Wall clock time and date at job start Mon Mar 30 2020 01:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35454 * 125.56118 * 2 1 4 4 C 1.39839 * 107.85796 * 179.77354 * 3 2 1 5 5 C 1.37872 * 107.08734 * 0.41168 * 4 3 2 6 6 C 1.46678 * 126.23062 * 179.84358 * 5 4 3 7 7 O 1.21693 * 119.99769 * 184.81988 * 6 5 4 8 8 N 1.34777 * 120.00313 * 4.83327 * 6 5 4 9 9 C 1.46499 * 120.00257 * 174.42056 * 8 6 5 10 10 C 1.52998 * 109.47039 * 179.97438 * 9 8 6 11 11 H 1.08997 * 112.96613 * 53.32453 * 10 9 8 12 12 C 1.53945 * 113.76782 * 185.00246 * 10 9 8 13 13 C 1.53946 * 86.29062 * 137.91200 * 12 10 9 14 14 N 1.47581 * 113.77072 * 281.49751 * 10 9 8 15 15 C 1.36929 * 134.49411 * 41.05822 * 14 10 9 16 16 H 1.08006 * 120.00367 * 0.02562 * 15 14 10 17 17 C 1.38814 * 120.00067 * 180.02562 * 15 14 10 18 18 N 1.31619 * 120.00208 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47416 * 59.99687 * 19 17 15 21 21 H 1.48493 * 109.47176 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46815 * 299.99982 * 19 17 15 23 23 N 1.35531 * 125.56360 * 180.02562 * 2 1 3 24 24 C 1.46504 * 125.67737 * 359.97438 * 23 2 1 25 25 H 1.08996 * 109.47559 * 269.96324 * 1 2 3 26 26 H 1.09006 * 109.47168 * 29.96516 * 1 2 3 27 27 H 1.09003 * 109.47054 * 149.96227 * 1 2 3 28 28 H 1.07997 * 126.07263 * 0.04938 * 3 2 1 29 29 H 1.08002 * 126.45117 * 180.29797 * 4 3 2 30 30 H 0.97004 * 119.99823 * 354.41792 * 8 6 5 31 31 H 1.08991 * 109.47205 * 299.99628 * 9 8 6 32 32 H 1.09002 * 109.46868 * 59.99938 * 9 8 6 33 33 H 1.09006 * 113.74245 * 252.25578 * 12 10 9 34 34 H 1.08995 * 113.74228 * 23.45690 * 12 10 9 35 35 H 1.08997 * 113.76883 * 90.69271 * 13 12 10 36 36 H 1.09004 * 113.76740 * 221.97874 * 13 12 10 37 37 H 0.97000 * 120.00175 * 180.02562 * 18 17 15 38 38 H 1.08997 * 109.46711 * 270.08751 * 24 23 2 39 39 H 1.09004 * 109.47341 * 30.08609 * 24 23 2 40 40 H 1.08996 * 109.47047 * 150.08935 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6767 0.0053 5 6 3.6121 -0.7019 -0.0011 6 6 4.7859 -1.5815 -0.0020 7 8 4.6433 -2.7864 -0.0964 8 7 6.0224 -1.0554 0.1021 9 6 7.1859 -1.9373 0.2243 10 6 8.4576 -1.0927 0.3253 11 1 8.4091 -0.3438 1.1158 12 6 9.7543 -1.9224 0.3354 13 6 10.3270 -0.8540 -0.6135 14 7 8.9248 -0.5636 -0.9708 15 6 8.3060 -0.0212 -2.0652 16 1 7.2315 0.0871 -2.0796 17 6 9.0596 0.3895 -3.1562 18 7 10.3690 0.2571 -3.1389 19 14 8.2154 1.1302 -4.6489 20 1 7.4754 2.3522 -4.2436 21 1 9.2347 1.4837 -5.6693 22 1 7.2650 0.1428 -5.2207 23 7 2.2953 -1.1025 -0.0005 24 6 1.8241 -2.4897 -0.0006 25 1 -0.3634 -0.0007 1.0276 26 1 -0.3634 0.8903 -0.5133 27 1 -0.3633 -0.8897 -0.5144 28 1 1.9545 2.1269 0.0008 29 1 4.5024 1.3091 0.0111 30 1 6.1420 -0.0928 0.0960 31 1 7.0845 -2.5504 1.1197 32 1 7.2469 -2.5818 -0.6526 33 1 10.2466 -1.9554 1.3074 34 1 9.6491 -2.9064 -0.1213 35 1 10.8285 -0.0337 -0.1000 36 1 10.9153 -1.2651 -1.4340 37 1 10.8957 0.5445 -3.9011 38 1 1.7062 -2.8334 1.0271 39 1 0.8651 -2.5477 -0.5154 40 1 2.5505 -3.1201 -0.5134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038051425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:55 Heat of formation + Delta-G solvation = 63.497743 kcal Electronic energy + Delta-G solvation = -21522.201084 eV Core-core repulsion = 18339.628962 eV Total energy + Delta-G solvation = -3182.572122 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.36735 -38.94631 -37.76481 -34.24145 -32.73551 -32.15751 -31.75236 -28.42049 -27.82512 -26.46735 -25.99202 -23.34268 -22.45331 -21.55199 -20.09633 -19.34216 -18.88782 -17.64422 -16.54386 -15.79211 -15.61206 -15.18813 -15.13035 -14.43037 -14.08779 -13.78319 -13.57704 -13.30885 -13.29267 -13.05333 -12.89498 -12.80489 -12.09295 -11.92997 -11.84674 -11.77056 -11.40220 -11.08843 -10.98902 -10.70895 -10.54169 -10.01461 -9.74714 -9.67867 -9.36083 -8.77029 -8.68271 -8.63562 -7.94746 -6.87385 -5.73836 -3.06283 1.61118 2.71628 2.75892 3.41691 3.46450 3.47008 3.64666 3.70417 4.46102 4.72671 4.78581 4.94978 5.04409 5.15656 5.18359 5.34635 5.41782 5.48210 5.53598 5.59022 5.62993 5.71590 5.73406 5.93675 6.07451 6.16253 6.23734 6.32896 6.41714 6.63334 6.72269 6.82268 6.94701 7.06392 7.25516 7.26925 7.42616 7.61462 7.90874 8.01055 8.53748 9.07196 9.73897 10.61518 11.42804 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017705 B = 0.005035 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.069640 B = 5559.692088 C = 6594.016001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.032 3.968 3 C -0.205 4.205 4 C -0.138 4.138 5 C -0.046 4.046 6 C 0.585 3.415 7 O -0.562 6.562 8 N -0.700 5.700 9 C 0.126 3.874 10 C 0.125 3.875 11 H 0.051 0.949 12 C -0.155 4.155 13 C 0.159 3.841 14 N -0.602 5.602 15 C -0.219 4.219 16 H 0.078 0.922 17 C -0.006 4.006 18 N -0.920 5.920 19 Si 0.906 3.094 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 N -0.409 5.409 24 C 0.065 3.935 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.405 0.595 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.026 0.974 36 H 0.073 0.927 37 H 0.253 0.747 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.264 -1.603 9.163 17.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.229 4.229 4 C -0.164 4.164 5 C -0.159 4.159 6 C 0.372 3.628 7 O -0.444 6.444 8 N -0.349 5.349 9 C 0.002 3.998 10 C 0.018 3.982 11 H 0.068 0.932 12 C -0.194 4.194 13 C 0.034 3.966 14 N -0.328 5.328 15 C -0.347 4.347 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.568 5.568 19 Si 0.737 3.263 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.212 1.212 23 N -0.083 5.083 24 C -0.077 4.077 25 H 0.090 0.910 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.158 0.842 29 H 0.163 0.837 30 H 0.240 0.760 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.427 -2.710 8.775 17.954 hybrid contribution -0.353 1.089 -0.889 1.449 sum -15.780 -1.621 7.886 17.715 Atomic orbital electron populations 1.20351 0.88000 1.03248 1.02599 1.20505 0.93620 0.85978 1.08354 1.20585 0.92498 0.97619 1.12248 1.21405 0.97963 0.92126 1.04908 1.20122 0.84286 0.93687 1.17839 1.16967 0.82484 0.86688 0.76621 1.90722 1.86464 1.15073 1.52092 1.45624 1.05218 1.11209 1.72897 1.21793 0.83723 0.93019 1.01311 1.22511 0.91763 0.93653 0.90303 0.93219 1.23773 0.96664 0.99554 0.99436 1.22194 0.88291 0.91960 0.94172 1.46063 1.02657 1.72791 1.11285 1.18910 0.90982 1.33381 0.91402 0.90380 1.24739 0.95520 1.01727 0.98267 1.69807 1.03767 1.52419 1.30760 0.86286 0.78176 0.79143 0.82716 1.21144 1.21587 1.21193 1.43709 1.04679 1.06432 1.53443 1.22246 1.01704 0.80109 1.03604 0.90956 0.89991 0.91795 0.84201 0.83681 0.75957 0.92135 0.90769 0.92802 0.90505 0.95572 0.90829 0.93678 0.90917 0.90305 0.87538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.08 36.01 0.36 -0.31 16 2 C 0.03 0.39 6.87 -81.95 -0.56 -0.17 16 3 C -0.21 -2.66 10.71 -39.98 -0.43 -3.09 16 4 C -0.14 -2.03 10.36 -39.12 -0.41 -2.44 16 5 C -0.05 -0.75 6.89 -81.98 -0.56 -1.32 16 6 C 0.58 10.69 7.77 -12.85 -0.10 10.59 16 7 O -0.56 -11.40 14.65 5.20 0.08 -11.32 16 8 N -0.70 -12.45 5.51 -61.62 -0.34 -12.79 16 9 C 0.13 2.31 5.54 -4.04 -0.02 2.29 16 10 C 0.13 2.42 4.33 -66.86 -0.29 2.13 16 11 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 12 C -0.16 -2.84 7.86 -25.81 -0.20 -3.04 16 13 C 0.16 3.65 7.51 -2.97 -0.02 3.63 16 14 N -0.60 -14.73 3.57 -170.74 -0.61 -15.34 16 15 C -0.22 -5.95 10.51 -15.06 -0.16 -6.11 16 16 H 0.08 2.06 7.80 -52.48 -0.41 1.65 16 17 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 18 N -0.92 -27.14 11.39 55.49 0.63 -26.51 16 19 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 N -0.41 -5.76 3.16 -115.62 -0.37 -6.13 16 24 C 0.06 0.74 10.43 59.85 0.62 1.37 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.45 7.00 -51.93 -0.36 0.08 16 28 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 29 H 0.15 1.96 7.45 -52.49 -0.39 1.57 16 30 H 0.41 6.88 7.37 -40.82 -0.30 6.58 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.08 1.39 8.10 -51.93 -0.42 0.96 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 1.88 7.16 -51.93 -0.37 1.51 16 37 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.67 6.97 -51.93 -0.36 0.31 16 40 H 0.11 1.46 6.21 -51.93 -0.32 1.14 16 LS Contribution 333.08 15.07 5.02 5.02 Total: -1.00 -32.89 333.08 -8.36 -41.25 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.88 Total: 5.18 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -1.86 Total: 3.27 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -0.68 Total: -60.77 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.08 Total: -11.32 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.89 -8.36 -41.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038051425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.746 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds