Wall clock time and date at job start Mon Mar 30 2020 01:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35442 * 125.56648 * 2 1 4 4 C 1.39840 * 107.86646 * 179.97438 * 3 2 1 5 5 C 1.37875 * 107.08216 * 359.75357 * 4 3 2 6 6 C 1.46679 * 126.23186 * 180.23376 * 5 4 3 7 7 O 1.21693 * 119.99672 * 185.66329 * 6 5 4 8 8 N 1.34774 * 119.99686 * 5.67021 * 6 5 4 9 9 C 1.46504 * 119.99448 * 185.13478 * 8 6 5 10 10 C 1.53004 * 109.46818 * 179.97438 * 9 8 6 11 11 H 1.09003 * 112.74014 * 303.75945 * 10 9 8 12 12 C 1.53499 * 113.46358 * 172.94131 * 10 9 8 13 13 C 1.53506 * 83.34009 * 219.14977 * 12 10 9 14 14 N 1.47059 * 113.46942 * 74.50545 * 10 9 8 15 15 C 1.36941 * 136.05762 * 321.86326 * 14 10 9 16 16 H 1.07998 * 119.99723 * 0.02562 * 15 14 10 17 17 C 1.38815 * 120.00147 * 179.97438 * 15 14 10 18 18 N 1.31618 * 119.99842 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00100 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47188 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47222 * 119.99810 * 19 17 15 22 22 H 1.48497 * 109.47277 * 240.00711 * 19 17 15 23 23 N 1.35535 * 125.55793 * 179.97438 * 2 1 3 24 24 C 1.46501 * 125.68172 * 0.02562 * 23 2 1 25 25 H 1.09006 * 109.46853 * 270.02739 * 1 2 3 26 26 H 1.08996 * 109.47122 * 30.02349 * 1 2 3 27 27 H 1.08999 * 109.47567 * 150.02934 * 1 2 3 28 28 H 1.07998 * 126.07005 * 359.97438 * 3 2 1 29 29 H 1.08000 * 126.45557 * 180.02562 * 4 3 2 30 30 H 0.96998 * 120.00473 * 5.13200 * 8 6 5 31 31 H 1.09002 * 109.47151 * 299.99662 * 9 8 6 32 32 H 1.09004 * 109.47217 * 59.99932 * 9 8 6 33 33 H 1.08997 * 114.21091 * 332.73333 * 12 10 9 34 34 H 1.09001 * 114.20397 * 105.56908 * 12 10 9 35 35 H 1.08994 * 113.46890 * 271.28590 * 13 12 10 36 36 H 1.08998 * 113.46327 * 140.84937 * 13 12 10 37 37 H 0.96996 * 120.00155 * 179.97438 * 18 17 15 38 38 H 1.08996 * 109.47205 * 85.91736 * 24 23 2 39 39 H 1.08993 * 109.46550 * 325.91218 * 24 23 2 40 40 H 1.08999 * 109.46975 * 205.91238 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1017 0.0000 4 6 3.6270 0.6766 0.0006 5 6 3.6122 -0.7021 0.0066 6 6 4.7859 -1.5817 0.0142 7 8 4.6441 -2.7863 -0.0850 8 7 6.0213 -1.0558 0.1311 9 6 7.1987 -1.9213 0.0258 10 6 8.4661 -1.0806 0.1928 11 1 8.5247 -0.2601 -0.5223 12 6 9.7497 -1.9188 0.2700 13 6 10.1479 -0.8852 1.3327 14 7 8.7151 -0.6661 1.5816 15 6 7.9498 -0.2556 2.6404 16 1 6.8774 -0.1833 2.5355 17 6 8.5523 0.0664 3.8488 18 7 9.8593 -0.0222 3.9767 19 14 7.5083 0.6256 5.2933 20 1 6.0780 0.6400 4.8941 21 1 7.6947 -0.3108 6.4306 22 1 7.9218 1.9915 5.7037 23 7 2.2952 -1.1026 0.0005 24 6 1.8240 -2.4898 0.0006 25 1 -0.3633 0.0005 1.0277 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3634 -0.8902 -0.5134 28 1 1.9546 2.1267 -0.0004 29 1 4.5025 1.3090 0.0011 30 1 6.1309 -0.1044 0.2848 31 1 7.1614 -2.6819 0.8057 32 1 7.2090 -2.4034 -0.9518 33 1 9.6030 -2.9263 0.6593 34 1 10.3586 -1.8880 -0.6336 35 1 10.6554 -0.0129 0.9212 36 1 10.6749 -1.3180 2.1830 37 1 10.2804 0.2032 4.8209 38 1 1.6383 -2.8105 -1.0244 39 1 0.9012 -2.5599 0.5762 40 1 2.5823 -3.1310 0.4501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038051427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:58 Heat of formation + Delta-G solvation = 66.422519 kcal Electronic energy + Delta-G solvation = -21569.358940 eV Core-core repulsion = 18386.913646 eV Total energy + Delta-G solvation = -3182.445294 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.35395 -39.00163 -37.91359 -34.23055 -32.71897 -32.20250 -31.74140 -28.40889 -27.88546 -26.45464 -25.95275 -23.46481 -22.35104 -21.49447 -20.08607 -19.39261 -18.94271 -17.63497 -16.56322 -15.74681 -15.65278 -15.18943 -15.10662 -14.40105 -14.07039 -13.79930 -13.56592 -13.28897 -13.26560 -13.02803 -12.93849 -12.78092 -12.07269 -11.93730 -11.83183 -11.80356 -11.52346 -11.10852 -10.97742 -10.76930 -10.54511 -9.98753 -9.81324 -9.68101 -9.23051 -8.80944 -8.67512 -8.61202 -7.93549 -6.89421 -5.76303 -3.08838 1.62343 2.72093 2.77593 3.39159 3.45704 3.47346 3.65118 3.72595 4.44519 4.73754 4.80441 4.98437 5.07724 5.18922 5.22432 5.35367 5.40643 5.47323 5.55111 5.56847 5.59943 5.72088 5.73837 5.92379 6.08712 6.16707 6.24252 6.32868 6.40929 6.59803 6.72056 6.82485 6.95285 7.07525 7.23650 7.26923 7.39583 7.58907 7.92250 7.98383 8.54675 9.04051 9.71094 10.63084 11.40928 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017127 B = 0.005190 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.492504 B = 5393.884159 C = 6441.313891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.032 3.968 3 C -0.205 4.205 4 C -0.138 4.138 5 C -0.045 4.045 6 C 0.584 3.416 7 O -0.563 6.563 8 N -0.699 5.699 9 C 0.124 3.876 10 C 0.127 3.873 11 H 0.049 0.951 12 C -0.161 4.161 13 C 0.151 3.849 14 N -0.601 5.601 15 C -0.213 4.213 16 H 0.081 0.919 17 C -0.007 4.007 18 N -0.918 5.918 19 Si 0.907 3.093 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.290 1.290 23 N -0.409 5.409 24 C 0.066 3.934 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.140 0.860 29 H 0.145 0.855 30 H 0.406 0.594 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.025 0.975 36 H 0.072 0.928 37 H 0.252 0.748 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.922 -0.720 -10.208 17.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.229 4.229 4 C -0.164 4.164 5 C -0.159 4.159 6 C 0.372 3.628 7 O -0.444 6.444 8 N -0.349 5.349 9 C 0.000 4.000 10 C 0.019 3.981 11 H 0.067 0.933 12 C -0.200 4.200 13 C 0.026 3.974 14 N -0.327 5.327 15 C -0.340 4.340 16 H 0.099 0.901 17 C -0.203 4.203 18 N -0.565 5.565 19 Si 0.737 3.263 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.217 1.217 23 N -0.083 5.083 24 C -0.075 4.075 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.158 0.842 29 H 0.163 0.837 30 H 0.241 0.759 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.043 0.957 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.160 -1.849 -9.935 17.396 hybrid contribution -0.428 0.966 0.943 1.416 sum -14.587 -0.882 -8.992 17.159 Atomic orbital electron populations 1.20344 0.87998 1.03177 1.02689 1.20503 0.93625 0.85964 1.08362 1.20579 0.92502 0.97615 1.12224 1.21387 0.97936 0.92106 1.05016 1.20134 0.84305 0.93699 1.17733 1.16973 0.82480 0.86649 0.76702 1.90722 1.86363 1.14877 1.52475 1.45629 1.04774 1.12825 1.71634 1.21845 0.83635 0.93755 1.00787 1.22431 0.91872 0.94357 0.89460 0.93340 1.23663 0.97022 0.99508 0.99767 1.22030 0.87776 0.92974 0.94657 1.45693 1.03154 1.78544 1.05305 1.18920 0.89574 1.37733 0.87778 0.90080 1.24760 0.95791 1.02065 0.97717 1.69836 1.07769 1.54065 1.24868 0.86117 0.79339 0.78010 0.82797 1.20400 1.21764 1.21730 1.43717 1.04684 1.06431 1.53445 1.22228 1.01841 0.80133 1.03346 0.90919 0.90003 0.91818 0.84207 0.83733 0.75868 0.90913 0.92210 0.90196 0.92308 0.95711 0.90972 0.93762 0.90872 0.90427 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 9.88 36.01 0.36 -0.34 16 2 C 0.03 0.40 6.87 -81.95 -0.56 -0.16 16 3 C -0.21 -2.69 10.71 -39.98 -0.43 -3.11 16 4 C -0.14 -2.05 10.35 -39.12 -0.40 -2.46 16 5 C -0.05 -0.75 6.88 -81.98 -0.56 -1.31 16 6 C 0.58 10.76 7.77 -12.85 -0.10 10.66 16 7 O -0.56 -11.44 14.65 5.20 0.08 -11.37 16 8 N -0.70 -12.56 5.31 -61.61 -0.33 -12.89 16 9 C 0.12 2.28 5.53 -4.04 -0.02 2.26 16 10 C 0.13 2.44 4.10 -72.40 -0.30 2.15 16 11 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 12 C -0.16 -2.92 8.03 -26.21 -0.21 -3.13 16 13 C 0.15 3.46 7.39 -8.51 -0.06 3.40 16 14 N -0.60 -14.68 3.65 -177.00 -0.65 -15.33 16 15 C -0.21 -5.75 10.55 -15.06 -0.16 -5.91 16 16 H 0.08 2.14 7.50 -52.49 -0.39 1.74 16 17 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 18 N -0.92 -27.07 11.51 55.49 0.64 -26.43 16 19 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 N -0.41 -5.86 3.16 -115.62 -0.37 -6.23 16 24 C 0.07 0.77 10.17 59.85 0.61 1.38 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.45 7.73 -51.93 -0.40 0.05 16 28 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 29 H 0.14 1.94 7.49 -52.49 -0.39 1.55 16 30 H 0.41 7.04 7.32 -40.82 -0.30 6.74 16 31 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.45 8.12 -51.93 -0.42 1.02 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 37 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.69 7.78 -51.93 -0.40 0.28 16 40 H 0.11 1.49 6.20 -51.93 -0.32 1.17 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -32.84 333.67 -8.51 -41.35 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.94 Total: 5.44 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -1.94 Total: 3.14 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: -0.70 Total: -60.88 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.84 -8.51 -41.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038051427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.769 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds