Wall clock time and date at job start Mon Mar 30 2020 01:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36763 * 125.80106 * 2 1 4 4 C 1.47268 * 126.94369 * 0.02562 * 3 2 1 5 5 O 1.21631 * 119.99903 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00002 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99635 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.46686 * 179.97438 * 7 6 4 9 9 H 1.08997 * 112.73936 * 56.23765 * 8 7 6 10 10 C 1.53503 * 113.46543 * 187.05641 * 8 7 6 11 11 C 1.53491 * 83.34226 * 140.84612 * 10 8 7 12 12 N 1.47064 * 113.46624 * 285.49127 * 8 7 6 13 13 C 1.36933 * 136.05760 * 38.07124 * 12 8 7 14 14 H 1.07998 * 119.99985 * 359.97438 * 13 12 8 15 15 C 1.38813 * 119.99965 * 179.97438 * 13 12 8 16 16 N 1.31619 * 120.00303 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99898 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46642 * 90.00448 * 17 15 13 19 19 H 1.48499 * 109.47036 * 209.99982 * 17 15 13 20 20 H 1.48500 * 109.47276 * 330.00545 * 17 15 13 21 21 C 1.46684 * 106.12016 * 180.02562 * 3 2 1 22 22 C 1.34496 * 106.32792 * 0.02562 * 21 3 2 23 23 N 1.34658 * 125.80051 * 179.68845 * 2 1 3 24 24 C 1.46502 * 124.85177 * 0.02562 * 23 2 1 25 25 H 1.09002 * 109.47152 * 89.99942 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00042 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00023 * 1 2 3 28 28 H 0.96997 * 120.00371 * 359.97438 * 6 4 3 29 29 H 1.08996 * 109.46975 * 299.99457 * 7 6 4 30 30 H 1.08996 * 109.47484 * 59.99639 * 7 6 4 31 31 H 1.08993 * 114.20593 * 254.43869 * 10 8 7 32 32 H 1.09000 * 114.20342 * 27.26208 * 10 8 7 33 33 H 1.09001 * 113.47247 * 219.14963 * 11 10 8 34 34 H 1.09005 * 113.46852 * 88.71088 * 11 10 8 35 35 H 0.96994 * 120.00249 * 180.02562 * 16 15 13 36 36 H 1.08001 * 126.84178 * 179.97438 * 21 3 2 37 37 H 1.08002 * 125.57077 * 180.02562 * 22 21 3 38 38 H 1.08994 * 109.46992 * 89.99618 * 24 23 2 39 39 H 1.08999 * 109.46435 * 209.99360 * 24 23 2 40 40 H 1.08993 * 109.46927 * 329.99308 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8702 2.5156 0.0005 5 8 0.6839 2.7839 0.0006 6 7 2.7850 3.5054 -0.0001 7 6 2.3503 4.9045 -0.0001 8 6 3.5767 5.8194 -0.0002 9 1 4.2484 5.6236 -0.8359 10 6 3.2310 7.3050 0.1727 11 6 4.4904 7.3121 1.0501 12 7 4.2616 5.8809 1.2998 13 6 4.5560 4.9954 2.3019 14 1 4.2527 3.9624 2.2162 15 6 5.2443 5.4255 3.4281 16 7 5.6134 6.6845 3.5329 17 14 5.6453 4.2177 4.7955 18 1 6.9663 3.5925 4.5320 19 1 5.6881 4.9366 6.0942 20 1 4.6004 3.1638 4.8473 21 6 3.6882 0.6152 -0.0006 22 6 3.6095 -0.7274 -0.0015 23 7 2.2947 -1.0921 0.0059 24 6 1.8094 -2.4744 0.0129 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 3.7311 3.2915 -0.0005 29 1 1.7515 5.0988 -0.8899 30 1 1.7522 5.0992 0.8900 31 1 3.3190 7.8935 -0.7404 32 1 2.3052 7.4878 0.7183 33 1 4.3938 7.9294 1.9433 34 1 5.4057 7.5147 0.4940 35 1 6.0947 6.9849 4.3196 36 1 4.5890 1.2110 -0.0012 37 1 4.4498 -1.4060 -0.0018 38 1 1.6893 -2.8225 -1.0130 39 1 2.5287 -3.1093 0.5302 40 1 0.8492 -2.5197 0.5267 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038671929.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:01 Heat of formation + Delta-G solvation = 45.579884 kcal Electronic energy + Delta-G solvation = -21541.736754 eV Core-core repulsion = 18358.387656 eV Total energy + Delta-G solvation = -3183.349098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.26214 -40.44727 -39.44993 -35.41350 -34.23971 -33.65055 -32.50773 -30.00381 -29.50746 -27.19689 -27.13097 -25.37690 -23.91386 -22.79993 -21.20923 -20.84841 -20.01074 -18.70172 -18.15409 -17.08012 -16.87259 -16.66726 -16.53538 -15.96652 -15.57446 -15.34193 -14.93340 -14.65886 -14.16697 -14.04490 -13.85319 -13.60817 -13.56968 -13.29587 -13.12743 -12.96530 -12.83333 -12.67003 -12.56168 -12.44810 -12.33387 -11.82665 -11.61502 -11.16230 -10.84671 -10.68876 -9.97961 -9.48269 -9.08785 -8.87079 -7.85880 -5.17080 0.77904 1.43119 1.44951 1.51570 1.53221 1.92066 2.44925 2.55459 2.64853 3.36313 3.47875 3.85575 3.91833 3.98795 4.04775 4.15577 4.24840 4.36814 4.43344 4.45597 4.65739 4.67469 4.72457 4.73657 4.75733 4.90614 4.99030 5.06804 5.08691 5.11881 5.28773 5.35353 5.56766 5.63869 5.76596 5.80099 5.99273 6.10896 6.39157 6.74811 6.96688 7.41262 7.65914 8.65923 9.31819 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016929 B = 0.005265 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.556061 B = 5316.896974 C = 6452.532181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.095 3.905 3 C -0.274 4.274 4 C 0.580 3.420 5 O -0.595 6.595 6 N -0.711 5.711 7 C 0.133 3.867 8 C 0.132 3.868 9 H 0.067 0.933 10 C -0.133 4.133 11 C 0.144 3.856 12 N -0.629 5.629 13 C -0.204 4.204 14 H 0.082 0.918 15 C -0.070 4.070 16 N -0.954 5.954 17 Si 0.967 3.033 18 H -0.283 1.283 19 H -0.297 1.297 20 H -0.277 1.277 21 C -0.191 4.191 22 C -0.007 4.007 23 N -0.442 5.442 24 C 0.059 3.941 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.404 0.596 29 H 0.077 0.923 30 H 0.039 0.961 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.023 0.977 35 H 0.245 0.755 36 H 0.145 0.855 37 H 0.203 0.797 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.394 -17.405 -10.664 21.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.024 4.024 3 C -0.284 4.284 4 C 0.371 3.629 5 O -0.479 6.479 6 N -0.359 5.359 7 C 0.008 3.992 8 C 0.026 3.974 9 H 0.085 0.915 10 C -0.172 4.172 11 C 0.018 3.982 12 N -0.355 5.355 13 C -0.333 4.333 14 H 0.100 0.900 15 C -0.263 4.263 16 N -0.604 5.604 17 Si 0.797 3.203 18 H -0.210 1.210 19 H -0.224 1.224 20 H -0.202 1.202 21 C -0.214 4.214 22 C -0.133 4.133 23 N -0.118 5.118 24 C -0.081 4.081 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.110 0.890 28 H 0.239 0.761 29 H 0.095 0.905 30 H 0.057 0.943 31 H 0.119 0.881 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.163 0.837 37 H 0.220 0.780 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.172 -17.683 -10.347 21.707 hybrid contribution 1.166 -0.106 1.100 1.606 sum -6.006 -17.789 -9.247 20.930 Atomic orbital electron populations 1.20507 0.86167 1.04015 1.03694 1.20522 0.94561 0.85560 1.01759 1.20272 0.95027 0.91519 1.21603 1.17800 0.84952 0.85250 0.74900 1.90641 1.17825 1.85270 1.54139 1.45725 1.09969 1.05960 1.74274 1.21555 0.97069 0.80015 1.00526 1.22566 0.91692 0.94234 0.88892 0.91522 1.23476 0.98360 0.94968 1.00386 1.22046 0.94172 0.86167 0.95804 1.45992 1.65865 1.07582 1.16052 1.19180 1.28309 0.90980 0.94813 0.89985 1.25497 1.02071 0.97947 1.00738 1.70005 1.45331 1.15544 1.29486 0.85228 0.78075 0.78134 0.78880 1.20985 1.22354 1.20203 1.22234 0.95239 0.95056 1.08908 1.22184 0.86375 0.95808 1.08974 1.43835 1.05663 1.07156 1.55114 1.22455 1.02860 0.77680 1.05062 0.89796 0.91020 0.88982 0.76132 0.90518 0.94296 0.88089 0.90281 0.94513 0.95885 0.94572 0.83721 0.77974 0.89023 0.87434 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.99 9.52 71.24 0.68 -1.31 16 2 C 0.09 2.57 6.89 41.78 0.29 2.86 16 3 C -0.27 -9.19 6.29 -19.04 -0.12 -9.31 16 4 C 0.58 22.87 7.81 86.62 0.68 23.55 16 5 O -0.59 -26.03 14.81 -4.13 -0.06 -26.09 16 6 N -0.71 -27.24 5.33 -466.51 -2.49 -29.72 16 7 C 0.13 5.15 5.52 86.38 0.48 5.63 16 8 C 0.13 5.20 4.10 41.79 0.17 5.37 16 9 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 10 C -0.13 -4.81 8.03 30.93 0.25 -4.56 16 11 C 0.14 6.79 7.39 83.17 0.61 7.40 16 12 N -0.63 -31.77 3.65 -713.90 -2.61 -34.38 16 13 C -0.20 -11.42 10.55 84.03 0.89 -10.54 16 14 H 0.08 4.46 7.51 -2.91 -0.02 4.44 16 15 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 16 N -0.95 -58.60 11.51 21.65 0.25 -58.36 16 17 Si 0.97 47.21 29.55 68.60 2.03 49.24 16 18 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 19 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 C -0.19 -5.41 10.56 23.62 0.25 -5.16 16 22 C -0.01 -0.15 11.34 83.12 0.94 0.79 16 23 N -0.44 -8.88 3.09 -533.20 -1.65 -10.52 16 24 C 0.06 0.54 10.82 127.77 1.38 1.92 16 25 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.07 2.13 6.46 -2.39 -0.02 2.11 16 27 H 0.09 1.43 6.91 -2.38 -0.02 1.42 16 28 H 0.40 14.99 7.50 -92.71 -0.70 14.29 16 29 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.10 2.83 8.14 -2.39 -0.02 2.82 16 32 H 0.08 2.88 8.12 -2.39 -0.02 2.86 16 33 H 0.04 1.98 7.12 -2.39 -0.02 1.96 16 34 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 36 H 0.15 3.96 7.70 -2.91 -0.02 3.93 16 37 H 0.20 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.11 0.54 8.13 -2.39 -0.02 0.52 16 40 H 0.10 0.68 6.87 -2.39 -0.02 0.66 16 Total: -1.00 -76.92 333.27 2.79 -74.13 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.35 Total: 22.65 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 6.96 Total: 13.04 kcal Atomic # 7 Polarization: -126.49 SS G_CDS: -6.49 Total: -132.98 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.06 Total: -26.09 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Total: -76.92 2.79 -74.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038671929.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.713 kcal (2) G-P(sol) polarization free energy of solvation -76.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds