Wall clock time and date at job start Mon Mar 30 2020 01:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36763 * 125.80106 * 2 1 4 4 C 1.47268 * 126.94369 * 0.02562 * 3 2 1 5 5 O 1.21631 * 119.99903 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00002 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99635 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.46686 * 179.97438 * 7 6 4 9 9 H 1.08997 * 112.73936 * 56.23765 * 8 7 6 10 10 C 1.53503 * 113.46543 * 187.05641 * 8 7 6 11 11 C 1.53491 * 83.34226 * 140.84612 * 10 8 7 12 12 N 1.47064 * 113.46624 * 285.49127 * 8 7 6 13 13 C 1.36933 * 136.05760 * 38.07124 * 12 8 7 14 14 H 1.07998 * 119.99985 * 359.97438 * 13 12 8 15 15 C 1.38813 * 119.99965 * 179.97438 * 13 12 8 16 16 N 1.31619 * 120.00303 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99898 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46642 * 90.00448 * 17 15 13 19 19 H 1.48499 * 109.47036 * 209.99982 * 17 15 13 20 20 H 1.48500 * 109.47276 * 330.00545 * 17 15 13 21 21 C 1.46684 * 106.12016 * 180.02562 * 3 2 1 22 22 C 1.34496 * 106.32792 * 0.02562 * 21 3 2 23 23 N 1.34658 * 125.80051 * 179.68845 * 2 1 3 24 24 C 1.46502 * 124.85177 * 0.02562 * 23 2 1 25 25 H 1.09002 * 109.47152 * 89.99942 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00042 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00023 * 1 2 3 28 28 H 0.96997 * 120.00371 * 359.97438 * 6 4 3 29 29 H 1.08996 * 109.46975 * 299.99457 * 7 6 4 30 30 H 1.08996 * 109.47484 * 59.99639 * 7 6 4 31 31 H 1.08993 * 114.20593 * 254.43869 * 10 8 7 32 32 H 1.09000 * 114.20342 * 27.26208 * 10 8 7 33 33 H 1.09001 * 113.47247 * 219.14963 * 11 10 8 34 34 H 1.09005 * 113.46852 * 88.71088 * 11 10 8 35 35 H 0.96994 * 120.00249 * 180.02562 * 16 15 13 36 36 H 1.08001 * 126.84178 * 179.97438 * 21 3 2 37 37 H 1.08002 * 125.57077 * 180.02562 * 22 21 3 38 38 H 1.08994 * 109.46992 * 89.99618 * 24 23 2 39 39 H 1.08999 * 109.46435 * 209.99360 * 24 23 2 40 40 H 1.08993 * 109.46927 * 329.99308 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8702 2.5156 0.0005 5 8 0.6839 2.7839 0.0006 6 7 2.7850 3.5054 -0.0001 7 6 2.3503 4.9045 -0.0001 8 6 3.5767 5.8194 -0.0002 9 1 4.2484 5.6236 -0.8359 10 6 3.2310 7.3050 0.1727 11 6 4.4904 7.3121 1.0501 12 7 4.2616 5.8809 1.2998 13 6 4.5560 4.9954 2.3019 14 1 4.2527 3.9624 2.2162 15 6 5.2443 5.4255 3.4281 16 7 5.6134 6.6845 3.5329 17 14 5.6453 4.2177 4.7955 18 1 6.9663 3.5925 4.5320 19 1 5.6881 4.9366 6.0942 20 1 4.6004 3.1638 4.8473 21 6 3.6882 0.6152 -0.0006 22 6 3.6095 -0.7274 -0.0015 23 7 2.2947 -1.0921 0.0059 24 6 1.8094 -2.4744 0.0129 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 3.7311 3.2915 -0.0005 29 1 1.7515 5.0988 -0.8899 30 1 1.7522 5.0992 0.8900 31 1 3.3190 7.8935 -0.7404 32 1 2.3052 7.4878 0.7183 33 1 4.3938 7.9294 1.9433 34 1 5.4057 7.5147 0.4940 35 1 6.0947 6.9849 4.3196 36 1 4.5890 1.2110 -0.0012 37 1 4.4498 -1.4060 -0.0018 38 1 1.6893 -2.8225 -1.0130 39 1 2.5287 -3.1093 0.5302 40 1 0.8492 -2.5197 0.5267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038671929.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:01 Heat of formation + Delta-G solvation = 68.298163 kcal Electronic energy + Delta-G solvation = -21540.751616 eV Core-core repulsion = 18358.387656 eV Total energy + Delta-G solvation = -3182.363960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.26002 -38.87401 -37.80860 -33.86035 -32.78975 -32.12791 -31.50593 -28.27007 -27.80879 -26.36415 -25.98115 -23.40315 -22.46514 -21.41110 -19.83514 -19.32351 -18.72757 -17.35051 -16.54330 -15.71696 -15.53029 -15.29268 -15.09147 -14.30772 -14.16710 -13.81242 -13.48286 -13.24452 -13.02112 -12.83874 -12.74130 -12.57337 -12.47251 -12.09339 -11.74656 -11.45578 -11.43407 -11.04021 -10.89555 -10.70437 -10.51205 -9.90772 -9.76311 -9.44997 -9.08368 -8.75098 -8.58947 -8.34170 -8.00038 -6.83422 -5.70897 -3.02822 1.95502 2.53709 2.78847 3.41996 3.47958 3.49961 3.91429 4.02128 4.49646 4.55646 4.77621 4.86373 4.95907 5.08695 5.26471 5.27821 5.44584 5.50743 5.60800 5.64904 5.69649 5.85149 6.01133 6.02144 6.04905 6.21758 6.31227 6.43142 6.50035 6.67186 6.83314 6.87708 7.08888 7.15428 7.26935 7.30163 7.46633 7.64370 8.04021 8.21352 8.87956 9.09961 9.76648 10.69604 11.46532 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016929 B = 0.005265 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.556061 B = 5316.896974 C = 6452.532181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.096 3.904 3 C -0.229 4.229 4 C 0.587 3.413 5 O -0.565 6.565 6 N -0.709 5.709 7 C 0.124 3.876 8 C 0.127 3.873 9 H 0.048 0.952 10 C -0.161 4.161 11 C 0.151 3.849 12 N -0.601 5.601 13 C -0.209 4.209 14 H 0.082 0.918 15 C -0.008 4.008 16 N -0.920 5.920 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.291 1.291 20 H -0.280 1.280 21 C -0.161 4.161 22 C -0.024 4.024 23 N -0.449 5.449 24 C 0.070 3.930 25 H 0.074 0.926 26 H 0.102 0.898 27 H 0.058 0.942 28 H 0.402 0.598 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.024 0.976 35 H 0.252 0.748 36 H 0.147 0.853 37 H 0.165 0.835 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.128 -14.634 -9.454 18.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.020 4.020 3 C -0.239 4.239 4 C 0.376 3.624 5 O -0.446 6.446 6 N -0.358 5.358 7 C -0.001 4.001 8 C 0.019 3.981 9 H 0.065 0.935 10 C -0.200 4.200 11 C 0.026 3.974 12 N -0.327 5.327 13 C -0.337 4.337 14 H 0.100 0.900 15 C -0.205 4.205 16 N -0.568 5.568 17 Si 0.737 3.263 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.206 1.206 21 C -0.185 4.185 22 C -0.150 4.150 23 N -0.126 5.126 24 C -0.072 4.072 25 H 0.092 0.908 26 H 0.120 0.880 27 H 0.077 0.923 28 H 0.237 0.763 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.165 0.835 37 H 0.183 0.817 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.902 -14.874 -9.100 18.753 hybrid contribution 1.126 -0.880 0.801 1.638 sum -5.776 -15.754 -8.299 18.720 Atomic orbital electron populations 1.20534 0.87277 1.03915 1.03052 1.20272 0.93653 0.85182 1.02861 1.20240 0.93155 0.92304 1.18152 1.17317 0.85366 0.84035 0.75716 1.90675 1.16774 1.84599 1.52599 1.45724 1.09837 1.06126 1.74108 1.21743 0.97657 0.79552 1.01111 1.22417 0.91853 0.93144 0.90648 0.93509 1.23656 1.00959 0.95526 0.99874 1.22026 0.91879 0.87311 0.96215 1.45676 1.65459 1.07040 1.14511 1.18900 1.30022 0.90537 0.94218 0.90044 1.24753 1.00967 0.96414 0.98341 1.69827 1.43826 1.13968 1.29141 0.86190 0.78174 0.80103 0.81811 1.21711 1.21718 1.20598 1.22112 0.96103 0.93556 1.06771 1.21640 0.85237 0.96247 1.11834 1.43500 1.06058 1.05914 1.57170 1.22042 1.01615 0.80354 1.03216 0.90777 0.87982 0.92307 0.76343 0.92460 0.91266 0.92405 0.90221 0.91031 0.95813 0.93793 0.83524 0.81748 0.90918 0.89757 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 9.52 36.01 0.34 -0.76 16 2 C 0.10 1.38 6.89 -81.88 -0.56 0.82 16 3 C -0.23 -3.84 6.29 -103.35 -0.65 -4.49 16 4 C 0.59 11.33 7.81 -12.59 -0.10 11.24 16 5 O -0.57 -12.03 14.81 5.25 0.08 -11.95 16 6 N -0.71 -13.43 5.33 -61.43 -0.33 -13.76 16 7 C 0.12 2.40 5.52 -4.04 -0.02 2.38 16 8 C 0.13 2.55 4.10 -72.40 -0.30 2.26 16 9 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 10 C -0.16 -3.03 8.03 -26.22 -0.21 -3.24 16 11 C 0.15 3.55 7.39 -8.51 -0.06 3.48 16 12 N -0.60 -15.05 3.65 -177.00 -0.65 -15.69 16 13 C -0.21 -5.76 10.55 -15.06 -0.16 -5.92 16 14 H 0.08 2.18 7.51 -52.49 -0.39 1.79 16 15 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 16 N -0.92 -27.47 11.51 55.49 0.64 -26.83 16 17 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 C -0.16 -2.35 10.56 -37.50 -0.40 -2.75 16 22 C -0.02 -0.29 11.34 -16.82 -0.19 -0.48 16 23 N -0.45 -5.21 3.09 -119.88 -0.37 -5.58 16 24 C 0.07 0.47 10.82 59.85 0.65 1.12 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.10 1.50 6.46 -51.93 -0.34 1.16 16 27 H 0.06 0.54 6.91 -51.93 -0.36 0.18 16 28 H 0.40 7.36 7.50 -40.82 -0.31 7.06 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.50 8.12 -51.93 -0.42 1.07 16 33 H 0.07 1.87 7.12 -51.93 -0.37 1.50 16 34 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.15 2.01 7.70 -52.49 -0.40 1.60 16 37 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.42 8.13 -51.93 -0.42 0.00 16 40 H 0.08 0.48 6.87 -51.93 -0.36 0.12 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -34.16 333.27 -8.27 -42.43 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -5.89 Total: 5.55 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -1.76 Total: 3.31 kcal Atomic # 7 Polarization: -61.16 SS G_CDS: -0.71 Total: -61.86 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.95 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.16 -8.27 -42.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038671929.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.733 kcal (2) G-P(sol) polarization free energy of solvation -34.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds