Wall clock time and date at job start Mon Mar 30 2020 02:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34489 * 126.83249 * 2 1 4 4 N 1.36456 * 108.85729 * 179.87320 * 3 2 1 5 5 H 0.96993 * 124.84942 * 180.16199 * 4 3 2 6 6 C 1.34664 * 110.29373 * 0.40931 * 4 3 2 7 7 C 1.36768 * 108.39713 * 359.74985 * 6 4 3 8 8 C 1.47260 * 126.94027 * 180.02562 * 7 6 4 9 9 O 1.21630 * 119.99992 * 143.20716 * 8 7 6 10 10 N 1.34782 * 120.00084 * 323.21485 * 8 7 6 11 11 C 1.46495 * 120.00107 * 4.51062 * 10 8 7 12 12 C 1.46501 * 119.99595 * 184.50690 * 10 8 7 13 13 H 1.08998 * 110.64405 * 1.68946 * 12 10 8 14 14 C 1.55158 * 110.71672 * 125.02448 * 12 10 8 15 15 C 1.54914 * 101.58235 * 153.86221 * 14 12 10 16 16 N 1.47419 * 104.83041 * 322.99129 * 15 14 12 17 17 C 1.36937 * 125.64736 * 204.16553 * 16 15 14 18 18 H 1.08001 * 120.00362 * 179.97438 * 17 16 15 19 19 C 1.38812 * 120.00155 * 359.95528 * 17 16 15 20 20 N 1.31618 * 119.99828 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00347 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47085 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47156 * 119.99816 * 21 19 17 24 24 H 1.48500 * 109.47086 * 240.00218 * 21 19 17 25 25 C 1.47024 * 108.70806 * 24.12633 * 16 15 14 26 26 H 1.09007 * 109.47177 * 269.68811 * 1 2 3 27 27 H 1.09004 * 109.47347 * 149.68858 * 1 2 3 28 28 H 1.09001 * 109.47315 * 29.68424 * 1 2 3 29 29 H 1.07996 * 125.57405 * 359.97438 * 3 2 1 30 30 H 1.08000 * 125.79885 * 179.79466 * 6 4 3 31 31 H 1.08993 * 109.47375 * 84.72624 * 11 10 8 32 32 H 1.08994 * 109.47131 * 204.73655 * 11 10 8 33 33 H 1.09003 * 109.46645 * 324.72975 * 11 10 8 34 34 H 1.09000 * 111.00773 * 271.93984 * 14 12 10 35 35 H 1.09000 * 111.00485 * 35.78965 * 14 12 10 36 36 H 1.08997 * 110.36801 * 204.15182 * 15 14 12 37 37 H 1.08997 * 110.45619 * 81.87451 * 15 14 12 38 38 H 0.97002 * 120.00283 * 179.97438 * 20 19 17 39 39 H 1.08996 * 109.88555 * 239.52358 * 25 16 15 40 40 H 1.08998 * 109.88523 * 118.35316 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6111 0.6553 0.0029 5 1 4.3839 1.2414 0.0057 6 6 3.6656 -0.6902 -0.0043 7 6 2.3864 -1.1740 -0.0063 8 6 1.9749 -2.5879 -0.0131 9 8 0.9952 -2.9393 0.6162 10 7 2.6841 -3.4928 -0.7167 11 6 3.9191 -3.0896 -1.3936 12 6 2.2198 -4.8795 -0.8043 13 1 1.2764 -5.0032 -0.2726 14 6 2.0813 -5.3194 -2.2857 15 6 2.2718 -6.8527 -2.1740 16 7 3.2960 -7.0305 -1.1287 17 6 4.1195 -8.1164 -0.9947 18 1 4.8408 -8.1514 -0.1917 19 6 4.0269 -9.1725 -1.8909 20 7 3.1473 -9.1303 -2.8691 21 14 5.1497 -10.6541 -1.7078 22 1 6.0405 -10.4582 -0.5359 23 1 4.3290 -11.8752 -1.5064 24 1 5.9717 -10.8069 -2.9350 25 6 3.2876 -5.8486 -0.2544 26 1 -0.3634 -0.0056 1.0277 27 1 -0.3634 -0.8872 -0.5187 28 1 -0.3634 0.8928 -0.5089 29 1 1.9867 2.1059 -0.0004 30 1 4.5664 -1.2859 -0.0071 31 1 4.7503 -3.1341 -0.6900 32 1 4.1128 -3.7637 -2.2280 33 1 3.8130 -2.0709 -1.7667 34 1 1.0927 -5.0758 -2.6749 35 1 2.8625 -4.8725 -2.9007 36 1 2.6221 -7.2616 -3.1217 37 1 1.3391 -7.3318 -1.8766 38 1 3.0828 -9.8680 -3.4956 39 1 4.2664 -5.3691 -0.2697 40 1 3.0323 -6.1423 0.7638 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033655164.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:12 Heat of formation + Delta-G solvation = 25.154896 kcal Electronic energy + Delta-G solvation = -21734.920686 eV Core-core repulsion = 18550.685894 eV Total energy + Delta-G solvation = -3184.234792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.15433 -40.61192 -38.76983 -36.22536 -34.11009 -33.33124 -31.49627 -30.56905 -28.94309 -27.89859 -27.32851 -26.45951 -23.85503 -22.14338 -21.39615 -20.59679 -19.63627 -18.94760 -18.79406 -17.88677 -16.89199 -16.51125 -16.22098 -15.91440 -15.32490 -15.06656 -14.78923 -14.43883 -14.28487 -14.08915 -13.84375 -13.62881 -13.59775 -13.42425 -13.21395 -12.97300 -12.86784 -12.71337 -12.39012 -12.27482 -12.13950 -11.97398 -11.82740 -11.38242 -10.90490 -10.75520 -9.67714 -9.43460 -9.10934 -8.92021 -7.77568 -5.23602 0.91745 1.48076 1.49715 1.53865 1.59933 1.96753 2.35092 2.49631 2.57229 3.32794 3.66903 3.79810 3.91928 4.03071 4.07175 4.24860 4.28951 4.32114 4.49013 4.56929 4.64613 4.67963 4.72947 4.85388 4.91010 4.92883 4.98305 5.04274 5.10269 5.16049 5.32178 5.45569 5.56303 5.63186 5.76826 5.86089 6.02786 6.28060 6.53250 6.77091 7.09003 7.28706 7.74726 8.39193 9.24550 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039317 B = 0.003787 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.983741 B = 7391.560984 C = 7704.191570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.157 4.157 3 C -0.001 4.001 4 N -0.533 5.533 5 H 0.439 0.561 6 C 0.061 3.939 7 C -0.261 4.261 8 C 0.581 3.419 9 O -0.595 6.595 10 N -0.598 5.598 11 C 0.070 3.930 12 C 0.142 3.858 13 H 0.079 0.921 14 C -0.133 4.133 15 C 0.158 3.842 16 N -0.622 5.622 17 C -0.240 4.240 18 H 0.082 0.918 19 C -0.065 4.065 20 N -0.949 5.949 21 Si 0.984 3.016 22 H -0.267 1.267 23 H -0.294 1.294 24 H -0.287 1.287 25 C 0.133 3.867 26 H 0.057 0.943 27 H 0.034 0.966 28 H 0.086 0.914 29 H 0.205 0.795 30 H 0.199 0.801 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.083 0.917 37 H -0.016 1.016 38 H 0.248 0.752 39 H 0.044 0.956 40 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.692 24.380 2.195 24.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.163 4.163 3 C -0.130 4.130 4 N -0.128 5.128 5 H 0.279 0.721 6 C -0.076 4.076 7 C -0.272 4.272 8 C 0.373 3.627 9 O -0.477 6.477 10 N -0.329 5.329 11 C -0.071 4.071 12 C 0.037 3.963 13 H 0.097 0.903 14 C -0.172 4.172 15 C 0.032 3.968 16 N -0.348 5.348 17 C -0.369 4.369 18 H 0.099 0.901 19 C -0.257 4.257 20 N -0.598 5.598 21 Si 0.812 3.188 22 H -0.191 1.191 23 H -0.222 1.222 24 H -0.214 1.214 25 C 0.006 3.994 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.105 0.895 29 H 0.221 0.779 30 H 0.216 0.784 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.002 0.998 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 3.363 24.141 2.440 24.496 hybrid contribution 0.365 -1.329 0.164 1.388 sum 3.728 22.813 2.604 23.262 Atomic orbital electron populations 1.20042 0.90070 1.01680 1.01414 1.20744 0.95830 0.91215 1.08536 1.21961 0.82265 0.99665 1.09077 1.41529 1.08788 1.06159 1.56347 0.72069 1.22361 0.97964 0.84649 1.02665 1.20259 0.95153 0.91087 1.20664 1.18106 0.81670 0.85573 0.77343 1.90706 1.30061 1.81598 1.45361 1.47706 1.26026 1.08059 1.51074 1.22192 0.84824 1.02307 0.97823 1.21756 0.97037 0.80433 0.97072 0.90279 1.23190 1.01936 0.96961 0.95088 1.21706 0.89437 0.90912 0.94726 1.44717 1.41076 1.17739 1.31285 1.19488 1.11952 0.95024 1.10412 0.90061 1.25651 1.00946 1.01345 0.97763 1.70036 1.38668 1.32429 1.18684 0.84936 0.77810 0.78551 0.77543 1.19125 1.22162 1.21371 1.21578 0.97143 0.87879 0.92751 0.92457 0.94637 0.89537 0.77864 0.78420 0.90857 0.91037 0.88423 0.90737 0.89915 0.89902 0.99777 0.94185 0.93832 0.97140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.73 10.12 71.23 0.72 -1.01 16 2 C -0.16 -3.61 6.35 -18.52 -0.12 -3.72 16 3 C 0.00 -0.02 11.82 83.12 0.98 0.97 16 4 N -0.53 -5.44 5.90 -194.55 -1.15 -6.59 16 5 H 0.44 0.82 8.96 -92.71 -0.83 -0.02 16 6 C 0.06 1.00 9.63 83.91 0.81 1.80 16 7 C -0.26 -6.85 5.55 -19.04 -0.11 -6.95 16 8 C 0.58 20.33 7.55 86.61 0.65 20.98 16 9 O -0.60 -26.11 16.19 -4.13 -0.07 -26.18 16 10 N -0.60 -19.52 2.88 -820.02 -2.36 -21.88 16 11 C 0.07 1.63 7.78 127.77 0.99 2.62 16 12 C 0.14 5.67 3.36 46.18 0.15 5.83 16 13 H 0.08 3.55 7.00 -2.39 -0.02 3.54 16 14 C -0.13 -5.30 6.59 31.99 0.21 -5.09 16 15 C 0.16 8.09 5.89 86.86 0.51 8.60 16 16 N -0.62 -33.18 3.39 -691.99 -2.35 -35.52 16 17 C -0.24 -13.68 10.27 84.03 0.86 -12.82 16 18 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 19 C -0.06 -3.68 5.49 84.86 0.47 -3.22 16 20 N -0.95 -56.85 10.09 21.65 0.22 -56.63 16 21 Si 0.98 45.79 29.55 68.60 2.03 47.81 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 24 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 25 C 0.13 5.93 6.88 86.73 0.60 6.52 16 26 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.03 1.01 8.10 -2.39 -0.02 1.00 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.20 1.18 8.06 -2.91 -0.02 1.15 16 30 H 0.20 2.20 6.21 -2.91 -0.02 2.18 16 31 H 0.07 1.40 7.27 -2.39 -0.02 1.39 16 32 H 0.07 1.82 6.13 -2.39 -0.01 1.81 16 33 H 0.10 1.75 5.88 -2.39 -0.01 1.74 16 34 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.08 3.02 6.14 -2.39 -0.01 3.01 16 36 H 0.08 4.71 5.87 -2.39 -0.01 4.69 16 37 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 38 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 39 H 0.04 1.80 7.06 -2.39 -0.02 1.78 16 40 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -78.95 320.16 3.29 -75.66 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.23 Total: 8.80 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 6.74 Total: 14.53 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -5.64 Total: -120.62 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.07 Total: -26.18 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Total: -78.95 3.29 -75.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033655164.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.814 kcal (2) G-P(sol) polarization free energy of solvation -78.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds