Wall clock time and date at job start Mon Mar 30 2020 02:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35452 * 125.56289 * 2 1 4 4 C 1.39837 * 107.86322 * 179.76921 * 3 2 1 5 5 C 1.50700 * 126.45714 * 180.23107 * 4 3 2 6 6 C 1.37869 * 107.08999 * 0.22976 * 4 3 2 7 7 C 1.46673 * 126.23689 * 180.02562 * 6 4 3 8 8 O 1.21693 * 119.99913 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00197 * 179.97438 * 7 6 4 10 10 C 1.46501 * 120.00381 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47331 * 180.02562 * 10 9 7 12 12 H 1.09002 * 112.96565 * 53.31604 * 11 10 9 13 13 C 1.53945 * 113.76806 * 185.00236 * 11 10 9 14 14 C 1.53951 * 86.29036 * 137.90366 * 13 11 10 15 15 N 1.47580 * 113.76463 * 281.49482 * 11 10 9 16 16 C 1.36936 * 134.49696 * 41.06122 * 15 11 10 17 17 H 1.08002 * 120.00063 * 359.97438 * 16 15 11 18 18 C 1.38809 * 120.00333 * 179.97438 * 16 15 11 19 19 N 1.31623 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00253 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47074 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46987 * 119.99724 * 20 18 16 23 23 H 1.48499 * 109.47375 * 239.99856 * 20 18 16 24 24 N 1.35539 * 125.56469 * 180.16498 * 2 1 3 25 25 H 0.96993 * 125.68130 * 0.04457 * 24 2 1 26 26 H 1.09000 * 109.46754 * 90.00229 * 1 2 3 27 27 H 1.08998 * 109.47034 * 209.99928 * 1 2 3 28 28 H 1.08992 * 109.47049 * 330.00037 * 1 2 3 29 29 H 1.08002 * 126.07027 * 0.03880 * 3 2 1 30 30 H 1.09000 * 109.47405 * 90.02115 * 5 4 3 31 31 H 1.08999 * 109.47485 * 210.02672 * 5 4 3 32 32 H 1.09009 * 109.47150 * 330.02057 * 5 4 3 33 33 H 0.97002 * 120.00165 * 359.97438 * 9 7 6 34 34 H 1.09006 * 109.46916 * 299.99964 * 10 9 7 35 35 H 1.08998 * 109.46816 * 59.99616 * 10 9 7 36 36 H 1.08994 * 113.73848 * 252.25001 * 13 11 10 37 37 H 1.08996 * 113.74375 * 23.45046 * 13 11 10 38 38 H 1.09005 * 113.76716 * 90.69351 * 14 13 11 39 39 H 1.08996 * 113.76578 * 221.97531 * 14 13 11 40 40 H 0.97005 * 119.99945 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6767 0.0054 5 6 4.8485 1.5592 0.0122 6 6 3.6123 -0.7019 0.0033 7 6 4.7860 -1.5814 0.0078 8 8 5.9049 -1.1029 0.0135 9 7 4.6254 -2.9196 0.0055 10 6 5.7978 -3.7981 0.0095 11 6 5.3409 -5.2583 0.0052 12 1 4.6453 -5.4839 -0.8032 13 6 6.4945 -6.2698 0.1317 14 6 5.5814 -7.0380 1.1044 15 7 4.9005 -5.7475 1.3260 16 6 4.1581 -5.2173 2.3472 17 1 3.7588 -4.2174 2.2619 18 6 3.9188 -5.9647 3.4921 19 7 4.4058 -7.1831 3.5964 20 14 2.9067 -5.2410 4.8855 21 1 2.4787 -3.8657 4.5240 22 1 1.7083 -6.0867 5.1179 23 1 3.7278 -5.1956 6.1220 24 7 2.2953 -1.1026 -0.0032 25 1 1.9835 -2.0210 -0.0064 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5138 29 1 1.9545 2.1269 0.0006 30 1 5.1387 1.7701 1.0415 31 1 5.6664 1.0515 -0.4991 32 1 4.6241 2.4944 -0.5010 33 1 3.7336 -3.3010 0.0013 34 1 6.4004 -3.6038 -0.8778 35 1 6.3929 -3.6058 0.9022 36 1 6.7070 -6.8105 -0.7905 37 1 7.3893 -5.8587 0.5990 38 1 4.9555 -7.7876 0.6201 39 1 6.0994 -7.4203 1.9839 40 1 4.2382 -7.7056 4.3964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038421192.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:19 Heat of formation + Delta-G solvation = 28.275123 kcal Electronic energy + Delta-G solvation = -21552.846014 eV Core-core repulsion = 18368.746525 eV Total energy + Delta-G solvation = -3184.099489 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.39432 -40.41283 -39.42218 -35.69752 -34.25606 -33.65288 -32.49714 -29.99297 -29.54306 -28.58055 -26.96672 -25.32431 -23.92021 -22.27443 -21.34577 -21.03785 -20.24504 -19.40758 -18.41998 -17.15445 -17.01150 -16.51595 -16.37176 -15.84340 -15.40963 -15.37230 -14.85085 -14.63877 -14.30914 -13.94666 -13.87748 -13.60842 -13.55227 -13.32883 -13.06876 -13.00945 -12.91111 -12.73269 -12.61128 -12.40681 -12.31525 -11.88168 -11.54598 -11.42140 -10.92828 -10.85904 -10.15282 -9.72324 -8.96958 -8.90995 -7.90324 -5.21747 0.43845 1.38679 1.41444 1.48866 1.73596 2.06954 2.20513 2.35816 2.43620 3.29822 3.35647 3.84901 3.95074 3.98411 4.08527 4.23129 4.28570 4.31716 4.60123 4.63103 4.69026 4.80491 4.82848 4.84924 4.89081 4.94937 5.04411 5.06550 5.12989 5.19063 5.30559 5.37912 5.48452 5.58768 5.72714 5.82550 5.95574 5.98091 6.43566 6.57185 6.92605 7.13733 7.62090 8.57146 9.26595 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015110 B = 0.005551 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.636044 B = 5042.484729 C = 6134.031168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.064 3.936 3 C -0.224 4.224 4 C -0.088 4.088 5 C -0.085 4.085 6 C -0.090 4.090 7 C 0.581 3.419 8 O -0.571 6.571 9 N -0.713 5.713 10 C 0.134 3.866 11 C 0.132 3.868 12 H 0.072 0.928 13 C -0.130 4.130 14 C 0.150 3.850 15 N -0.629 5.629 16 C -0.212 4.212 17 H 0.081 0.919 18 C -0.069 4.069 19 N -0.952 5.952 20 Si 0.965 3.035 21 H -0.270 1.270 22 H -0.291 1.291 23 H -0.299 1.299 24 N -0.533 5.533 25 H 0.423 0.577 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.100 0.900 29 H 0.165 0.835 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.084 0.916 33 H 0.401 0.599 34 H 0.082 0.918 35 H 0.043 0.957 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.024 0.976 39 H 0.038 0.962 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.599 12.806 -11.144 18.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.055 4.055 3 C -0.247 4.247 4 C -0.097 4.097 5 C -0.143 4.143 6 C -0.202 4.202 7 C 0.371 3.629 8 O -0.451 6.451 9 N -0.362 5.362 10 C 0.009 3.991 11 C 0.026 3.974 12 H 0.089 0.911 13 C -0.169 4.169 14 C 0.025 3.975 15 N -0.355 5.355 16 C -0.341 4.341 17 H 0.099 0.901 18 C -0.261 4.261 19 N -0.602 5.602 20 Si 0.795 3.205 21 H -0.194 1.194 22 H -0.218 1.218 23 H -0.227 1.227 24 N -0.131 5.131 25 H 0.261 0.739 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.119 0.881 29 H 0.182 0.818 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.235 0.765 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.113 0.887 37 H 0.096 0.904 38 H 0.042 0.958 39 H 0.057 0.943 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.944 12.944 -10.851 17.906 hybrid contribution -0.925 -0.847 1.252 1.772 sum -6.869 12.097 -9.599 16.902 Atomic orbital electron populations 1.20569 0.84790 1.04829 1.04381 1.21190 0.95313 0.85492 1.03462 1.20858 0.90813 0.99335 1.13711 1.20270 0.96829 0.91033 1.01614 1.20299 0.93887 0.98089 1.01977 1.20089 0.83425 0.94404 1.22263 1.17367 0.87742 0.81789 0.76010 1.90740 1.25623 1.75734 1.53050 1.45795 1.10643 1.05314 1.74439 1.21583 0.87448 0.88995 1.01061 1.22682 0.94788 0.91680 0.88244 0.91059 1.23562 0.96532 0.96901 0.99871 1.22172 0.91295 0.88733 0.95319 1.46403 1.61477 1.14024 1.13624 1.19265 1.23521 0.97632 0.93647 0.90128 1.25475 1.03133 0.96937 1.00590 1.70000 1.50928 1.10839 1.28413 0.85206 0.78013 0.77696 0.79623 1.19426 1.21775 1.22678 1.41972 1.04740 1.09399 1.56959 0.73862 0.88893 0.90771 0.88147 0.81750 0.91959 0.92301 0.89685 0.76450 0.89948 0.93896 0.88652 0.90385 0.95834 0.94322 0.94528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 10.41 71.24 0.74 -0.33 16 2 C 0.06 1.33 7.13 41.34 0.29 1.62 16 3 C -0.22 -5.10 10.66 22.01 0.23 -4.87 16 4 C -0.09 -2.55 6.21 -19.56 -0.12 -2.67 16 5 C -0.09 -2.29 9.83 71.24 0.70 -1.59 16 6 C -0.09 -2.80 7.06 40.34 0.28 -2.52 16 7 C 0.58 21.03 7.79 86.45 0.67 21.70 16 8 O -0.57 -23.82 14.80 -4.33 -0.06 -23.88 16 9 N -0.71 -24.10 5.52 -467.08 -2.58 -26.68 16 10 C 0.13 4.73 5.54 86.38 0.48 5.21 16 11 C 0.13 4.78 4.33 45.09 0.20 4.98 16 12 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 13 C -0.13 -4.44 7.86 31.26 0.25 -4.20 16 14 C 0.15 6.82 7.51 86.48 0.65 7.47 16 15 N -0.63 -30.08 3.57 -694.10 -2.48 -32.56 16 16 C -0.21 -11.30 10.51 84.03 0.88 -10.42 16 17 H 0.08 4.12 7.80 -2.91 -0.02 4.10 16 18 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 19 N -0.95 -56.92 11.39 21.65 0.25 -56.67 16 20 Si 0.96 45.78 29.55 68.60 2.03 47.81 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 23 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 24 N -0.53 -13.02 5.99 -171.93 -1.03 -14.05 16 25 H 0.42 8.76 8.19 -92.71 -0.76 8.00 16 26 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.06 1.83 6.49 -2.39 -0.02 1.81 16 32 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.40 12.40 7.60 -92.71 -0.70 11.69 16 34 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 35 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.08 2.68 8.10 -2.39 -0.02 2.66 16 38 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.04 2.02 7.16 -2.39 -0.02 2.00 16 40 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 Total: -1.00 -71.77 335.61 1.44 -70.33 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -0.41 Total: 24.70 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 5.73 Total: 11.00 kcal Atomic # 7 Polarization: -124.11 SS G_CDS: -5.85 Total: -129.96 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.06 Total: -23.88 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -71.77 1.44 -70.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038421192.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.604 kcal (2) G-P(sol) polarization free energy of solvation -71.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds