Wall clock time and date at job start Mon Mar 30 2020 01:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35442 * 125.56648 * 2 1 4 4 C 1.39840 * 107.86646 * 179.97438 * 3 2 1 5 5 C 1.37875 * 107.08216 * 359.75357 * 4 3 2 6 6 C 1.46679 * 126.23186 * 180.23376 * 5 4 3 7 7 O 1.21693 * 119.99672 * 185.66329 * 6 5 4 8 8 N 1.34774 * 119.99686 * 5.67021 * 6 5 4 9 9 C 1.46504 * 119.99448 * 185.13478 * 8 6 5 10 10 C 1.53004 * 109.46818 * 179.97438 * 9 8 6 11 11 H 1.09003 * 112.74014 * 303.75945 * 10 9 8 12 12 C 1.53499 * 113.46358 * 172.94131 * 10 9 8 13 13 C 1.53506 * 83.34009 * 219.14977 * 12 10 9 14 14 N 1.47059 * 113.46942 * 74.50545 * 10 9 8 15 15 C 1.36941 * 136.05762 * 321.86326 * 14 10 9 16 16 H 1.07998 * 119.99723 * 0.02562 * 15 14 10 17 17 C 1.38815 * 120.00147 * 179.97438 * 15 14 10 18 18 N 1.31618 * 119.99842 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00100 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47188 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47222 * 119.99810 * 19 17 15 22 22 H 1.48497 * 109.47277 * 240.00711 * 19 17 15 23 23 N 1.35535 * 125.55793 * 179.97438 * 2 1 3 24 24 C 1.46501 * 125.68172 * 0.02562 * 23 2 1 25 25 H 1.09006 * 109.46853 * 270.02739 * 1 2 3 26 26 H 1.08996 * 109.47122 * 30.02349 * 1 2 3 27 27 H 1.08999 * 109.47567 * 150.02934 * 1 2 3 28 28 H 1.07998 * 126.07005 * 359.97438 * 3 2 1 29 29 H 1.08000 * 126.45557 * 180.02562 * 4 3 2 30 30 H 0.96998 * 120.00473 * 5.13200 * 8 6 5 31 31 H 1.09002 * 109.47151 * 299.99662 * 9 8 6 32 32 H 1.09004 * 109.47217 * 59.99932 * 9 8 6 33 33 H 1.08997 * 114.21091 * 332.73333 * 12 10 9 34 34 H 1.09001 * 114.20397 * 105.56908 * 12 10 9 35 35 H 1.08994 * 113.46890 * 271.28590 * 13 12 10 36 36 H 1.08998 * 113.46327 * 140.84937 * 13 12 10 37 37 H 0.96996 * 120.00155 * 179.97438 * 18 17 15 38 38 H 1.08996 * 109.47205 * 85.91736 * 24 23 2 39 39 H 1.08993 * 109.46550 * 325.91218 * 24 23 2 40 40 H 1.08999 * 109.46975 * 205.91238 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1017 0.0000 4 6 3.6270 0.6766 0.0006 5 6 3.6122 -0.7021 0.0066 6 6 4.7859 -1.5817 0.0142 7 8 4.6441 -2.7863 -0.0850 8 7 6.0213 -1.0558 0.1311 9 6 7.1987 -1.9213 0.0258 10 6 8.4661 -1.0806 0.1928 11 1 8.5247 -0.2601 -0.5223 12 6 9.7497 -1.9188 0.2700 13 6 10.1479 -0.8852 1.3327 14 7 8.7151 -0.6661 1.5816 15 6 7.9498 -0.2556 2.6404 16 1 6.8774 -0.1833 2.5355 17 6 8.5523 0.0664 3.8488 18 7 9.8593 -0.0222 3.9767 19 14 7.5083 0.6256 5.2933 20 1 6.0780 0.6400 4.8941 21 1 7.6947 -0.3108 6.4306 22 1 7.9218 1.9915 5.7037 23 7 2.2952 -1.1026 0.0005 24 6 1.8240 -2.4898 0.0006 25 1 -0.3633 0.0005 1.0277 26 1 -0.3633 0.8897 -0.5142 27 1 -0.3634 -0.8902 -0.5134 28 1 1.9546 2.1267 -0.0004 29 1 4.5025 1.3090 0.0011 30 1 6.1309 -0.1044 0.2848 31 1 7.1614 -2.6819 0.8057 32 1 7.2090 -2.4034 -0.9518 33 1 9.6030 -2.9263 0.6593 34 1 10.3586 -1.8880 -0.6336 35 1 10.6554 -0.0129 0.9212 36 1 10.6749 -1.3180 2.1830 37 1 10.2804 0.2032 4.8209 38 1 1.6383 -2.8105 -1.0244 39 1 0.9012 -2.5599 0.5762 40 1 2.5823 -3.1310 0.4501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038051427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:57 Heat of formation + Delta-G solvation = 45.069868 kcal Electronic energy + Delta-G solvation = -21570.284860 eV Core-core repulsion = 18386.913646 eV Total energy + Delta-G solvation = -3183.371214 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.42402 -40.49701 -39.50634 -35.67896 -34.27637 -33.73051 -32.64619 -30.03326 -29.57953 -27.42558 -27.09930 -25.39378 -23.79832 -22.83245 -21.33917 -20.96572 -20.14784 -19.01762 -18.27269 -17.15568 -17.06708 -16.72543 -16.38423 -15.91398 -15.59137 -15.34503 -14.99323 -14.58772 -14.39505 -14.12097 -13.95148 -13.66005 -13.57284 -13.35189 -12.99645 -12.94972 -12.85376 -12.71963 -12.63350 -12.57561 -12.30429 -11.85424 -11.62055 -11.26483 -10.91367 -10.82111 -10.09623 -9.71228 -9.00586 -8.88643 -7.87894 -5.19077 0.44839 1.42378 1.43586 1.52561 1.65254 1.75050 2.35684 2.41487 2.49163 3.34424 3.44076 3.76071 3.92146 3.94049 3.95023 4.14496 4.27175 4.33216 4.34918 4.51233 4.62400 4.63702 4.69489 4.74716 4.80281 4.88463 5.06185 5.08546 5.09749 5.16212 5.23767 5.33504 5.42382 5.59744 5.74908 5.86288 5.97671 5.99294 6.32041 6.52962 6.94704 7.15421 7.64145 8.63723 9.29807 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017127 B = 0.005190 C = 0.004346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.492504 B = 5393.884159 C = 6441.313891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.045 3.955 3 C -0.221 4.221 4 C -0.139 4.139 5 C -0.089 4.089 6 C 0.581 3.419 7 O -0.591 6.591 8 N -0.700 5.700 9 C 0.133 3.867 10 C 0.132 3.868 11 H 0.071 0.929 12 C -0.133 4.133 13 C 0.143 3.857 14 N -0.629 5.629 15 C -0.205 4.205 16 H 0.083 0.917 17 C -0.069 4.069 18 N -0.952 5.952 19 Si 0.965 3.035 20 H -0.270 1.270 21 H -0.297 1.297 22 H -0.291 1.291 23 N -0.417 5.417 24 C 0.064 3.936 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.078 0.922 28 H 0.164 0.836 29 H 0.150 0.850 30 H 0.408 0.592 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.024 0.976 36 H 0.036 0.964 37 H 0.245 0.755 38 H 0.085 0.915 39 H 0.109 0.891 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.313 -0.166 -11.629 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C -0.244 4.244 4 C -0.166 4.166 5 C -0.201 4.201 6 C 0.371 3.629 7 O -0.475 6.475 8 N -0.349 5.349 9 C 0.009 3.991 10 C 0.026 3.974 11 H 0.088 0.912 12 C -0.171 4.171 13 C 0.017 3.983 14 N -0.355 5.355 15 C -0.333 4.333 16 H 0.101 0.899 17 C -0.261 4.261 18 N -0.602 5.602 19 Si 0.795 3.205 20 H -0.194 1.194 21 H -0.225 1.225 22 H -0.218 1.218 23 N -0.091 5.091 24 C -0.077 4.077 25 H 0.104 0.896 26 H 0.120 0.880 27 H 0.097 0.903 28 H 0.182 0.818 29 H 0.168 0.832 30 H 0.244 0.756 31 H 0.061 0.939 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.120 0.880 35 H 0.042 0.958 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.104 0.896 39 H 0.128 0.872 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.563 -1.297 -11.393 20.145 hybrid contribution 0.235 0.801 1.301 1.545 sum -16.328 -0.497 -10.093 19.202 Atomic orbital electron populations 1.20530 0.84639 1.04957 1.04008 1.21288 0.95606 0.85098 1.05253 1.20960 0.91752 0.99158 1.12577 1.21649 0.99265 0.91692 1.03975 1.19988 0.84739 0.94033 1.21383 1.17301 0.83076 0.86614 0.75950 1.90696 1.86787 1.16059 1.53933 1.45601 1.04754 1.12790 1.71787 1.21657 0.83584 0.92988 1.00883 1.22589 0.92832 0.94921 0.87044 0.91177 1.23480 0.96172 0.97903 0.99578 1.22054 0.86929 0.94309 0.94995 1.46004 1.04034 1.78430 1.07074 1.19200 0.90028 1.35427 0.88640 0.89927 1.25476 0.96808 1.03649 1.00197 1.70004 1.09114 1.56174 1.24917 0.85195 0.78385 0.77144 0.79825 1.19445 1.22498 1.21761 1.43989 1.04203 1.07683 1.53231 1.22323 1.02109 0.78756 1.04481 0.89640 0.88002 0.90337 0.81811 0.83228 0.75624 0.93855 0.89979 0.90238 0.88017 0.95827 0.94560 0.94558 0.89615 0.87241 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 9.88 71.24 0.70 -0.33 16 2 C 0.05 1.00 6.87 41.34 0.28 1.29 16 3 C -0.22 -5.27 10.71 22.01 0.24 -5.03 16 4 C -0.14 -3.98 10.35 22.57 0.23 -3.75 16 5 C -0.09 -2.89 6.88 40.35 0.28 -2.61 16 6 C 0.58 21.51 7.77 86.45 0.67 22.19 16 7 O -0.59 -24.41 14.65 -4.33 -0.06 -24.47 16 8 N -0.70 -24.99 5.31 -467.06 -2.48 -27.47 16 9 C 0.13 4.81 5.53 86.38 0.48 5.29 16 10 C 0.13 4.92 4.10 41.79 0.17 5.09 16 11 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 12 C -0.13 -4.57 8.03 30.93 0.25 -4.32 16 13 C 0.14 6.56 7.39 83.18 0.62 7.17 16 14 N -0.63 -30.81 3.65 -713.92 -2.61 -33.42 16 15 C -0.20 -11.17 10.55 84.03 0.89 -10.28 16 16 H 0.08 4.38 7.50 -2.91 -0.02 4.36 16 17 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 18 N -0.95 -57.78 11.51 21.65 0.25 -57.54 16 19 Si 0.96 46.75 29.55 68.60 2.03 48.77 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 23 N -0.42 -11.33 3.16 -519.72 -1.64 -12.98 16 24 C 0.06 1.41 10.17 127.77 1.30 2.71 16 25 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 0.77 7.73 -2.39 -0.02 0.75 16 28 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 29 H 0.15 3.92 7.49 -2.91 -0.02 3.90 16 30 H 0.41 14.03 7.32 -92.71 -0.68 13.35 16 31 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.08 2.77 8.12 -2.39 -0.02 2.75 16 34 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.04 1.91 7.12 -2.39 -0.02 1.89 16 37 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.11 1.65 7.78 -2.39 -0.02 1.63 16 40 H 0.08 2.21 6.20 -2.39 -0.01 2.20 16 Total: -1.00 -72.99 333.67 2.42 -70.58 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.36 Total: 22.56 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 6.57 Total: 13.96 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -6.48 Total: -131.40 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.06 Total: -24.47 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -72.99 2.42 -70.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038051427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.646 kcal (2) G-P(sol) polarization free energy of solvation -72.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds