Wall clock time and date at job start Mon Mar 30 2020 01:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39839 * 126.45403 * 2 1 4 4 C 1.35456 * 107.85872 * 180.29759 * 3 2 1 5 5 N 1.35531 * 108.87376 * 359.74147 * 4 3 2 6 6 C 1.46498 * 125.67722 * 180.02562 * 5 4 3 7 7 C 1.37645 * 108.64407 * 359.97438 * 5 4 3 8 8 C 1.46684 * 126.23425 * 180.02562 * 7 5 4 9 9 O 1.21690 * 120.00018 * 99.42630 * 8 7 5 10 10 N 1.34775 * 120.00052 * 279.43376 * 8 7 5 11 11 C 1.46501 * 120.00118 * 174.84651 * 10 8 7 12 12 C 1.53003 * 109.47132 * 179.97438 * 11 10 8 13 13 H 1.08998 * 112.77704 * 56.28281 * 12 11 10 14 14 C 1.53493 * 113.46600 * 187.06229 * 12 11 10 15 15 C 1.53500 * 83.34439 * 140.84994 * 14 12 11 16 16 N 1.47067 * 113.46669 * 285.49860 * 12 11 10 17 17 C 1.36932 * 136.05963 * 38.06357 * 16 12 11 18 18 H 1.08000 * 120.00225 * 0.02562 * 17 16 12 19 19 C 1.38813 * 119.99715 * 179.97438 * 17 16 12 20 20 N 1.31613 * 120.00282 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99654 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46894 * 90.00448 * 21 19 17 23 23 H 1.48498 * 109.47068 * 210.00295 * 21 19 17 24 24 H 1.48496 * 109.47357 * 330.00484 * 21 19 17 25 25 H 1.08998 * 109.47453 * 270.14315 * 1 2 3 26 26 H 1.08994 * 109.47264 * 30.14494 * 1 2 3 27 27 H 1.09002 * 109.47008 * 150.14227 * 1 2 3 28 28 H 1.07995 * 126.07325 * 0.05652 * 3 2 1 29 29 H 1.08004 * 125.56046 * 179.69751 * 4 3 2 30 30 H 1.09001 * 109.47573 * 274.87758 * 6 5 4 31 31 H 1.09000 * 109.47315 * 34.87534 * 6 5 4 32 32 H 1.08999 * 109.47546 * 154.87584 * 6 5 4 33 33 H 0.97003 * 119.99836 * 354.84644 * 10 8 7 34 34 H 1.09002 * 109.46854 * 60.00101 * 11 10 8 35 35 H 1.08992 * 109.46995 * 300.00349 * 11 10 8 36 36 H 1.09003 * 114.20506 * 254.43906 * 14 12 11 37 37 H 1.09003 * 114.20852 * 27.26196 * 14 12 11 38 38 H 1.08998 * 113.46583 * 219.15194 * 15 14 12 39 39 H 1.08997 * 113.46501 * 88.71030 * 15 14 12 40 40 H 0.97007 * 119.99704 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1248 0.0000 4 6 3.6217 0.6928 -0.0067 5 7 3.6283 -0.6625 -0.0051 6 6 4.8225 -1.5111 -0.0103 7 6 2.3263 -1.1088 0.0033 8 6 1.8898 -2.5092 0.0082 9 8 1.5501 -3.0371 1.0507 10 7 1.8651 -3.2114 -1.1420 11 6 1.5384 -4.6393 -1.1216 12 6 1.5792 -5.1923 -2.5476 13 1 2.5377 -5.0233 -3.0384 14 6 1.0841 -6.6411 -2.6558 15 6 0.4450 -6.1370 -3.9573 16 7 0.4240 -4.7912 -3.3646 17 6 -0.3368 -3.6619 -3.5093 18 1 -0.1171 -2.7836 -2.9205 19 6 -1.3898 -3.6457 -4.4137 20 7 -1.6572 -4.7158 -5.1317 21 14 -2.4273 -2.1049 -4.6115 22 1 -1.8356 -1.2417 -5.6650 23 1 -3.8089 -2.4851 -5.0014 24 1 -2.4622 -1.3630 -3.3256 25 1 -0.3634 0.0026 1.0276 26 1 -0.3633 0.8886 -0.5161 27 1 -0.3633 -0.8913 -0.5116 28 1 2.0136 2.1549 0.0009 29 1 4.4972 1.3253 -0.0130 30 1 5.1640 -1.6516 -1.0358 31 1 5.6100 -1.0336 0.5727 32 1 4.5820 -2.4795 0.4284 33 1 2.0637 -2.7712 -1.9833 34 1 0.5397 -4.7776 -0.7072 35 1 2.2642 -5.1693 -0.5050 36 1 1.8770 -7.3747 -2.8021 37 1 0.3663 -6.9268 -1.8868 38 1 -0.5485 -6.5464 -4.1399 39 1 1.1014 -6.2197 -4.8235 40 1 -2.3934 -4.7045 -5.7633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038191894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:54 Heat of formation + Delta-G solvation = 69.650288 kcal Electronic energy + Delta-G solvation = -21895.210034 eV Core-core repulsion = 18712.904707 eV Total energy + Delta-G solvation = -3182.305327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27004 -39.02486 -37.94603 -34.05669 -33.64408 -32.22433 -30.30844 -28.66534 -27.98791 -27.12113 -25.13527 -23.48597 -22.69141 -21.32862 -20.16523 -19.52565 -18.86870 -17.47635 -16.62512 -15.98785 -15.54338 -15.28306 -15.05698 -14.51321 -14.18527 -13.74525 -13.43703 -13.34959 -13.12185 -13.04119 -12.76398 -12.67563 -11.96903 -11.93189 -11.84130 -11.54465 -11.33721 -11.13660 -11.00598 -10.75882 -10.59715 -10.06781 -9.84559 -9.77322 -9.26624 -8.81969 -8.62347 -8.47566 -7.96689 -6.91796 -5.77671 -3.10535 1.99435 2.46720 2.95179 3.13932 3.39103 3.45096 3.46436 3.67137 4.43229 4.63081 4.91150 4.99357 5.07738 5.19174 5.24942 5.37480 5.41071 5.46864 5.53538 5.69310 5.84714 5.88297 5.99849 6.02528 6.14995 6.26618 6.29355 6.36656 6.49235 6.56544 6.67617 6.82342 6.96869 7.12391 7.20908 7.29485 7.36411 7.56645 7.83432 7.96564 8.46518 9.02298 9.69572 10.60997 11.39437 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015650 B = 0.006209 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.671313 B = 4508.755840 C = 5707.789188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.001 4.001 5 N -0.426 5.426 6 C 0.070 3.930 7 C -0.039 4.039 8 C 0.587 3.413 9 O -0.538 6.538 10 N -0.702 5.702 11 C 0.120 3.880 12 C 0.127 3.873 13 H 0.047 0.953 14 C -0.161 4.161 15 C 0.151 3.849 16 N -0.600 5.600 17 C -0.214 4.214 18 H 0.081 0.919 19 C -0.006 4.006 20 N -0.919 5.919 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.278 1.278 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.139 0.861 29 H 0.165 0.835 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.405 0.595 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.025 0.975 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.478 5.924 8.013 15.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.225 4.225 4 C -0.133 4.133 5 N -0.102 5.102 6 C -0.071 4.071 7 C -0.152 4.152 8 C 0.371 3.629 9 O -0.414 6.414 10 N -0.352 5.352 11 C -0.005 4.005 12 C 0.019 3.981 13 H 0.064 0.936 14 C -0.200 4.200 15 C 0.026 3.974 16 N -0.326 5.326 17 C -0.342 4.342 18 H 0.099 0.901 19 C -0.203 4.203 20 N -0.566 5.566 21 Si 0.737 3.263 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.204 1.204 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.157 0.843 29 H 0.182 0.818 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.240 0.760 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.091 0.909 39 H 0.042 0.958 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.266 5.464 8.610 15.951 hybrid contribution -0.300 1.164 -0.757 1.420 sum 11.966 6.628 7.853 15.773 Atomic orbital electron populations 1.20226 0.89671 1.02699 1.01843 1.19803 0.95440 0.90953 1.05567 1.20660 0.91733 0.98400 1.11725 1.21785 0.99255 0.82448 1.09859 1.43768 1.04960 1.06231 1.55252 1.22089 0.85987 0.95502 1.03546 1.20171 0.83814 0.93851 1.17385 1.17106 0.78187 0.83519 0.84067 1.90805 1.48438 1.70095 1.32070 1.46056 1.69039 1.11048 1.09030 1.21882 1.00971 0.78990 0.98627 1.22408 0.92713 0.93026 0.89909 0.93582 1.23668 1.00121 0.94703 1.01479 1.22031 0.99299 0.84730 0.91381 1.45679 1.30315 1.11913 1.44707 1.18866 1.07039 0.89769 1.18494 0.90129 1.24767 0.99096 0.97617 0.98794 1.69827 1.31512 1.27462 1.27753 0.86194 0.79782 0.82342 0.78004 1.21627 1.21630 1.20352 0.91664 0.91555 0.91634 0.84299 0.81812 0.90406 0.89630 0.89833 0.75972 0.90763 0.92287 0.92358 0.90143 0.90928 0.95764 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 10.20 36.00 0.37 -1.00 16 2 C -0.11 -1.77 6.21 -104.16 -0.65 -2.41 16 3 C -0.20 -2.67 10.76 -39.98 -0.43 -3.10 16 4 C 0.00 -0.01 11.38 -16.91 -0.19 -0.20 16 5 N -0.43 -5.56 3.16 -120.24 -0.38 -5.94 16 6 C 0.07 0.65 10.98 59.85 0.66 1.31 16 7 C -0.04 -0.64 6.63 -81.98 -0.54 -1.19 16 8 C 0.59 10.76 6.58 -12.85 -0.08 10.68 16 9 O -0.54 -11.49 17.12 5.20 0.09 -11.40 16 10 N -0.70 -12.35 5.33 -61.62 -0.33 -12.68 16 11 C 0.12 2.16 5.53 -4.04 -0.02 2.13 16 12 C 0.13 2.42 4.10 -72.39 -0.30 2.12 16 13 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 14 C -0.16 -2.88 8.03 -26.22 -0.21 -3.09 16 15 C 0.15 3.43 7.39 -8.50 -0.06 3.37 16 16 N -0.60 -14.54 3.65 -176.99 -0.65 -15.19 16 17 C -0.21 -5.76 10.55 -15.06 -0.16 -5.92 16 18 H 0.08 2.10 7.50 -52.49 -0.39 1.71 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 20 N -0.92 -26.96 11.51 55.49 0.64 -26.33 16 21 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 28 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.85 7.68 -51.93 -0.40 0.45 16 33 H 0.41 7.06 8.36 -40.82 -0.34 6.72 16 34 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 38 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 39 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 339.93 15.07 5.12 5.12 Total: -1.00 -33.12 339.93 -8.37 -41.49 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.12 Total: 5.40 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -1.72 Total: 2.44 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.72 Total: -60.14 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.12 -8.37 -41.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038191894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.142 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds