Wall clock time and date at job start Mon Mar 30 2020 01:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36766 * 125.80488 * 2 1 4 4 C 1.47269 * 126.94018 * 359.97438 * 3 2 1 5 5 O 1.21620 * 119.99945 * 359.70590 * 4 3 2 6 6 N 1.34771 * 119.99688 * 179.71274 * 4 3 2 7 7 C 1.46505 * 119.99622 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 6 4 9 9 H 1.09002 * 112.96693 * 306.67860 * 8 7 6 10 10 C 1.53944 * 113.77224 * 175.00107 * 8 7 6 11 11 C 1.53950 * 86.29079 * 222.09231 * 10 8 7 12 12 N 1.47585 * 113.77049 * 78.49995 * 8 7 6 13 13 C 1.36932 * 134.49495 * 318.94949 * 12 8 7 14 14 H 1.08007 * 119.99670 * 359.97438 * 13 12 8 15 15 C 1.38814 * 120.00453 * 179.97438 * 13 12 8 16 16 N 1.31623 * 119.99581 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00371 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46974 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47039 * 119.99851 * 17 15 13 20 20 H 1.48494 * 109.47110 * 240.00230 * 17 15 13 21 21 C 1.46686 * 106.11926 * 179.71637 * 3 2 1 22 22 C 1.34495 * 106.33180 * 0.26102 * 21 3 2 23 23 N 1.34659 * 125.80151 * 180.16498 * 2 1 3 24 24 C 1.46501 * 124.84903 * 0.02562 * 23 2 1 25 25 H 1.09005 * 109.47207 * 89.99824 * 1 2 3 26 26 H 1.09004 * 109.47194 * 209.99890 * 1 2 3 27 27 H 1.09005 * 109.47189 * 329.99731 * 1 2 3 28 28 H 0.96996 * 120.00772 * 359.97438 * 6 4 3 29 29 H 1.09002 * 109.47068 * 299.99729 * 7 6 4 30 30 H 1.09001 * 109.47372 * 59.99816 * 7 6 4 31 31 H 1.09005 * 113.73705 * 336.43429 * 10 8 7 32 32 H 1.08994 * 113.74699 * 107.63859 * 10 8 7 33 33 H 1.08997 * 113.77044 * 137.90682 * 11 10 8 34 34 H 1.08997 * 113.76603 * 269.19409 * 11 10 8 35 35 H 0.97001 * 120.00214 * 180.02562 * 16 15 13 36 36 H 1.07999 * 126.84104 * 180.22772 * 21 3 2 37 37 H 1.07994 * 125.57139 * 180.02562 * 22 21 3 38 38 H 1.09004 * 109.47185 * 270.30635 * 24 23 2 39 39 H 1.08993 * 109.47775 * 30.30798 * 24 23 2 40 40 H 1.09012 * 109.47248 * 150.31391 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6840 2.7839 -0.0064 6 7 2.7850 3.5053 0.0054 7 6 2.3504 4.9044 0.0043 8 6 3.5766 5.8193 0.0125 9 1 4.2713 5.5923 0.8213 10 6 3.2354 7.3154 -0.1107 11 6 4.4269 7.4047 -1.0815 12 7 4.2223 5.9606 -1.3071 13 6 4.5141 5.0983 -2.3300 14 1 4.2517 4.0539 -2.2472 15 6 5.1470 5.5664 -3.4733 16 7 5.4663 6.8394 -3.5743 17 14 5.5457 4.3900 -4.8683 18 1 5.0861 3.0240 -4.5105 19 1 4.8548 4.8361 -6.1048 20 1 7.0126 4.3747 -5.0990 21 6 3.6882 0.6151 0.0070 22 6 3.6095 -0.7276 0.0047 23 7 2.2947 -1.0921 -0.0031 24 6 1.8093 -2.4744 -0.0077 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 3.7311 3.2914 0.0104 29 1 1.7568 5.0998 -0.8888 30 1 1.7470 5.0982 0.8912 31 1 2.2710 7.5083 -0.5807 32 1 3.3773 7.8755 0.8135 33 1 4.2322 8.0187 -1.9607 34 1 5.3724 7.6455 -0.5955 35 1 5.9083 7.1666 -4.3733 36 1 4.5890 1.2108 0.0123 37 1 4.4497 -1.4061 0.0088 38 1 1.6833 -2.8186 1.0189 39 1 0.8520 -2.5217 -0.5267 40 1 2.5315 -3.1115 -0.5184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038671931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:04 Heat of formation + Delta-G solvation = 64.389876 kcal Electronic energy + Delta-G solvation = -21501.969898 eV Core-core repulsion = 18319.436462 eV Total energy + Delta-G solvation = -3182.533436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.26845 -38.81737 -37.67103 -33.87648 -32.79695 -32.08435 -31.51215 -28.27971 -27.75972 -26.37010 -26.01592 -23.29082 -22.56226 -21.47869 -19.84995 -19.27396 -18.67920 -17.35739 -16.52828 -15.69368 -15.55661 -15.29427 -15.08829 -14.30150 -14.17732 -13.78917 -13.50459 -13.24274 -13.05771 -12.86436 -12.70512 -12.64115 -12.51085 -12.06868 -11.71530 -11.46805 -11.34422 -11.01883 -10.93978 -10.68410 -10.45070 -9.91275 -9.67083 -9.51086 -9.18376 -8.73288 -8.60420 -8.35663 -8.01292 -6.81741 -5.69537 -3.01253 1.94238 2.52621 2.78015 3.42638 3.49081 3.50978 3.90087 4.00782 4.50373 4.54871 4.76803 4.87411 4.94848 5.10628 5.20345 5.23582 5.44058 5.51016 5.61147 5.69723 5.70427 5.83747 6.00548 6.01583 6.03374 6.20214 6.30156 6.43472 6.49341 6.70424 6.83715 6.86558 7.07715 7.14483 7.26090 7.33022 7.49234 7.67204 8.06046 8.19712 8.86692 9.12476 9.78610 10.67036 11.47467 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017135 B = 0.005154 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.718672 B = 5431.386052 C = 6528.953898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.097 3.903 3 C -0.229 4.229 4 C 0.587 3.413 5 O -0.564 6.564 6 N -0.710 5.710 7 C 0.126 3.874 8 C 0.126 3.874 9 H 0.049 0.951 10 C -0.156 4.156 11 C 0.159 3.841 12 N -0.602 5.602 13 C -0.214 4.214 14 H 0.081 0.919 15 C -0.009 4.009 16 N -0.921 5.921 17 Si 0.905 3.095 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.292 1.292 21 C -0.162 4.162 22 C -0.024 4.024 23 N -0.449 5.449 24 C 0.070 3.930 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.101 0.899 28 H 0.401 0.599 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.026 0.974 35 H 0.251 0.749 36 H 0.147 0.853 37 H 0.165 0.835 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.847 -15.029 9.783 18.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.019 4.019 3 C -0.239 4.239 4 C 0.376 3.624 5 O -0.446 6.446 6 N -0.359 5.359 7 C 0.001 3.999 8 C 0.018 3.982 9 H 0.066 0.934 10 C -0.195 4.195 11 C 0.033 3.967 12 N -0.328 5.328 13 C -0.341 4.341 14 H 0.098 0.902 15 C -0.205 4.205 16 N -0.569 5.569 17 Si 0.736 3.264 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.219 1.219 21 C -0.186 4.186 22 C -0.149 4.149 23 N -0.127 5.127 24 C -0.072 4.072 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.120 0.880 28 H 0.236 0.764 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.061 0.939 36 H 0.164 0.836 37 H 0.182 0.818 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.633 -15.251 9.448 19.128 hybrid contribution 1.123 -0.870 -0.888 1.675 sum -5.510 -16.121 8.560 19.066 Atomic orbital electron populations 1.20525 0.87261 1.03783 1.03228 1.20277 0.93656 0.85169 1.02826 1.20242 0.93157 0.92308 1.18143 1.17308 0.85363 0.84021 0.75716 1.90675 1.16772 1.84591 1.52525 1.45721 1.09799 1.06149 1.74186 1.21697 0.97525 0.79438 1.01228 1.22507 0.92109 0.93424 0.90125 0.93367 1.23770 1.01063 0.95150 0.99500 1.22192 0.92338 0.86844 0.95292 1.46082 1.68681 1.05902 1.12172 1.19040 1.31757 0.90505 0.92829 0.90174 1.24739 1.01321 0.96255 0.98200 1.69833 1.46425 1.12494 1.28159 0.86132 0.77588 0.80093 0.82560 1.20451 1.21842 1.21897 1.22106 0.96089 0.93555 1.06835 1.21638 0.85250 0.96246 1.11786 1.43504 1.06053 1.05914 1.57200 1.22038 1.01608 0.80361 1.03190 0.90696 0.92332 0.88015 0.76416 0.91128 0.92361 0.90535 0.92876 0.90873 0.95654 0.93870 0.83554 0.81750 0.90945 0.89809 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.10 9.26 36.00 0.33 -0.76 16 2 C 0.10 1.38 6.89 -81.89 -0.56 0.81 16 3 C -0.23 -3.81 6.29 -103.35 -0.65 -4.46 16 4 C 0.59 11.26 7.81 -12.59 -0.10 11.16 16 5 O -0.56 -11.96 14.82 5.26 0.08 -11.88 16 6 N -0.71 -13.32 5.52 -61.43 -0.34 -13.65 16 7 C 0.13 2.43 5.54 -4.04 -0.02 2.41 16 8 C 0.13 2.52 4.33 -66.86 -0.29 2.23 16 9 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 10 C -0.16 -2.94 7.86 -25.80 -0.20 -3.15 16 11 C 0.16 3.73 7.52 -2.97 -0.02 3.70 16 12 N -0.60 -15.09 3.57 -170.71 -0.61 -15.70 16 13 C -0.21 -5.90 10.51 -15.06 -0.16 -6.06 16 14 H 0.08 2.17 7.80 -52.48 -0.41 1.76 16 15 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 16 N -0.92 -27.53 11.38 55.49 0.63 -26.90 16 17 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 C -0.16 -2.34 10.56 -37.50 -0.40 -2.73 16 22 C -0.02 -0.28 11.34 -16.82 -0.19 -0.47 16 23 N -0.45 -5.16 3.09 -119.88 -0.37 -5.53 16 24 C 0.07 0.46 10.60 59.85 0.63 1.10 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.52 7.59 -51.93 -0.39 0.13 16 27 H 0.10 1.44 6.47 -51.93 -0.34 1.10 16 28 H 0.40 7.23 7.60 -40.82 -0.31 6.92 16 29 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.91 7.15 -51.93 -0.37 1.54 16 34 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.15 1.97 7.70 -52.49 -0.40 1.57 16 37 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.48 7.51 -51.93 -0.39 0.09 16 40 H 0.08 0.42 8.13 -51.92 -0.42 0.00 16 LS Contribution 334.67 15.07 5.04 5.04 Total: -1.00 -34.27 334.67 -8.29 -42.56 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.97 Total: 5.04 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -1.72 Total: 3.43 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: -0.69 Total: -61.78 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.27 -8.29 -42.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038671931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.951 kcal (2) G-P(sol) polarization free energy of solvation -34.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds