 0.912 3.088 22 H -0.289 1.289 23 H -0.281 1.281 24 H -0.290 1.290 25 C 0.131 3.869 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.166 0.834 30 H 0.191 0.809 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.029 0.971 38 H 0.252 0.748 39 H 0.022 0.978 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.725 22.188 2.030 22.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.159 4.159 4 N -0.148 5.148 5 H 0.251 0.749 6 C -0.109 4.109 7 C -0.231 4.231 8 C 0.375 3.625 9 O -0.423 6.423 10 N -0.332 5.332 11 C -0.078 4.078 12 C 0.023 3.977 13 H 0.125 0.875 14 C -0.190 4.190 15 C 0.047 3.953 16 N -0.328 5.328 17 C -0.358 4.358 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.566 5.566 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.207 1.207 24 H -0.217 1.217 25 C 0.004 3.996 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.183 0.817 30 H 0.207 0.793 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.039 0.961 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.173 21.879 1.979 22.197 hybrid contribution 0.859 -0.527 -0.443 1.101 sum 4.032 21.352 1.537 21.784 Atomic orbital electron populations 1.20208 0.89423 1.02706 1.01861 1.20577 0.95640 0.90406 1.05034 1.21553 0.82648 0.99056 1.12637 1.41589 1.08123 1.06885 1.58246 0.74858 1.23110 0.99664 0.83571 1.04552 1.20443 0.92664 0.92979 1.16977 1.17438 0.85094 0.83904 0.76052 1.90724 1.17336 1.83383 1.50848 1.47614 1.08153 1.06477 1.70967 1.22235 0.83103 1.02014 1.00496 1.22474 1.00910 0.77459 0.96885 0.87498 1.23196 1.00434 0.98828 0.96576 1.21229 1.00712 0.89452 0.83903 1.44399 1.82627 0.99332 1.06467 1.19047 1.37978 0.83939 0.94793 0.90450 1.24816 1.00844 0.97361 0.97357 1.69953 1.47284 1.20279 1.19040 0.86107 0.78140 0.82520 0.79030 1.21601 1.20666 1.21659 1.21814 0.95748 0.86223 0.95849 0.91979 0.92540 0.90019 0.81676 0.79285 0.92513 0.90659 0.90198 0.91866 0.92355 0.91598 0.95238 0.93750 0.96093 0.94105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.04 36.01 0.36 -0.67 16 2 C -0.11 -1.39 6.35 -102.53 -0.65 -2.04 16 3 C -0.03 -0.29 11.82 -16.82 -0.20 -0.49 16 4 N -0.55 -4.14 5.90 -12.85 -0.08 -4.22 16 5 H 0.42 1.51 8.96 -40.82 -0.37 1.14 16 6 C 0.03 0.26 9.85 -16.85 -0.17 0.09 16 7 C -0.22 -3.06 6.12 -103.35 -0.63 -3.69 16 8 C 0.58 10.15 7.66 -12.59 -0.10 10.06 16 9 O -0.54 -11.37 14.69 5.26 0.08 -11.29 16 10 N -0.60 -9.73 2.91 -172.67 -0.50 -10.23 16 11 C 0.06 0.75 7.26 59.85 0.43 1.19 16 12 C 0.13 2.48 3.44 -65.67 -0.23 2.25 16 13 H 0.11 2.37 7.04 -51.93 -0.37 2.00 16 14 C -0.15 -2.97 6.49 -24.90 -0.16 -3.13 16 15 C 0.17 4.26 5.46 -3.07 -0.02 4.25 16 16 N -0.60 -15.71 3.39 -169.94 -0.58 -16.29 16 17 C -0.23 -6.50 10.26 -15.06 -0.15 -6.66 16 18 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 19 C -0.01 -0.21 5.45 -17.43 -0.09 -0.30 16 20 N -0.92 -27.32 10.47 55.49 0.58 -26.74 16 21 Si 0.91 22.31 29.56 -169.99 -5.02 17.29 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 C 0.13 2.81 6.79 -2.41 -0.02 2.79 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.08 1.21 6.76 -51.93 -0.35 0.86 16 29 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 30 H 0.19 1.37 4.41 -52.49 -0.23 1.14 16 31 H 0.06 0.57 7.42 -51.93 -0.39 0.18 16 32 H 0.08 0.69 5.29 -51.93 -0.27 0.42 16 33 H 0.08 0.97 6.36 -51.93 -0.33 0.64 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.03 6.48 -51.93 -0.34 0.69 16 36 H 0.07 1.83 6.86 -51.93 -0.36 1.48 16 37 H 0.03 0.78 7.99 -51.93 -0.42 0.37 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.02 0.43 6.95 -51.93 -0.36 0.07 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 316.52 15.07 4.77 4.77 Total: -1.00 -35.11 316.52 -7.80 -42.91 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.43 Total: 0.15 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -1.62 Total: 3.64 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: -0.57 Total: -57.47 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.08 Total: -11.29 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.11 -7.80 -42.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033655163.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.959 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds