Wall clock time and date at job start Mon Mar 30 2020 01:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36766 * 125.80488 * 2 1 4 4 C 1.47269 * 126.94018 * 359.97438 * 3 2 1 5 5 O 1.21620 * 119.99945 * 359.70590 * 4 3 2 6 6 N 1.34771 * 119.99688 * 179.71274 * 4 3 2 7 7 C 1.46505 * 119.99622 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 6 4 9 9 H 1.09002 * 112.96693 * 306.67860 * 8 7 6 10 10 C 1.53944 * 113.77224 * 175.00107 * 8 7 6 11 11 C 1.53950 * 86.29079 * 222.09231 * 10 8 7 12 12 N 1.47585 * 113.77049 * 78.49995 * 8 7 6 13 13 C 1.36932 * 134.49495 * 318.94949 * 12 8 7 14 14 H 1.08007 * 119.99670 * 359.97438 * 13 12 8 15 15 C 1.38814 * 120.00453 * 179.97438 * 13 12 8 16 16 N 1.31623 * 119.99581 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00371 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46974 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47039 * 119.99851 * 17 15 13 20 20 H 1.48494 * 109.47110 * 240.00230 * 17 15 13 21 21 C 1.46686 * 106.11926 * 179.71637 * 3 2 1 22 22 C 1.34495 * 106.33180 * 0.26102 * 21 3 2 23 23 N 1.34659 * 125.80151 * 180.16498 * 2 1 3 24 24 C 1.46501 * 124.84903 * 0.02562 * 23 2 1 25 25 H 1.09005 * 109.47207 * 89.99824 * 1 2 3 26 26 H 1.09004 * 109.47194 * 209.99890 * 1 2 3 27 27 H 1.09005 * 109.47189 * 329.99731 * 1 2 3 28 28 H 0.96996 * 120.00772 * 359.97438 * 6 4 3 29 29 H 1.09002 * 109.47068 * 299.99729 * 7 6 4 30 30 H 1.09001 * 109.47372 * 59.99816 * 7 6 4 31 31 H 1.09005 * 113.73705 * 336.43429 * 10 8 7 32 32 H 1.08994 * 113.74699 * 107.63859 * 10 8 7 33 33 H 1.08997 * 113.77044 * 137.90682 * 11 10 8 34 34 H 1.08997 * 113.76603 * 269.19409 * 11 10 8 35 35 H 0.97001 * 120.00214 * 180.02562 * 16 15 13 36 36 H 1.07999 * 126.84104 * 180.22772 * 21 3 2 37 37 H 1.07994 * 125.57139 * 180.02562 * 22 21 3 38 38 H 1.09004 * 109.47185 * 270.30635 * 24 23 2 39 39 H 1.08993 * 109.47775 * 30.30798 * 24 23 2 40 40 H 1.09012 * 109.47248 * 150.31391 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6840 2.7839 -0.0064 6 7 2.7850 3.5053 0.0054 7 6 2.3504 4.9044 0.0043 8 6 3.5766 5.8193 0.0125 9 1 4.2713 5.5923 0.8213 10 6 3.2354 7.3154 -0.1107 11 6 4.4269 7.4047 -1.0815 12 7 4.2223 5.9606 -1.3071 13 6 4.5141 5.0983 -2.3300 14 1 4.2517 4.0539 -2.2472 15 6 5.1470 5.5664 -3.4733 16 7 5.4663 6.8394 -3.5743 17 14 5.5457 4.3900 -4.8683 18 1 5.0861 3.0240 -4.5105 19 1 4.8548 4.8361 -6.1048 20 1 7.0126 4.3747 -5.0990 21 6 3.6882 0.6151 0.0070 22 6 3.6095 -0.7276 0.0047 23 7 2.2947 -1.0921 -0.0031 24 6 1.8093 -2.4744 -0.0077 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 3.7311 3.2914 0.0104 29 1 1.7568 5.0998 -0.8888 30 1 1.7470 5.0982 0.8912 31 1 2.2710 7.5083 -0.5807 32 1 3.3773 7.8755 0.8135 33 1 4.2322 8.0187 -1.9607 34 1 5.3724 7.6455 -0.5955 35 1 5.9083 7.1666 -4.3733 36 1 4.5890 1.2108 0.0123 37 1 4.4497 -1.4061 0.0088 38 1 1.6833 -2.8186 1.0189 39 1 0.8520 -2.5217 -0.5267 40 1 2.5315 -3.1115 -0.5184 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038671931.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:04 Heat of formation + Delta-G solvation = 41.640546 kcal Electronic energy + Delta-G solvation = -21502.956383 eV Core-core repulsion = 18319.436462 eV Total energy + Delta-G solvation = -3183.519921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.26070 -40.35493 -39.34272 -35.42767 -34.20130 -33.64460 -32.50601 -29.95774 -29.52432 -27.19937 -27.15288 -25.27376 -24.02903 -22.83370 -21.17668 -20.78024 -20.00379 -18.70053 -18.14429 -17.07520 -16.88361 -16.65228 -16.54162 -15.93965 -15.58078 -15.36214 -14.92571 -14.67374 -14.15402 -14.01980 -13.93758 -13.62481 -13.49740 -13.25962 -13.14340 -12.96318 -12.82189 -12.66009 -12.56353 -12.46050 -12.26444 -11.82006 -11.49674 -11.32582 -10.83722 -10.73066 -9.99044 -9.48299 -9.08978 -8.85879 -7.85118 -5.16154 0.77498 1.42625 1.44255 1.51577 1.53522 1.92064 2.44745 2.55233 2.64599 3.35942 3.41927 3.85656 3.94944 4.00174 4.05594 4.16470 4.25563 4.37830 4.42861 4.46057 4.66325 4.68120 4.73470 4.74182 4.74581 4.89969 4.99009 5.07136 5.07864 5.12363 5.28730 5.36702 5.57367 5.65558 5.77621 5.80095 6.00740 6.10727 6.39146 6.74559 6.98883 7.41098 7.67454 8.62417 9.31953 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017135 B = 0.005154 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.718672 B = 5431.386052 C = 6528.953898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.094 3.906 3 C -0.274 4.274 4 C 0.581 3.419 5 O -0.595 6.595 6 N -0.711 5.711 7 C 0.135 3.865 8 C 0.132 3.868 9 H 0.070 0.930 10 C -0.130 4.130 11 C 0.151 3.849 12 N -0.629 5.629 13 C -0.209 4.209 14 H 0.080 0.920 15 C -0.070 4.070 16 N -0.954 5.954 17 Si 0.965 3.035 18 H -0.270 1.270 19 H -0.298 1.298 20 H -0.291 1.291 21 C -0.191 4.191 22 C -0.007 4.007 23 N -0.442 5.442 24 C 0.059 3.941 25 H 0.075 0.925 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.404 0.596 29 H 0.039 0.961 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.039 0.961 34 H 0.023 0.977 35 H 0.245 0.755 36 H 0.146 0.854 37 H 0.204 0.796 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.035 -17.839 11.028 21.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.024 4.024 3 C -0.284 4.284 4 C 0.371 3.629 5 O -0.478 6.478 6 N -0.359 5.359 7 C 0.011 3.989 8 C 0.026 3.974 9 H 0.087 0.913 10 C -0.168 4.168 11 C 0.025 3.975 12 N -0.355 5.355 13 C -0.337 4.337 14 H 0.098 0.902 15 C -0.263 4.263 16 N -0.604 5.604 17 Si 0.795 3.205 18 H -0.194 1.194 19 H -0.225 1.225 20 H -0.218 1.218 21 C -0.214 4.214 22 C -0.133 4.133 23 N -0.118 5.118 24 C -0.081 4.081 25 H 0.094 0.906 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.239 0.761 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.057 0.943 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.163 0.837 37 H 0.220 0.780 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -6.824 -18.102 10.730 22.122 hybrid contribution 1.143 -0.088 -1.198 1.658 sum -5.682 -18.190 9.533 21.308 Atomic orbital electron populations 1.20497 0.86187 1.04303 1.03408 1.20525 0.94548 0.85563 1.01777 1.20275 0.95044 0.91508 1.21550 1.17790 0.84947 0.85236 0.74891 1.90641 1.17853 1.85265 1.54081 1.45715 1.09974 1.05926 1.74332 1.21498 0.96924 0.79944 1.00583 1.22676 0.92036 0.94498 0.88226 0.91296 1.23560 0.98869 0.94536 0.99849 1.22170 0.94253 0.85749 0.95291 1.46426 1.68953 1.06457 1.13705 1.19314 1.29967 0.90912 0.93549 0.90183 1.25471 1.02492 0.97682 1.00631 1.70005 1.47976 1.13990 1.28461 0.85187 0.77080 0.78700 0.79547 1.19440 1.22536 1.21779 1.22237 0.95236 0.95044 1.08928 1.22188 0.86374 0.95832 1.08932 1.43840 1.05674 1.07148 1.55145 1.22451 1.02838 0.77706 1.05056 0.90591 0.88719 0.90538 0.76114 0.94282 0.90395 0.90415 0.88647 0.94252 0.95899 0.94609 0.83652 0.77971 0.88990 0.88657 0.87400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.98 9.26 71.23 0.66 -1.32 16 2 C 0.09 2.55 6.89 41.78 0.29 2.84 16 3 C -0.27 -9.09 6.29 -19.04 -0.12 -9.21 16 4 C 0.58 22.68 7.81 86.62 0.68 23.36 16 5 O -0.59 -25.88 14.82 -4.09 -0.06 -25.94 16 6 N -0.71 -26.91 5.52 -466.52 -2.58 -29.49 16 7 C 0.14 5.21 5.54 86.38 0.48 5.69 16 8 C 0.13 5.14 4.33 45.09 0.20 5.34 16 9 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 10 C -0.13 -4.69 7.86 31.25 0.25 -4.44 16 11 C 0.15 7.14 7.52 86.48 0.65 7.79 16 12 N -0.63 -31.75 3.57 -694.01 -2.48 -34.23 16 13 C -0.21 -11.69 10.51 84.03 0.88 -10.81 16 14 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 15 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 16 N -0.95 -58.64 11.38 21.65 0.25 -58.40 16 17 Si 0.97 47.38 29.55 68.60 2.03 49.41 16 18 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 19 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 20 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 21 C -0.19 -5.33 10.56 23.62 0.25 -5.08 16 22 C -0.01 -0.14 11.34 83.12 0.94 0.80 16 23 N -0.44 -8.79 3.09 -533.19 -1.65 -10.44 16 24 C 0.06 0.53 10.60 127.77 1.35 1.88 16 25 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.09 1.41 7.59 -2.38 -0.02 1.39 16 27 H 0.08 2.17 6.47 -2.38 -0.02 2.16 16 28 H 0.40 14.68 7.60 -92.71 -0.70 13.98 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.08 2.81 8.10 -2.38 -0.02 2.79 16 32 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.04 2.12 7.15 -2.39 -0.02 2.10 16 34 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.24 14.70 8.31 -92.71 -0.77 13.93 16 36 H 0.15 3.89 7.70 -2.91 -0.02 3.86 16 37 H 0.20 2.53 8.06 -2.91 -0.02 2.50 16 38 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.09 0.68 7.51 -2.39 -0.02 0.66 16 40 H 0.11 0.52 8.13 -2.38 -0.02 0.50 16 Total: -1.00 -76.99 334.67 2.81 -74.18 By element: Atomic # 1 Polarization: 21.34 SS G_CDS: 0.33 Total: 21.68 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: 6.97 Total: 13.22 kcal Atomic # 7 Polarization: -126.09 SS G_CDS: -6.46 Total: -132.55 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.06 Total: -25.94 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -76.99 2.81 -74.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038671931.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.821 kcal (2) G-P(sol) polarization free energy of solvation -76.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds