Wall clock time and date at job start Mon Mar 30 2020 02:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35452 * 125.56272 * 2 1 4 4 C 1.39837 * 107.86322 * 179.73649 * 3 2 1 5 5 C 1.50700 * 126.45711 * 180.24526 * 4 3 2 6 6 C 1.37873 * 107.08584 * 0.26450 * 4 3 2 7 7 C 1.46679 * 126.22996 * 179.97438 * 6 4 3 8 8 O 1.21693 * 120.00197 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99898 * 180.02562 * 7 6 4 10 10 C 1.46493 * 120.00183 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47142 * 180.02562 * 10 9 7 12 12 H 1.09002 * 112.73983 * 303.75778 * 11 10 9 13 13 C 1.53500 * 113.46800 * 172.93997 * 11 10 9 14 14 C 1.53499 * 83.34394 * 219.14785 * 13 11 10 15 15 N 1.47070 * 113.47034 * 74.50258 * 11 10 9 16 16 C 1.36932 * 136.05494 * 321.86831 * 15 11 10 17 17 H 1.07991 * 120.00243 * 359.97438 * 16 15 11 18 18 C 1.38813 * 119.99637 * 180.02562 * 16 15 11 19 19 N 1.31618 * 120.00163 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99848 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47350 * 89.99576 * 20 18 16 22 22 H 1.48500 * 109.46996 * 209.99980 * 20 18 16 23 23 H 1.48500 * 109.47202 * 329.99366 * 20 18 16 24 24 N 1.35530 * 125.56569 * 180.19972 * 2 1 3 25 25 H 0.97001 * 125.68420 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.47124 * 90.00228 * 1 2 3 27 27 H 1.09001 * 109.46682 * 209.99924 * 1 2 3 28 28 H 1.09003 * 109.47299 * 329.99427 * 1 2 3 29 29 H 1.08002 * 126.07027 * 0.02562 * 3 2 1 30 30 H 1.09001 * 109.47136 * 90.02019 * 5 4 3 31 31 H 1.09002 * 109.47537 * 210.02855 * 5 4 3 32 32 H 1.09004 * 109.46856 * 330.02579 * 5 4 3 33 33 H 0.97001 * 119.99593 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47072 * 299.99466 * 10 9 7 35 35 H 1.09003 * 109.47753 * 59.99787 * 10 9 7 36 36 H 1.08997 * 114.20844 * 332.73388 * 13 11 10 37 37 H 1.08997 * 114.20821 * 105.56171 * 13 11 10 38 38 H 1.08996 * 113.46552 * 271.28494 * 14 13 11 39 39 H 1.09005 * 113.46547 * 140.84414 * 14 13 11 40 40 H 0.97003 * 119.99966 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6767 0.0061 5 6 4.8485 1.5592 0.0135 6 6 3.6122 -0.7019 0.0037 7 6 4.7860 -1.5814 0.0077 8 8 5.9049 -1.1029 0.0133 9 7 4.6254 -2.9196 0.0041 10 6 5.7977 -3.7980 0.0086 11 6 5.3409 -5.2582 0.0025 12 1 4.6772 -5.4955 0.8340 13 6 6.4929 -6.2585 -0.1664 14 6 5.4817 -7.0006 -1.0512 15 7 4.8293 -5.7065 -1.3014 16 6 4.0763 -5.1597 -2.3060 17 1 3.7142 -4.1461 -2.2189 18 6 3.7776 -5.9089 -3.4358 19 7 4.2186 -7.1445 -3.5417 20 14 2.7510 -5.1628 -4.8066 21 1 3.6446 -4.4972 -5.7881 22 1 1.9796 -6.2342 -5.4864 23 1 1.8126 -4.1640 -4.2347 24 7 2.2953 -1.1025 -0.0038 25 1 1.9835 -2.0210 -0.0067 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.9544 2.1269 0.0004 30 1 5.1381 1.7702 1.0430 31 1 5.6667 1.0515 -0.4973 32 1 4.6243 2.4943 -0.4998 33 1 3.7335 -3.3009 -0.0008 34 1 6.4014 -3.6030 -0.8778 35 1 6.3919 -3.6066 0.9022 36 1 7.3530 -5.8626 -0.7062 37 1 6.7615 -6.7892 0.7470 38 1 4.8561 -7.7028 -0.5003 39 1 5.9270 -7.4418 -1.9430 40 1 4.0101 -7.6678 -4.3314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038421193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:22 Heat of formation + Delta-G solvation = 53.551225 kcal Electronic energy + Delta-G solvation = -21592.991758 eV Core-core repulsion = 18409.988323 eV Total energy + Delta-G solvation = -3183.003435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.32460 -39.01966 -37.96272 -34.23594 -32.60836 -32.29640 -31.53585 -28.35848 -27.93819 -27.55489 -25.75854 -23.53338 -22.27114 -20.95422 -20.33847 -19.50100 -18.97178 -18.14035 -16.66520 -15.55580 -15.47404 -15.22509 -14.99348 -14.29090 -14.07330 -13.79682 -13.47110 -13.21524 -13.16051 -12.91143 -12.84170 -12.66486 -12.24468 -11.97915 -11.89368 -11.58074 -11.40486 -11.16949 -11.03343 -10.83892 -10.61943 -10.05616 -9.89959 -9.69204 -9.26486 -8.88242 -8.70835 -8.66264 -7.89085 -6.96749 -5.83941 -3.16768 1.61144 2.74108 3.13136 3.31978 3.36769 3.39283 3.51357 3.66971 4.36602 4.77321 5.00714 5.07896 5.18677 5.27094 5.33821 5.38213 5.46318 5.51744 5.66911 5.71976 5.79913 5.85930 5.96248 6.00446 6.06647 6.22965 6.28775 6.35290 6.50097 6.54932 6.66946 6.78745 6.89412 7.05066 7.16162 7.33671 7.44122 7.51467 7.86858 7.90548 8.51363 8.95492 9.63022 10.56103 11.33107 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014950 B = 0.005684 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.454910 B = 4924.498994 C = 6062.094593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.048 3.952 3 C -0.211 4.211 4 C -0.079 4.079 5 C -0.087 4.087 6 C -0.051 4.051 7 C 0.584 3.416 8 O -0.538 6.538 9 N -0.715 5.715 10 C 0.123 3.877 11 C 0.126 3.874 12 H 0.047 0.953 13 C -0.160 4.160 14 C 0.151 3.849 15 N -0.601 5.601 16 C -0.216 4.216 17 H 0.078 0.922 18 C -0.005 4.005 19 N -0.916 5.916 20 Si 0.909 3.091 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.283 1.283 24 N -0.535 5.535 25 H 0.416 0.584 26 H 0.075 0.925 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.396 0.604 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.025 0.975 39 H 0.072 0.928 40 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.501 11.086 9.435 15.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 C -0.236 4.236 4 C -0.087 4.087 5 C -0.144 4.144 6 C -0.164 4.164 7 C 0.372 3.628 8 O -0.416 6.416 9 N -0.364 5.364 10 C -0.001 4.001 11 C 0.018 3.982 12 H 0.064 0.936 13 C -0.199 4.199 14 C 0.026 3.974 15 N -0.327 5.327 16 C -0.343 4.343 17 H 0.096 0.904 18 C -0.202 4.202 19 N -0.563 5.563 20 Si 0.739 3.261 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.209 1.209 24 N -0.132 5.132 25 H 0.254 0.746 26 H 0.094 0.906 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.157 0.843 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.229 0.771 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.091 0.909 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.867 11.219 9.091 14.949 hybrid contribution -1.421 -0.422 -0.827 1.697 sum -5.288 10.797 8.264 14.589 Atomic orbital electron populations 1.20399 0.87858 1.03371 1.03034 1.20478 0.93567 0.86290 1.06617 1.20511 0.91867 0.97713 1.13468 1.19885 0.95379 0.91071 1.02395 1.20311 0.94855 0.97369 1.01905 1.20318 0.82968 0.94270 1.18852 1.17047 0.87350 0.81623 0.76812 1.90766 1.24164 1.75215 1.51406 1.45862 1.10699 1.05415 1.74430 1.21826 0.87279 0.89523 1.01504 1.22432 0.94019 0.91093 0.90636 0.93561 1.23654 0.97403 0.98904 0.99946 1.22034 0.89974 0.89194 0.96227 1.45661 1.61711 1.11343 1.14027 1.18794 1.24978 0.96339 0.94233 0.90444 1.24768 1.01081 0.96126 0.98264 1.69823 1.49134 1.08461 1.28881 0.86188 0.79751 0.77769 0.82405 1.21439 1.21580 1.20905 1.41943 1.05554 1.08574 1.57128 0.74618 0.90643 0.91536 0.89947 0.84262 0.91817 0.90086 0.92305 0.77088 0.90890 0.92064 0.90117 0.92289 0.95731 0.90943 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 10.41 36.00 0.37 -0.36 16 2 C 0.05 0.58 7.13 -81.95 -0.58 -0.01 16 3 C -0.21 -2.71 10.66 -39.98 -0.43 -3.14 16 4 C -0.08 -1.19 6.21 -104.16 -0.65 -1.84 16 5 C -0.09 -1.20 9.83 36.01 0.35 -0.85 16 6 C -0.05 -0.83 7.06 -81.98 -0.58 -1.41 16 7 C 0.58 10.63 7.79 -12.85 -0.10 10.53 16 8 O -0.54 -11.05 14.80 5.20 0.08 -10.97 16 9 N -0.71 -12.45 5.33 -61.62 -0.33 -12.77 16 10 C 0.12 2.24 5.52 -4.05 -0.02 2.22 16 11 C 0.13 2.39 4.10 -72.39 -0.30 2.10 16 12 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 13 C -0.16 -2.88 8.03 -26.21 -0.21 -3.09 16 14 C 0.15 3.42 7.39 -8.50 -0.06 3.35 16 15 N -0.60 -14.44 3.65 -176.97 -0.65 -15.08 16 16 C -0.22 -5.73 10.55 -15.06 -0.16 -5.89 16 17 H 0.08 1.98 7.51 -52.49 -0.39 1.58 16 18 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 19 N -0.92 -26.64 11.51 55.49 0.64 -26.00 16 20 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 N -0.54 -7.13 5.99 -5.70 -0.03 -7.16 16 25 H 0.42 4.82 8.19 -40.82 -0.33 4.48 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.28 6.48 -51.93 -0.34 0.95 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.40 6.46 7.50 -40.82 -0.31 6.15 16 34 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 335.05 15.07 5.05 5.05 Total: -1.00 -32.21 335.05 -8.67 -40.88 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -5.95 Total: 7.81 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -2.45 Total: 1.38 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.37 Total: -61.02 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.21 -8.67 -40.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038421193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.434 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds