Wall clock time and date at job start Mon Mar 30 2020 01:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39839 * 126.46189 * 2 1 4 4 C 1.35450 * 107.86453 * 179.97438 * 3 2 1 5 5 N 1.35530 * 108.87577 * 0.02562 * 4 3 2 6 6 C 1.46495 * 125.67721 * 180.02562 * 5 4 3 7 7 C 1.37651 * 108.64097 * 359.75497 * 5 4 3 8 8 C 1.46684 * 126.23113 * 180.24171 * 7 5 4 9 9 O 1.21696 * 120.00037 * 267.14882 * 8 7 5 10 10 N 1.34775 * 119.99521 * 87.15123 * 8 7 5 11 11 C 1.46503 * 119.99659 * 185.29111 * 10 8 7 12 12 C 1.53000 * 109.46997 * 179.97438 * 11 10 8 13 13 H 1.08997 * 112.97110 * 306.68548 * 12 11 10 14 14 C 1.53953 * 113.76974 * 174.99915 * 12 11 10 15 15 C 1.53943 * 86.29200 * 222.09529 * 14 12 11 16 16 N 1.47584 * 86.11841 * 23.61046 * 15 14 12 17 17 C 1.36932 * 134.49795 * 155.35969 * 16 15 14 18 18 H 1.07996 * 120.00279 * 179.97438 * 17 16 15 19 19 C 1.38816 * 119.99865 * 359.97438 * 17 16 15 20 20 N 1.31620 * 119.99936 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00179 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47148 * 89.99804 * 21 19 17 23 23 H 1.48497 * 109.47059 * 209.99633 * 21 19 17 24 24 H 1.48496 * 109.46853 * 329.99980 * 21 19 17 25 25 H 1.09003 * 109.47117 * 90.02134 * 1 2 3 26 26 H 1.09001 * 109.46809 * 330.02564 * 1 2 3 27 27 H 1.08998 * 109.47065 * 210.02143 * 1 2 3 28 28 H 1.08001 * 126.06221 * 359.95721 * 3 2 1 29 29 H 1.08005 * 125.55980 * 179.97438 * 4 3 2 30 30 H 1.08994 * 109.47735 * 85.16827 * 6 5 4 31 31 H 1.09007 * 109.47054 * 205.17316 * 6 5 4 32 32 H 1.08999 * 109.47067 * 325.16306 * 6 5 4 33 33 H 0.96999 * 120.00358 * 5.28874 * 10 8 7 34 34 H 1.08998 * 109.47279 * 300.00082 * 11 10 8 35 35 H 1.09006 * 109.46916 * 60.00601 * 11 10 8 36 36 H 1.09001 * 113.73913 * 336.44888 * 14 12 11 37 37 H 1.09002 * 113.73816 * 107.64178 * 14 12 11 38 38 H 1.09000 * 113.76555 * 137.90879 * 15 14 12 39 39 H 1.08994 * 113.77465 * 269.19291 * 15 14 12 40 40 H 0.97001 * 120.00464 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3381 1.1247 0.0000 4 6 3.6218 0.6927 0.0006 5 7 3.6284 -0.6626 0.0004 6 6 4.8225 -1.5112 0.0014 7 6 2.3263 -1.1089 0.0052 8 6 1.8898 -2.5093 0.0117 9 8 1.6562 -3.0787 -1.0382 10 7 1.7475 -3.1653 1.1803 11 6 1.4247 -4.5943 1.1836 12 6 1.3206 -5.0904 2.6272 13 1 2.2023 -4.8541 3.2228 14 6 0.8642 -6.5557 2.7484 15 6 -0.0240 -6.0783 3.9115 16 7 0.0454 -4.7440 3.2846 17 6 -0.7527 -3.6315 3.3048 18 1 -0.4699 -2.7538 2.7426 19 6 -1.9251 -3.6317 4.0479 20 7 -2.2700 -4.7015 4.7327 21 14 -3.0142 -2.1143 4.0749 22 1 -4.0059 -2.1970 2.9727 23 1 -3.7257 -2.0388 5.3762 24 1 -2.1769 -0.9009 3.8974 25 1 -0.3633 -0.0004 -1.0277 26 1 -0.3633 0.8902 0.5134 27 1 -0.3633 -0.8898 0.5142 28 1 2.0137 2.1548 -0.0007 29 1 4.4973 1.3251 0.0003 30 1 5.1680 -1.6513 1.0256 31 1 4.5804 -2.4798 -0.4362 32 1 5.6079 -1.0340 -0.5849 33 1 1.8589 -2.6914 2.0193 34 1 0.4738 -4.7532 0.6749 35 1 2.2101 -5.1454 0.6662 36 1 0.3027 -6.9133 1.8853 37 1 1.6577 -7.2388 3.0516 38 1 -1.0233 -6.5137 3.9084 39 1 0.4609 -6.1336 4.8861 40 1 -3.0891 -4.7017 5.2523 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038191896.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:57 Heat of formation + Delta-G solvation = 66.111146 kcal Electronic energy + Delta-G solvation = -21859.642528 eV Core-core repulsion = 18677.183732 eV Total energy + Delta-G solvation = -3182.458796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27776 -38.97192 -37.79789 -34.05952 -33.66403 -32.17833 -30.31829 -28.67027 -27.91793 -27.15925 -25.14708 -23.36853 -22.79659 -21.38291 -20.17496 -19.49447 -18.80165 -17.47404 -16.60763 -16.00271 -15.55403 -15.27232 -15.06526 -14.52423 -14.19585 -13.73169 -13.44013 -13.36544 -13.12841 -13.05643 -12.77139 -12.68962 -11.95460 -11.94182 -11.82965 -11.43258 -11.34231 -11.13261 -11.01395 -10.74312 -10.54645 -10.09467 -9.78655 -9.74394 -9.39954 -8.79413 -8.64536 -8.48365 -7.97648 -6.89753 -5.75774 -3.08469 2.00644 2.43142 2.93852 3.13153 3.40393 3.45763 3.46772 3.65620 4.44111 4.62653 4.90390 4.98592 5.05308 5.15036 5.24306 5.37854 5.40797 5.46165 5.59609 5.68712 5.84283 5.89473 5.99438 6.01432 6.14359 6.26365 6.28958 6.37865 6.48583 6.59867 6.67356 6.82586 6.96217 7.11535 7.24421 7.28698 7.39474 7.59592 7.81891 7.99025 8.45151 9.05195 9.71932 10.59003 11.40888 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016077 B = 0.006087 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.220212 B = 4598.648549 C = 5836.593434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.111 4.111 3 C -0.200 4.200 4 C -0.001 4.001 5 N -0.426 5.426 6 C 0.070 3.930 7 C -0.039 4.039 8 C 0.588 3.412 9 O -0.538 6.538 10 N -0.701 5.701 11 C 0.121 3.879 12 C 0.126 3.874 13 H 0.049 0.951 14 C -0.155 4.155 15 C 0.159 3.841 16 N -0.601 5.601 17 C -0.219 4.219 18 H 0.079 0.921 19 C -0.006 4.006 20 N -0.920 5.920 21 Si 0.905 3.095 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.139 0.861 29 H 0.165 0.835 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.405 0.595 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.026 0.974 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.625 6.008 -6.864 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C -0.225 4.225 4 C -0.134 4.134 5 N -0.101 5.101 6 C -0.071 4.071 7 C -0.152 4.152 8 C 0.371 3.629 9 O -0.415 6.415 10 N -0.351 5.351 11 C -0.003 4.003 12 C 0.018 3.982 13 H 0.066 0.934 14 C -0.194 4.194 15 C 0.034 3.966 16 N -0.327 5.327 17 C -0.347 4.347 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.736 3.264 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.205 1.205 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.157 0.843 29 H 0.182 0.818 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.240 0.760 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.044 0.956 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.489 5.496 -7.503 16.385 hybrid contribution -0.433 1.203 0.625 1.423 sum 13.056 6.699 -6.878 16.206 Atomic orbital electron populations 1.20241 0.89637 1.02785 1.01884 1.19817 0.95445 0.90963 1.05671 1.20661 0.91728 0.98413 1.11685 1.21783 0.99257 0.82433 1.09919 1.43751 1.04930 1.06215 1.55236 1.22089 0.85987 0.95569 1.03482 1.20144 0.83860 0.93844 1.17377 1.17100 0.77886 0.83706 0.84163 1.90809 1.50853 1.67893 1.31918 1.46043 1.69688 1.11282 1.08114 1.21840 1.00736 0.79004 0.98721 1.22498 0.91279 0.93512 0.90893 0.93420 1.23779 0.99671 0.94577 1.01405 1.22194 0.98067 0.84526 0.91861 1.46073 1.19082 1.13243 1.54348 1.18952 1.00021 0.91239 1.24454 0.90304 1.24750 0.98280 0.97641 0.99607 1.69817 1.24947 1.27587 1.34375 0.86218 0.80808 0.82369 0.77044 1.21492 1.21718 1.20512 0.91659 0.91509 0.91555 0.84297 0.81811 0.90470 0.89777 0.89613 0.75983 0.90622 0.92195 0.90465 0.92831 0.90776 0.95599 0.93711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 10.20 36.01 0.37 -1.01 16 2 C -0.11 -1.77 6.21 -104.16 -0.65 -2.42 16 3 C -0.20 -2.65 10.76 -39.98 -0.43 -3.08 16 4 C 0.00 -0.02 11.38 -16.91 -0.19 -0.21 16 5 N -0.43 -5.52 3.16 -120.24 -0.38 -5.90 16 6 C 0.07 0.65 10.98 59.84 0.66 1.30 16 7 C -0.04 -0.64 6.63 -81.98 -0.54 -1.18 16 8 C 0.59 10.68 6.58 -12.85 -0.08 10.60 16 9 O -0.54 -11.44 17.12 5.19 0.09 -11.35 16 10 N -0.70 -12.25 5.52 -61.61 -0.34 -12.59 16 11 C 0.12 2.18 5.54 -4.04 -0.02 2.16 16 12 C 0.13 2.39 4.33 -66.85 -0.29 2.10 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 14 C -0.16 -2.79 7.86 -25.80 -0.20 -3.00 16 15 C 0.16 3.62 7.52 -2.97 -0.02 3.59 16 16 N -0.60 -14.58 3.57 -170.73 -0.61 -15.19 16 17 C -0.22 -5.90 10.51 -15.06 -0.16 -6.05 16 18 H 0.08 2.06 7.80 -52.49 -0.41 1.65 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 20 N -0.92 -27.00 11.38 55.49 0.63 -26.36 16 21 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.07 1.17 7.95 -51.93 -0.41 0.75 16 28 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.16 1.28 8.06 -52.48 -0.42 0.85 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.86 7.69 -51.92 -0.40 0.46 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.41 6.96 8.46 -40.82 -0.35 6.62 16 34 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 340.48 15.07 5.13 5.13 Total: -1.00 -33.14 340.48 -8.31 -41.45 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.14 Total: 5.14 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.66 Total: 2.54 kcal Atomic # 7 Polarization: -59.33 SS G_CDS: -0.70 Total: -60.03 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.14 -8.31 -41.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038191896.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.560 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds