Wall clock time and date at job start Mon Mar 30 2020 02:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34485 * 126.83176 * 2 1 4 4 N 1.36454 * 108.85429 * 180.26106 * 3 2 1 5 5 H 0.96998 * 124.84571 * 179.73278 * 4 3 2 6 6 C 1.34650 * 110.29632 * 359.71143 * 4 3 2 7 7 C 1.36764 * 108.40264 * 359.97438 * 6 4 3 8 8 C 1.47262 * 126.94914 * 179.97438 * 7 6 4 9 9 O 1.21620 * 120.00372 * 186.99732 * 8 7 6 10 10 N 1.34779 * 119.99578 * 7.00932 * 8 7 6 11 11 C 1.46497 * 120.00027 * 5.59817 * 10 8 7 12 12 C 1.46500 * 119.99994 * 185.60390 * 10 8 7 13 13 H 1.09002 * 110.88507 * 3.87901 * 12 10 8 14 14 C 1.55152 * 111.00739 * 239.99551 * 12 10 8 15 15 C 1.54319 * 102.94395 * 206.38418 * 14 12 10 16 16 N 1.47025 * 107.26978 * 22.19723 * 15 14 12 17 17 C 1.36943 * 125.64605 * 181.02495 * 16 15 14 18 18 H 1.07998 * 119.99820 * 186.07584 * 17 16 15 19 19 C 1.38810 * 120.00031 * 6.07319 * 17 16 15 20 20 N 1.31612 * 120.00055 * 7.90674 * 19 17 16 21 21 Si 1.86803 * 119.99785 * 187.63502 * 19 17 16 22 22 H 1.48500 * 109.46710 * 265.29032 * 21 19 17 23 23 H 1.48496 * 109.47091 * 25.28831 * 21 19 17 24 24 H 1.48496 * 109.47300 * 145.29212 * 21 19 17 25 25 C 1.47422 * 108.70275 * 1.28031 * 16 15 14 26 26 H 1.09000 * 109.47310 * 270.20211 * 1 2 3 27 27 H 1.08996 * 109.46774 * 30.20755 * 1 2 3 28 28 H 1.08998 * 109.46723 * 150.20443 * 1 2 3 29 29 H 1.08002 * 125.57327 * 359.97438 * 3 2 1 30 30 H 1.08001 * 125.80298 * 180.02562 * 6 4 3 31 31 H 1.08996 * 109.47508 * 275.74743 * 11 10 8 32 32 H 1.09005 * 109.46931 * 35.74986 * 11 10 8 33 33 H 1.09002 * 109.47046 * 155.74138 * 11 10 8 34 34 H 1.08996 * 110.71959 * 88.02220 * 14 12 10 35 35 H 1.09000 * 110.87122 * 324.81957 * 14 12 10 36 36 H 1.08992 * 109.88569 * 262.77669 * 15 14 12 37 37 H 1.09004 * 110.01258 * 141.68163 * 15 14 12 38 38 H 0.97000 * 120.00260 * 179.72465 * 20 19 17 39 39 H 1.08998 * 110.36077 * 94.49001 * 25 16 15 40 40 H 1.09000 * 110.36708 * 216.80516 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6112 0.6553 -0.0059 5 1 4.3840 1.2414 -0.0108 6 6 3.6657 -0.6901 -0.0034 7 6 2.3865 -1.1740 0.0048 8 6 1.9750 -2.5880 0.0096 9 8 0.8006 -2.8800 -0.1114 10 7 2.8999 -3.5585 0.1483 11 6 4.2964 -3.2065 0.4168 12 6 2.5088 -4.9654 0.0303 13 1 1.4558 -5.0549 -0.2367 14 6 2.8188 -5.7404 1.3381 15 6 3.0075 -7.1902 0.8443 16 7 3.3490 -7.1238 -0.5842 17 6 3.5772 -8.1990 -1.4010 18 1 3.9180 -8.0447 -2.4141 19 6 3.3704 -9.4871 -0.9269 20 7 2.8094 -9.6733 0.2490 21 14 3.8817 -10.9563 -1.9611 22 1 2.7185 -11.4343 -2.7509 23 1 4.9752 -10.5564 -2.8827 24 1 4.3576 -12.0461 -1.0717 25 6 3.4110 -5.7079 -0.9901 26 1 -0.3634 0.0036 1.0276 27 1 -0.3633 0.8881 -0.5170 28 1 -0.3633 -0.8918 -0.5107 29 1 1.9868 2.1059 -0.0004 30 1 4.5664 -1.2860 -0.0065 31 1 4.8029 -2.9866 -0.5229 32 1 4.3321 -2.3292 1.0629 33 1 4.7931 -4.0417 0.9106 34 1 1.9812 -5.6755 2.0325 35 1 3.7324 -5.3691 1.8023 36 1 2.0827 -7.7510 0.9787 37 1 3.8155 -7.6702 1.3966 38 1 2.6613 -10.5735 0.5787 39 1 4.4358 -5.3411 -0.9312 40 1 3.0209 -5.5854 -2.0004 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033655163.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:09 Heat of formation + Delta-G solvation = 33.654756 kcal Electronic energy + Delta-G solvation = -21708.062644 eV Core-core repulsion = 18524.196434 eV Total energy + Delta-G solvation = -3183.866211 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.18981 -40.55955 -38.75435 -36.29476 -34.15169 -33.28906 -31.56450 -30.57114 -28.85439 -28.18891 -27.23396 -26.42237 -23.82079 -22.04346 -21.48546 -20.81184 -19.71058 -18.92851 -18.60447 -17.73741 -16.82580 -16.59609 -16.29989 -15.83645 -15.15336 -15.07151 -14.86650 -14.50200 -14.22691 -14.04384 -13.88666 -13.78299 -13.64909 -13.55678 -13.29850 -12.86853 -12.73099 -12.53270 -12.32237 -12.18471 -12.05567 -12.01858 -11.79496 -11.48980 -10.79453 -10.73508 -9.71330 -9.41742 -9.11911 -8.89835 -7.83294 -5.23742 0.82808 1.46788 1.48851 1.53849 1.58358 2.00063 2.49946 2.54200 2.58633 3.32490 3.67579 3.78199 3.95571 4.02106 4.09496 4.21768 4.27229 4.30840 4.50325 4.56886 4.63353 4.65328 4.73764 4.81585 4.89819 4.92374 4.95722 5.01851 5.16487 5.18112 5.37329 5.40925 5.58074 5.65643 5.75017 5.88061 6.01886 6.19629 6.57672 6.77283 7.07393 7.35035 7.74327 8.38967 9.24357 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039124 B = 0.003713 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.509083 B = 7539.622963 C = 7732.985262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.154 4.154 3 C -0.006 4.006 4 N -0.532 5.532 5 H 0.439 0.561 6 C 0.054 3.946 7 C -0.267 4.267 8 C 0.576 3.424 9 O -0.598 6.598 10 N -0.599 5.599 11 C 0.055 3.945 12 C 0.141 3.859 13 H 0.071 0.929 14 C -0.132 4.132 15 C 0.181 3.819 16 N -0.623 5.623 17 C -0.246 4.246 18 H 0.083 0.917 19 C -0.065 4.065 20 N -0.949 5.949 21 Si 0.981 3.019 22 H -0.289 1.289 23 H -0.266 1.266 24 H -0.292 1.292 25 C 0.134 3.866 26 H 0.057 0.943 27 H 0.081 0.919 28 H 0.042 0.958 29 H 0.203 0.797 30 H 0.220 0.780 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.025 0.975 37 H 0.006 0.994 38 H 0.248 0.752 39 H 0.050 0.950 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.535 25.194 1.691 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.160 4.160 3 C -0.134 4.134 4 N -0.128 5.128 5 H 0.280 0.720 6 C -0.083 4.083 7 C -0.278 4.278 8 C 0.369 3.631 9 O -0.481 6.481 10 N -0.330 5.330 11 C -0.086 4.086 12 C 0.036 3.964 13 H 0.089 0.911 14 C -0.171 4.171 15 C 0.056 3.944 16 N -0.350 5.350 17 C -0.375 4.375 18 H 0.101 0.899 19 C -0.258 4.258 20 N -0.598 5.598 21 Si 0.809 3.191 22 H -0.216 1.216 23 H -0.190 1.190 24 H -0.218 1.218 25 C 0.008 3.992 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.061 0.939 29 H 0.219 0.781 30 H 0.236 0.764 31 H 0.100 0.900 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.043 0.957 37 H 0.024 0.976 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 6.048 24.962 1.631 25.736 hybrid contribution 0.000 -1.343 -0.354 1.389 sum 6.048 23.619 1.277 24.415 Atomic orbital electron populations 1.20109 0.90274 1.01980 1.01427 1.20800 0.95886 0.91472 1.07893 1.21967 0.82492 0.99628 1.09359 1.41636 1.08681 1.06475 1.56015 0.71996 1.23347 0.98841 0.84568 1.01584 1.20311 0.95078 0.91135 1.21237 1.18099 0.84469 0.85532 0.74977 1.90691 1.19654 1.84327 1.53385 1.47596 1.10129 1.04471 1.70800 1.22615 0.80225 1.03273 1.02523 1.21931 0.98641 0.79901 0.95971 0.91092 1.23006 1.02033 0.95422 0.96667 1.20956 0.97712 0.92054 0.83690 1.44679 1.82597 1.00859 1.06875 1.19460 1.37616 0.85021 0.95411 0.89879 1.25708 1.01202 1.00175 0.98714 1.70184 1.48457 1.20392 1.20733 0.85027 0.77926 0.78657 0.77487 1.21564 1.19010 1.21816 1.21915 0.97328 0.84245 0.95701 0.92384 0.90019 0.93856 0.78056 0.76427 0.89988 0.87599 0.90283 0.91541 0.89279 0.95705 0.97557 0.94304 0.93251 0.95081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.99 10.04 71.24 0.72 -1.28 16 2 C -0.15 -3.67 6.35 -18.51 -0.12 -3.78 16 3 C -0.01 -0.09 11.82 83.11 0.98 0.90 16 4 N -0.53 -5.21 5.90 -194.56 -1.15 -6.35 16 5 H 0.44 0.50 8.96 -92.71 -0.83 -0.33 16 6 C 0.05 0.83 9.85 83.92 0.83 1.65 16 7 C -0.27 -7.00 6.12 -19.04 -0.12 -7.12 16 8 C 0.58 20.19 7.66 86.62 0.66 20.86 16 9 O -0.60 -26.58 14.69 -4.10 -0.06 -26.64 16 10 N -0.60 -18.87 2.91 -818.47 -2.38 -21.25 16 11 C 0.05 1.08 7.26 127.77 0.93 2.00 16 12 C 0.14 5.62 3.44 46.46 0.16 5.78 16 13 H 0.07 3.35 7.04 -2.39 -0.02 3.33 16 14 C -0.13 -5.24 6.49 31.78 0.21 -5.03 16 15 C 0.18 9.32 5.46 86.73 0.47 9.80 16 16 N -0.62 -33.26 3.39 -691.57 -2.35 -35.61 16 17 C -0.25 -14.19 10.26 84.03 0.86 -13.33 16 18 H 0.08 4.56 7.84 -2.91 -0.02 4.54 16 19 C -0.06 -3.77 5.45 84.86 0.46 -3.31 16 20 N -0.95 -58.50 10.47 21.65 0.23 -58.27 16 21 Si 0.98 46.49 29.56 68.60 2.03 48.52 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 25 C 0.13 5.76 6.79 86.93 0.59 6.35 16 26 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.38 6.76 -2.39 -0.02 1.37 16 29 H 0.20 1.28 8.06 -2.91 -0.02 1.26 16 30 H 0.22 1.90 4.41 -2.91 -0.01 1.89 16 31 H 0.08 1.24 7.42 -2.39 -0.02 1.23 16 32 H 0.11 1.45 5.29 -2.38 -0.01 1.44 16 33 H 0.08 1.62 6.36 -2.39 -0.02 1.60 16 34 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.09 2.98 6.48 -2.39 -0.02 2.97 16 36 H 0.02 1.46 6.86 -2.39 -0.02 1.45 16 37 H 0.01 0.34 7.99 -2.38 -0.02 0.33 16 38 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 39 H 0.05 1.87 6.95 -2.39 -0.02 1.86 16 40 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -82.64 316.52 3.19 -79.45 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: 0.24 Total: 6.67 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 6.63 Total: 13.49 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -5.65 Total: -121.48 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.06 Total: -26.64 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -82.64 3.19 -79.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033655163.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.107 kcal (2) G-P(sol) polarization free energy of solvation -82.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds