Wall clock time and date at job start Mon Mar 30 2020 02:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34489 * 126.83249 * 2 1 4 4 N 1.36456 * 108.85729 * 179.87320 * 3 2 1 5 5 H 0.96993 * 124.84942 * 180.16199 * 4 3 2 6 6 C 1.34664 * 110.29373 * 0.40931 * 4 3 2 7 7 C 1.36768 * 108.39713 * 359.74985 * 6 4 3 8 8 C 1.47260 * 126.94027 * 180.02562 * 7 6 4 9 9 O 1.21630 * 119.99992 * 143.20716 * 8 7 6 10 10 N 1.34782 * 120.00084 * 323.21485 * 8 7 6 11 11 C 1.46495 * 120.00107 * 4.51062 * 10 8 7 12 12 C 1.46501 * 119.99595 * 184.50690 * 10 8 7 13 13 H 1.08998 * 110.64405 * 1.68946 * 12 10 8 14 14 C 1.55158 * 110.71672 * 125.02448 * 12 10 8 15 15 C 1.54914 * 101.58235 * 153.86221 * 14 12 10 16 16 N 1.47419 * 104.83041 * 322.99129 * 15 14 12 17 17 C 1.36937 * 125.64736 * 204.16553 * 16 15 14 18 18 H 1.08001 * 120.00362 * 179.97438 * 17 16 15 19 19 C 1.38812 * 120.00155 * 359.95528 * 17 16 15 20 20 N 1.31618 * 119.99828 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00347 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47085 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47156 * 119.99816 * 21 19 17 24 24 H 1.48500 * 109.47086 * 240.00218 * 21 19 17 25 25 C 1.47024 * 108.70806 * 24.12633 * 16 15 14 26 26 H 1.09007 * 109.47177 * 269.68811 * 1 2 3 27 27 H 1.09004 * 109.47347 * 149.68858 * 1 2 3 28 28 H 1.09001 * 109.47315 * 29.68424 * 1 2 3 29 29 H 1.07996 * 125.57405 * 359.97438 * 3 2 1 30 30 H 1.08000 * 125.79885 * 179.79466 * 6 4 3 31 31 H 1.08993 * 109.47375 * 84.72624 * 11 10 8 32 32 H 1.08994 * 109.47131 * 204.73655 * 11 10 8 33 33 H 1.09003 * 109.46645 * 324.72975 * 11 10 8 34 34 H 1.09000 * 111.00773 * 271.93984 * 14 12 10 35 35 H 1.09000 * 111.00485 * 35.78965 * 14 12 10 36 36 H 1.08997 * 110.36801 * 204.15182 * 15 14 12 37 37 H 1.08997 * 110.45619 * 81.87451 * 15 14 12 38 38 H 0.97002 * 120.00283 * 179.97438 * 20 19 17 39 39 H 1.08996 * 109.88555 * 239.52358 * 25 16 15 40 40 H 1.08998 * 109.88523 * 118.35316 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 0.0029 5 1 4.3839 1.2414 0.0057 6 6 3.6656 -0.6902 -0.0043 7 6 2.3864 -1.1740 -0.0063 8 6 1.9749 -2.5879 -0.0131 9 8 0.9952 -2.9393 0.6162 10 7 2.6841 -3.4928 -0.7167 11 6 3.9191 -3.0896 -1.3936 12 6 2.2198 -4.8795 -0.8043 13 1 1.2764 -5.0032 -0.2726 14 6 2.0813 -5.3194 -2.2857 15 6 2.2718 -6.8527 -2.1740 16 7 3.2960 -7.0305 -1.1287 17 6 4.1195 -8.1164 -0.9947 18 1 4.8408 -8.1514 -0.1917 19 6 4.0269 -9.1725 -1.8909 20 7 3.1473 -9.1303 -2.8691 21 14 5.1497 -10.6541 -1.7078 22 1 6.0405 -10.4582 -0.5359 23 1 4.3290 -11.8752 -1.5064 24 1 5.9717 -10.8069 -2.9350 25 6 3.2876 -5.8486 -0.2544 26 1 -0.3634 -0.0056 1.0277 27 1 -0.3634 -0.8872 -0.5187 28 1 -0.3634 0.8928 -0.5089 29 1 1.9867 2.1059 -0.0004 30 1 4.5664 -1.2859 -0.0071 31 1 4.7503 -3.1341 -0.6900 32 1 4.1128 -3.7637 -2.2280 33 1 3.8130 -2.0709 -1.7667 34 1 1.0927 -5.0758 -2.6749 35 1 2.8625 -4.8725 -2.9007 36 1 2.6221 -7.2616 -3.1217 37 1 1.3391 -7.3318 -1.8766 38 1 3.0828 -9.8680 -3.4956 39 1 4.2664 -5.3691 -0.2697 40 1 3.0323 -6.1423 0.7638 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033655164.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:13 Heat of formation + Delta-G solvation = 48.379921 kcal Electronic energy + Delta-G solvation = -21733.913573 eV Core-core repulsion = 18550.685894 eV Total energy + Delta-G solvation = -3183.227680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31319 -39.25599 -37.08799 -34.67578 -32.53343 -32.18071 -30.09077 -28.97810 -27.39763 -26.73993 -26.36490 -24.52231 -22.61884 -20.39098 -20.12294 -19.31289 -18.67683 -17.86767 -16.91257 -16.53114 -15.44917 -15.03842 -14.64347 -14.32112 -14.07160 -13.94274 -13.56179 -13.36875 -12.85671 -12.78146 -12.73506 -12.41252 -12.24813 -11.89650 -11.77097 -11.46417 -11.39399 -11.01072 -10.80354 -10.76690 -10.35413 -10.07202 -9.78169 -9.54554 -9.47648 -8.66183 -8.63693 -8.35130 -8.18289 -6.81467 -5.63410 -3.05421 1.86479 2.34070 3.06014 3.30347 3.41035 3.46429 3.49055 3.60183 4.51617 4.76759 4.85537 4.98561 5.27217 5.35017 5.40147 5.45066 5.50062 5.61317 5.70622 5.77407 5.81275 5.81932 5.84361 5.99625 6.05588 6.16316 6.30300 6.45835 6.63164 6.66975 6.69785 6.78377 6.82134 7.12889 7.31508 7.53897 7.64841 7.78738 7.87959 8.37082 8.58221 9.23636 9.84332 10.49157 11.40345 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039317 B = 0.003787 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.983741 B = 7391.560984 C = 7704.191570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.116 4.116 3 C -0.027 4.027 4 N -0.554 5.554 5 H 0.416 0.584 6 C 0.039 3.961 7 C -0.215 4.215 8 C 0.586 3.414 9 O -0.545 6.545 10 N -0.598 5.598 11 C 0.074 3.926 12 C 0.128 3.872 13 H 0.103 0.897 14 C -0.153 4.153 15 C 0.153 3.847 16 N -0.603 5.603 17 C -0.220 4.220 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.130 3.870 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.167 0.833 30 H 0.175 0.825 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.015 0.985 38 H 0.251 0.749 39 H 0.026 0.974 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 21.547 2.215 21.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.123 4.123 3 C -0.155 4.155 4 N -0.148 5.148 5 H 0.252 0.748 6 C -0.096 4.096 7 C -0.226 4.226 8 C 0.375 3.625 9 O -0.423 6.423 10 N -0.330 5.330 11 C -0.070 4.070 12 C 0.025 3.975 13 H 0.121 0.879 14 C -0.192 4.192 15 C 0.028 3.972 16 N -0.330 5.330 17 C -0.349 4.349 18 H 0.096 0.904 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.745 3.255 22 H -0.206 1.206 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.003 3.997 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.184 0.816 30 H 0.192 0.808 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.033 0.967 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 0.934 21.243 2.460 21.406 hybrid contribution 1.098 -0.524 0.123 1.223 sum 2.032 20.719 2.583 20.978 Atomic orbital electron populations 1.20108 0.89509 1.01905 1.02053 1.20515 0.95480 0.90419 1.05844 1.21509 0.82543 0.99004 1.12414 1.41487 1.08144 1.06694 1.58502 0.74815 1.22163 0.98771 0.83554 1.05158 1.20393 0.92828 0.92912 1.16453 1.17479 0.82534 0.84077 0.78426 1.90745 1.27771 1.80600 1.43181 1.47700 1.24806 1.09699 1.50808 1.21942 0.86026 1.01130 0.97865 1.22220 0.98686 0.78646 0.97974 0.87906 1.23397 1.00541 1.00747 0.94511 1.21931 0.91153 0.87796 0.96301 1.44455 1.41244 1.16985 1.30268 1.19123 1.11517 0.94015 1.10219 0.90448 1.24786 0.99368 0.98577 0.97956 1.69800 1.37298 1.31891 1.18088 0.85994 0.79694 0.82580 0.77206 1.20560 1.21750 1.21775 1.21522 0.95626 0.88505 0.94037 0.91558 0.91435 0.92350 0.81605 0.80783 0.93016 0.90127 0.91134 0.92071 0.91685 0.87353 0.96717 0.93776 0.95565 0.95760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.91 10.12 36.00 0.36 -0.55 16 2 C -0.12 -1.43 6.35 -102.54 -0.65 -2.09 16 3 C -0.03 -0.24 11.82 -16.82 -0.20 -0.44 16 4 N -0.55 -4.18 5.90 -12.84 -0.08 -4.25 16 5 H 0.42 1.57 8.96 -40.82 -0.37 1.21 16 6 C 0.04 0.39 9.63 -16.84 -0.16 0.23 16 7 C -0.22 -2.99 5.55 -103.35 -0.57 -3.57 16 8 C 0.59 10.18 7.55 -12.59 -0.10 10.09 16 9 O -0.54 -11.39 16.19 5.25 0.09 -11.30 16 10 N -0.60 -9.95 2.88 -173.17 -0.50 -10.45 16 11 C 0.07 0.95 7.78 59.84 0.47 1.42 16 12 C 0.13 2.51 3.36 -66.09 -0.22 2.29 16 13 H 0.10 2.19 7.00 -51.93 -0.36 1.83 16 14 C -0.15 -3.02 6.59 -24.58 -0.16 -3.18 16 15 C 0.15 3.79 5.89 -2.53 -0.01 3.78 16 16 N -0.60 -15.74 3.39 -170.07 -0.58 -16.31 16 17 C -0.22 -6.20 10.27 -15.06 -0.15 -6.36 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 20 N -0.92 -26.94 10.09 55.49 0.56 -26.38 16 21 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 C 0.13 2.87 6.88 -3.06 -0.02 2.85 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.18 1.38 6.21 -52.49 -0.33 1.06 16 31 H 0.05 0.59 7.27 -51.93 -0.38 0.21 16 32 H 0.08 1.13 6.13 -51.93 -0.32 0.81 16 33 H 0.07 0.76 5.88 -51.93 -0.31 0.45 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.22 6.14 -51.93 -0.32 0.90 16 36 H 0.11 2.96 5.87 -51.93 -0.31 2.66 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.03 0.56 7.06 -51.93 -0.37 0.19 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 320.16 15.07 4.82 4.82 Total: -1.00 -34.41 320.16 -7.78 -42.18 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.55 Total: 0.53 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -1.52 Total: 4.05 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.59 Total: -57.40 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.41 -7.78 -42.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033655164.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.564 kcal (2) G-P(sol) polarization free energy of solvation -34.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds