Wall clock time and date at job start Mon Mar 30 2020 02:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35452 * 125.56272 * 2 1 4 4 C 1.39837 * 107.86322 * 179.73649 * 3 2 1 5 5 C 1.50700 * 126.45711 * 180.24526 * 4 3 2 6 6 C 1.37873 * 107.08584 * 0.26450 * 4 3 2 7 7 C 1.46679 * 126.22996 * 179.97438 * 6 4 3 8 8 O 1.21693 * 120.00197 * 359.97438 * 7 6 4 9 9 N 1.34776 * 119.99898 * 180.02562 * 7 6 4 10 10 C 1.46493 * 120.00183 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47142 * 180.02562 * 10 9 7 12 12 H 1.09002 * 112.73983 * 303.75778 * 11 10 9 13 13 C 1.53500 * 113.46800 * 172.93997 * 11 10 9 14 14 C 1.53499 * 83.34394 * 219.14785 * 13 11 10 15 15 N 1.47070 * 113.47034 * 74.50258 * 11 10 9 16 16 C 1.36932 * 136.05494 * 321.86831 * 15 11 10 17 17 H 1.07991 * 120.00243 * 359.97438 * 16 15 11 18 18 C 1.38813 * 119.99637 * 180.02562 * 16 15 11 19 19 N 1.31618 * 120.00163 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99848 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47350 * 89.99576 * 20 18 16 22 22 H 1.48500 * 109.46996 * 209.99980 * 20 18 16 23 23 H 1.48500 * 109.47202 * 329.99366 * 20 18 16 24 24 N 1.35530 * 125.56569 * 180.19972 * 2 1 3 25 25 H 0.97001 * 125.68420 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.47124 * 90.00228 * 1 2 3 27 27 H 1.09001 * 109.46682 * 209.99924 * 1 2 3 28 28 H 1.09003 * 109.47299 * 329.99427 * 1 2 3 29 29 H 1.08002 * 126.07027 * 0.02562 * 3 2 1 30 30 H 1.09001 * 109.47136 * 90.02019 * 5 4 3 31 31 H 1.09002 * 109.47537 * 210.02855 * 5 4 3 32 32 H 1.09004 * 109.46856 * 330.02579 * 5 4 3 33 33 H 0.97001 * 119.99593 * 359.97438 * 9 7 6 34 34 H 1.09002 * 109.47072 * 299.99466 * 10 9 7 35 35 H 1.09003 * 109.47753 * 59.99787 * 10 9 7 36 36 H 1.08997 * 114.20844 * 332.73388 * 13 11 10 37 37 H 1.08997 * 114.20821 * 105.56171 * 13 11 10 38 38 H 1.08996 * 113.46552 * 271.28494 * 14 13 11 39 39 H 1.09005 * 113.46547 * 140.84414 * 14 13 11 40 40 H 0.97003 * 119.99966 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6767 0.0061 5 6 4.8485 1.5592 0.0135 6 6 3.6122 -0.7019 0.0037 7 6 4.7860 -1.5814 0.0077 8 8 5.9049 -1.1029 0.0133 9 7 4.6254 -2.9196 0.0041 10 6 5.7977 -3.7980 0.0086 11 6 5.3409 -5.2582 0.0025 12 1 4.6772 -5.4955 0.8340 13 6 6.4929 -6.2585 -0.1664 14 6 5.4817 -7.0006 -1.0512 15 7 4.8293 -5.7065 -1.3014 16 6 4.0763 -5.1597 -2.3060 17 1 3.7142 -4.1461 -2.2189 18 6 3.7776 -5.9089 -3.4358 19 7 4.2186 -7.1445 -3.5417 20 14 2.7510 -5.1628 -4.8066 21 1 3.6446 -4.4972 -5.7881 22 1 1.9796 -6.2342 -5.4864 23 1 1.8126 -4.1640 -4.2347 24 7 2.2953 -1.1025 -0.0038 25 1 1.9835 -2.0210 -0.0067 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8899 0.5139 29 1 1.9544 2.1269 0.0004 30 1 5.1381 1.7702 1.0430 31 1 5.6667 1.0515 -0.4973 32 1 4.6243 2.4943 -0.4998 33 1 3.7335 -3.3009 -0.0008 34 1 6.4014 -3.6030 -0.8778 35 1 6.3919 -3.6066 0.9022 36 1 7.3530 -5.8626 -0.7062 37 1 6.7615 -6.7892 0.7470 38 1 4.8561 -7.7028 -0.5003 39 1 5.9270 -7.4418 -1.9430 40 1 4.0101 -7.6678 -4.3314 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038421193.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:21 Heat of formation + Delta-G solvation = 31.974889 kcal Electronic energy + Delta-G solvation = -21593.927378 eV Core-core repulsion = 18409.988323 eV Total energy + Delta-G solvation = -3183.939055 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.39508 -40.50141 -39.53290 -35.68595 -34.29607 -33.65167 -32.49592 -30.04377 -29.52358 -28.57657 -26.93781 -25.42739 -23.78543 -22.26054 -21.34226 -21.13013 -20.26208 -19.40697 -18.43430 -17.15989 -16.99546 -16.49867 -16.38192 -15.86844 -15.40332 -15.33916 -14.84327 -14.63494 -14.30127 -13.92239 -13.88076 -13.63217 -13.56968 -13.36839 -13.07084 -13.00243 -12.91510 -12.76300 -12.63276 -12.40305 -12.33564 -11.88471 -11.66973 -11.27774 -10.91977 -10.82445 -10.13925 -9.72126 -8.96945 -8.92305 -7.91178 -5.22812 0.44120 1.38872 1.42432 1.48299 1.73812 2.07419 2.20773 2.36180 2.43299 3.31050 3.40709 3.83500 3.93698 3.95486 4.09428 4.23440 4.28780 4.30777 4.60877 4.63263 4.66887 4.80174 4.82290 4.85269 4.89226 4.95516 5.03543 5.06152 5.12820 5.19171 5.28938 5.38478 5.48525 5.55792 5.71739 5.82768 5.94116 5.98317 6.43597 6.57141 6.90149 7.13967 7.60386 8.60548 9.26307 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014950 B = 0.005684 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.454910 B = 4924.498994 C = 6062.094593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.064 3.936 3 C -0.223 4.223 4 C -0.088 4.088 5 C -0.085 4.085 6 C -0.090 4.090 7 C 0.581 3.419 8 O -0.571 6.571 9 N -0.712 5.712 10 C 0.132 3.868 11 C 0.133 3.867 12 H 0.070 0.930 13 C -0.134 4.134 14 C 0.143 3.857 15 N -0.629 5.629 16 C -0.208 4.208 17 H 0.083 0.917 18 C -0.068 4.068 19 N -0.952 5.952 20 Si 0.966 3.034 21 H -0.296 1.296 22 H -0.294 1.294 23 H -0.267 1.267 24 N -0.533 5.533 25 H 0.422 0.578 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.165 0.835 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.401 0.599 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.024 0.976 39 H 0.036 0.964 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.176 12.668 10.855 17.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.055 4.055 3 C -0.247 4.247 4 C -0.097 4.097 5 C -0.142 4.142 6 C -0.202 4.202 7 C 0.371 3.629 8 O -0.451 6.451 9 N -0.362 5.362 10 C 0.007 3.993 11 C 0.027 3.973 12 H 0.087 0.913 13 C -0.172 4.172 14 C 0.017 3.983 15 N -0.355 5.355 16 C -0.336 4.336 17 H 0.101 0.899 18 C -0.261 4.261 19 N -0.601 5.601 20 Si 0.795 3.205 21 H -0.223 1.223 22 H -0.221 1.221 23 H -0.191 1.191 24 N -0.131 5.131 25 H 0.261 0.739 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.123 0.877 29 H 0.183 0.817 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.235 0.765 34 H 0.061 0.939 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.042 0.958 39 H 0.054 0.946 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.554 12.807 10.550 17.498 hybrid contribution -0.922 -0.848 -1.194 1.731 sum -6.476 11.959 9.357 16.508 Atomic orbital electron populations 1.20570 0.84821 1.05113 1.04073 1.21188 0.95307 0.85499 1.03511 1.20857 0.90807 0.99319 1.13688 1.20271 0.96831 0.91013 1.01617 1.20297 0.93755 0.97902 1.02270 1.20097 0.83415 0.94417 1.22254 1.17373 0.87745 0.81794 0.76030 1.90738 1.25598 1.75724 1.53089 1.45803 1.10670 1.05318 1.74378 1.21637 0.87450 0.89196 1.01013 1.22577 0.94260 0.91657 0.88853 0.91273 1.23481 0.96037 0.97341 1.00387 1.22053 0.91303 0.89133 0.95791 1.45970 1.61463 1.12417 1.15633 1.19128 1.23415 0.96399 0.94674 0.89922 1.25501 1.03168 0.96758 1.00678 1.69999 1.51167 1.09739 1.29188 0.85263 0.78443 0.77072 0.79704 1.22323 1.22082 1.19133 1.41980 1.04776 1.09394 1.56941 0.73905 0.89777 0.90327 0.87748 0.81726 0.91137 0.92750 0.90022 0.76472 0.93909 0.90060 0.90289 0.88080 0.95782 0.94590 0.94498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 10.41 71.24 0.74 -0.36 16 2 C 0.06 1.34 7.13 41.34 0.29 1.63 16 3 C -0.22 -5.13 10.66 22.01 0.23 -4.90 16 4 C -0.09 -2.56 6.21 -19.56 -0.12 -2.68 16 5 C -0.09 -2.29 9.83 71.24 0.70 -1.59 16 6 C -0.09 -2.83 7.06 40.35 0.28 -2.54 16 7 C 0.58 21.16 7.79 86.45 0.67 21.83 16 8 O -0.57 -23.89 14.80 -4.32 -0.06 -23.96 16 9 N -0.71 -24.38 5.33 -467.09 -2.49 -26.87 16 10 C 0.13 4.67 5.52 86.38 0.48 5.15 16 11 C 0.13 4.83 4.10 41.79 0.17 5.00 16 12 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 13 C -0.13 -4.56 8.03 30.93 0.25 -4.31 16 14 C 0.14 6.46 7.39 83.18 0.61 7.07 16 15 N -0.63 -30.06 3.65 -713.81 -2.61 -32.67 16 16 C -0.21 -11.03 10.55 84.03 0.89 -10.15 16 17 H 0.08 4.19 7.51 -2.92 -0.02 4.17 16 18 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 19 N -0.95 -56.84 11.51 21.65 0.25 -56.59 16 20 Si 0.97 45.49 29.55 68.60 2.03 47.52 16 21 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 22 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 N -0.53 -13.26 5.99 -171.93 -1.03 -14.29 16 25 H 0.42 9.04 8.19 -92.71 -0.76 8.28 16 26 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.75 6.48 -2.39 -0.02 1.74 16 32 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.40 12.70 7.50 -92.71 -0.70 12.00 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.08 2.74 8.12 -2.39 -0.02 2.72 16 37 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.04 1.88 7.12 -2.38 -0.02 1.86 16 40 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -71.40 335.05 1.36 -70.03 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: -0.40 Total: 26.01 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: 5.67 Total: 10.82 kcal Atomic # 7 Polarization: -124.54 SS G_CDS: -5.88 Total: -130.42 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.06 Total: -23.96 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -71.40 1.36 -70.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038421193.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.007 kcal (2) G-P(sol) polarization free energy of solvation -71.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds