Wall clock time and date at job start Mon Mar 30 2020 01:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39839 * 126.45403 * 2 1 4 4 C 1.35456 * 107.85872 * 180.29759 * 3 2 1 5 5 N 1.35531 * 108.87376 * 359.74147 * 4 3 2 6 6 C 1.46498 * 125.67722 * 180.02562 * 5 4 3 7 7 C 1.37645 * 108.64407 * 359.97438 * 5 4 3 8 8 C 1.46684 * 126.23425 * 180.02562 * 7 5 4 9 9 O 1.21690 * 120.00018 * 99.42630 * 8 7 5 10 10 N 1.34775 * 120.00052 * 279.43376 * 8 7 5 11 11 C 1.46501 * 120.00118 * 174.84651 * 10 8 7 12 12 C 1.53003 * 109.47132 * 179.97438 * 11 10 8 13 13 H 1.08998 * 112.77704 * 56.28281 * 12 11 10 14 14 C 1.53493 * 113.46600 * 187.06229 * 12 11 10 15 15 C 1.53500 * 83.34439 * 140.84994 * 14 12 11 16 16 N 1.47067 * 113.46669 * 285.49860 * 12 11 10 17 17 C 1.36932 * 136.05963 * 38.06357 * 16 12 11 18 18 H 1.08000 * 120.00225 * 0.02562 * 17 16 12 19 19 C 1.38813 * 119.99715 * 179.97438 * 17 16 12 20 20 N 1.31613 * 120.00282 * 0.02562 * 19 17 16 21 21 Si 1.86810 * 119.99654 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46894 * 90.00448 * 21 19 17 23 23 H 1.48498 * 109.47068 * 210.00295 * 21 19 17 24 24 H 1.48496 * 109.47357 * 330.00484 * 21 19 17 25 25 H 1.08998 * 109.47453 * 270.14315 * 1 2 3 26 26 H 1.08994 * 109.47264 * 30.14494 * 1 2 3 27 27 H 1.09002 * 109.47008 * 150.14227 * 1 2 3 28 28 H 1.07995 * 126.07325 * 0.05652 * 3 2 1 29 29 H 1.08004 * 125.56046 * 179.69751 * 4 3 2 30 30 H 1.09001 * 109.47573 * 274.87758 * 6 5 4 31 31 H 1.09000 * 109.47315 * 34.87534 * 6 5 4 32 32 H 1.08999 * 109.47546 * 154.87584 * 6 5 4 33 33 H 0.97003 * 119.99836 * 354.84644 * 10 8 7 34 34 H 1.09002 * 109.46854 * 60.00101 * 11 10 8 35 35 H 1.08992 * 109.46995 * 300.00349 * 11 10 8 36 36 H 1.09003 * 114.20506 * 254.43906 * 14 12 11 37 37 H 1.09003 * 114.20852 * 27.26196 * 14 12 11 38 38 H 1.08998 * 113.46583 * 219.15194 * 15 14 12 39 39 H 1.08997 * 113.46501 * 88.71030 * 15 14 12 40 40 H 0.97007 * 119.99704 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1248 0.0000 4 6 3.6217 0.6928 -0.0067 5 7 3.6283 -0.6625 -0.0051 6 6 4.8225 -1.5111 -0.0103 7 6 2.3263 -1.1088 0.0033 8 6 1.8898 -2.5092 0.0082 9 8 1.5501 -3.0371 1.0507 10 7 1.8651 -3.2114 -1.1420 11 6 1.5384 -4.6393 -1.1216 12 6 1.5792 -5.1923 -2.5476 13 1 2.5377 -5.0233 -3.0384 14 6 1.0841 -6.6411 -2.6558 15 6 0.4450 -6.1370 -3.9573 16 7 0.4240 -4.7912 -3.3646 17 6 -0.3368 -3.6619 -3.5093 18 1 -0.1171 -2.7836 -2.9205 19 6 -1.3898 -3.6457 -4.4137 20 7 -1.6572 -4.7158 -5.1317 21 14 -2.4273 -2.1049 -4.6115 22 1 -1.8356 -1.2417 -5.6650 23 1 -3.8089 -2.4851 -5.0014 24 1 -2.4622 -1.3630 -3.3256 25 1 -0.3634 0.0026 1.0276 26 1 -0.3633 0.8886 -0.5161 27 1 -0.3633 -0.8913 -0.5116 28 1 2.0136 2.1549 0.0009 29 1 4.4972 1.3253 -0.0130 30 1 5.1640 -1.6516 -1.0358 31 1 5.6100 -1.0336 0.5727 32 1 4.5820 -2.4795 0.4284 33 1 2.0637 -2.7712 -1.9833 34 1 0.5397 -4.7776 -0.7072 35 1 2.2642 -5.1693 -0.5050 36 1 1.8770 -7.3747 -2.8021 37 1 0.3663 -6.9268 -1.8868 38 1 -0.5485 -6.5464 -4.1399 39 1 1.1014 -6.2197 -4.8235 40 1 -2.3934 -4.7045 -5.7633 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038191894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:53 Heat of formation + Delta-G solvation = 47.795839 kcal Electronic energy + Delta-G solvation = -21896.157714 eV Core-core repulsion = 18712.904707 eV Total energy + Delta-G solvation = -3183.253007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.33256 -40.52185 -39.55289 -35.57781 -34.63968 -34.25400 -31.41535 -30.05550 -29.76966 -28.41634 -26.12493 -25.40284 -24.14368 -22.74213 -21.24984 -21.07995 -20.31203 -18.76776 -18.26996 -17.37653 -17.11018 -16.72076 -16.17627 -16.04438 -15.70142 -15.39762 -14.91175 -14.72207 -14.29107 -14.22475 -13.95951 -13.66951 -13.62368 -13.34651 -12.98912 -12.89348 -12.85232 -12.71081 -12.60038 -12.50613 -12.35733 -11.88291 -11.65087 -11.41475 -10.96227 -10.83570 -10.12966 -9.46078 -9.05929 -8.89889 -7.88596 -5.19953 0.89457 1.25866 1.43078 1.44309 1.52453 1.90381 1.97175 2.40074 2.48074 3.33424 3.42288 3.72697 3.88153 3.92987 4.10739 4.21281 4.31323 4.33592 4.36454 4.39324 4.58055 4.61784 4.67700 4.75297 4.81314 4.86351 5.04597 5.05488 5.07435 5.12242 5.31302 5.35002 5.42440 5.58422 5.73365 5.90503 5.96840 6.04007 6.38808 6.42789 6.93574 7.04737 7.63491 8.62550 9.28809 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015650 B = 0.006209 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.671313 B = 4508.755840 C = 5707.789188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.133 4.133 3 C -0.218 4.218 4 C 0.022 3.978 5 N -0.424 5.424 6 C 0.063 3.937 7 C -0.077 4.077 8 C 0.593 3.407 9 O -0.577 6.577 10 N -0.697 5.697 11 C 0.128 3.872 12 C 0.134 3.866 13 H 0.071 0.929 14 C -0.133 4.133 15 C 0.142 3.858 16 N -0.630 5.630 17 C -0.206 4.206 18 H 0.082 0.918 19 C -0.068 4.068 20 N -0.952 5.952 21 Si 0.963 3.037 22 H -0.285 1.285 23 H -0.297 1.297 24 H -0.272 1.272 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.033 0.967 28 H 0.160 0.840 29 H 0.211 0.789 30 H 0.093 0.907 31 H 0.119 0.881 32 H 0.069 0.931 33 H 0.407 0.593 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.024 0.976 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.309 7.300 8.741 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.141 4.141 3 C -0.242 4.242 4 C -0.111 4.111 5 N -0.099 5.099 6 C -0.077 4.077 7 C -0.190 4.190 8 C 0.379 3.621 9 O -0.456 6.456 10 N -0.346 5.346 11 C 0.003 3.997 12 C 0.028 3.972 13 H 0.088 0.912 14 C -0.171 4.171 15 C 0.017 3.983 16 N -0.356 5.356 17 C -0.334 4.334 18 H 0.100 0.900 19 C -0.261 4.261 20 N -0.602 5.602 21 Si 0.792 3.208 22 H -0.212 1.212 23 H -0.224 1.224 24 H -0.197 1.197 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.052 0.948 28 H 0.177 0.823 29 H 0.228 0.772 30 H 0.112 0.888 31 H 0.138 0.862 32 H 0.088 0.912 33 H 0.242 0.758 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.054 0.946 39 H 0.042 0.958 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.144 6.832 9.347 19.063 hybrid contribution -1.078 0.739 -0.940 1.610 sum 14.067 7.571 8.407 18.052 Atomic orbital electron populations 1.20195 0.90420 1.01895 1.01772 1.20080 0.95535 0.92246 1.06220 1.20968 0.92092 0.98651 1.12448 1.22528 1.00234 0.82063 1.06292 1.44045 1.04578 1.07184 1.54140 1.22378 0.85304 0.94860 1.05152 1.19927 0.85871 0.92594 1.20647 1.17378 0.77123 0.84275 0.83364 1.90769 1.50257 1.71259 1.33311 1.46033 1.68621 1.10912 1.09055 1.21726 1.00041 0.79704 0.98188 1.22571 0.91837 0.93338 0.89489 0.91184 1.23482 1.00508 0.95082 0.98049 1.22059 0.97886 0.84653 0.93741 1.45993 1.32062 1.11693 1.45824 1.19142 1.06725 0.90544 1.17034 0.90023 1.25482 1.00852 1.00131 0.99620 1.69998 1.32168 1.29146 1.28896 0.85295 0.77917 0.79563 0.78032 1.21219 1.22372 1.19653 0.91464 0.89868 0.94757 0.82261 0.77245 0.88807 0.86223 0.91212 0.75799 0.93934 0.89627 0.87940 0.90278 0.94595 0.95848 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.71 10.20 71.24 0.73 -1.98 16 2 C -0.13 -4.16 6.21 -19.56 -0.12 -4.28 16 3 C -0.22 -5.23 10.76 22.01 0.24 -5.00 16 4 C 0.02 0.44 11.38 83.48 0.95 1.39 16 5 N -0.42 -9.92 3.16 -534.32 -1.69 -11.61 16 6 C 0.06 0.97 10.98 127.77 1.40 2.37 16 7 C -0.08 -2.48 6.63 40.35 0.27 -2.21 16 8 C 0.59 21.78 6.58 86.45 0.57 22.35 16 9 O -0.58 -25.08 17.12 -4.32 -0.07 -25.16 16 10 N -0.70 -24.24 5.33 -467.08 -2.49 -26.73 16 11 C 0.13 4.49 5.53 86.38 0.48 4.97 16 12 C 0.13 4.86 4.10 41.79 0.17 5.03 16 13 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 14 C -0.13 -4.48 8.03 30.93 0.25 -4.23 16 15 C 0.14 6.47 7.39 83.18 0.61 7.09 16 16 N -0.63 -30.57 3.65 -713.88 -2.61 -33.18 16 17 C -0.21 -11.22 10.55 84.03 0.89 -10.33 16 18 H 0.08 4.32 7.50 -2.91 -0.02 4.30 16 19 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 20 N -0.95 -57.70 11.51 21.65 0.25 -57.45 16 21 Si 0.96 46.54 29.55 68.60 2.03 48.56 16 22 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 23 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 24 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 25 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.03 1.26 7.96 -2.39 -0.02 1.24 16 28 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 29 H 0.21 2.04 8.06 -2.91 -0.02 2.02 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.28 7.68 -2.39 -0.02 1.26 16 33 H 0.41 13.93 8.36 -92.71 -0.77 13.15 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 37 H 0.08 2.72 8.12 -2.39 -0.02 2.70 16 38 H 0.04 1.88 7.12 -2.39 -0.02 1.87 16 39 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -74.94 339.93 2.57 -72.37 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.26 Total: 21.46 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: 6.90 Total: 11.74 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -6.53 Total: -128.98 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.07 Total: -25.16 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -74.94 2.57 -72.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038191894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.164 kcal (2) G-P(sol) polarization free energy of solvation -74.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds