Wall clock time and date at job start Mon Mar 30 2020 01:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34492 * 125.57051 * 2 1 4 4 C 1.46689 * 106.33039 * 180.08752 * 3 2 1 5 5 C 1.47254 * 126.94028 * 179.88725 * 4 3 2 6 6 O 1.21626 * 119.99952 * 179.68672 * 5 4 3 7 7 N 1.34780 * 120.00119 * 359.69051 * 5 4 3 8 8 C 1.46498 * 120.00281 * 179.71893 * 7 5 4 9 9 C 1.52991 * 109.47513 * 180.02562 * 8 7 5 10 10 H 1.09004 * 112.96340 * 53.32360 * 9 8 7 11 11 C 1.53949 * 113.77184 * 185.00178 * 9 8 7 12 12 C 1.53952 * 86.29039 * 137.90703 * 11 9 8 13 13 N 1.47582 * 86.11731 * 336.39508 * 12 11 9 14 14 C 1.36936 * 134.49135 * 204.63843 * 13 12 11 15 15 H 1.08003 * 119.99682 * 173.48675 * 14 13 12 16 16 C 1.38810 * 120.00281 * 353.48892 * 14 13 12 17 17 N 1.31616 * 119.99839 * 5.06582 * 16 14 13 18 18 Si 1.86796 * 120.00080 * 185.06918 * 16 14 13 19 19 H 1.48508 * 109.47249 * 94.98847 * 18 16 14 20 20 H 1.48504 * 109.47015 * 214.98332 * 18 16 14 21 21 H 1.48495 * 109.47262 * 334.98474 * 18 16 14 22 22 C 1.36772 * 106.11354 * 359.63005 * 4 3 2 23 23 C 1.50701 * 125.79501 * 180.19925 * 22 4 3 24 24 N 1.34653 * 108.39910 * 0.22410 * 22 4 3 25 25 H 0.97004 * 124.84973 * 180.02562 * 24 22 4 26 26 H 1.08997 * 109.47286 * 270.32963 * 1 2 3 27 27 H 1.09002 * 109.47153 * 30.33382 * 1 2 3 28 28 H 1.09008 * 109.47028 * 150.33233 * 1 2 3 29 29 H 1.08000 * 126.83183 * 359.97410 * 3 2 1 30 30 H 0.96994 * 119.99904 * 359.97438 * 7 5 4 31 31 H 1.09000 * 109.47047 * 300.00656 * 8 7 5 32 32 H 1.09010 * 109.46877 * 59.99979 * 8 7 5 33 33 H 1.08993 * 113.74332 * 252.25081 * 11 9 8 34 34 H 1.09000 * 113.73859 * 23.45644 * 11 9 8 35 35 H 1.09004 * 113.76408 * 90.69274 * 12 11 9 36 36 H 1.08992 * 113.77382 * 221.97810 * 12 11 9 37 37 H 0.97002 * 120.00231 * 180.02562 * 17 16 14 38 38 H 1.09003 * 109.46968 * 90.00859 * 23 22 4 39 39 H 1.09002 * 109.47119 * 209.99977 * 23 22 4 40 40 H 1.08997 * 109.47565 * 330.00494 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0940 0.0000 4 6 3.6743 0.6106 -0.0022 5 6 4.8977 1.4302 -0.0053 6 8 5.9892 0.8936 -0.0010 7 7 4.8079 2.7750 -0.0127 8 6 6.0250 3.5904 -0.0096 9 6 5.6459 5.0726 -0.0188 10 1 4.9551 5.3399 0.7809 11 6 6.8526 6.0210 -0.1392 12 6 5.9912 6.8300 -1.1259 13 7 5.2453 5.5759 -1.3471 14 6 4.4863 5.0789 -2.3728 15 1 4.1212 4.0632 -2.3314 16 6 4.1863 5.8802 -3.4658 17 7 4.7124 7.0826 -3.5643 18 14 3.0357 5.2522 -4.7966 19 1 1.6548 5.7237 -4.5201 20 1 3.4790 5.7664 -6.1173 21 1 3.0584 3.7675 -4.8104 22 6 3.5997 -0.7551 0.0052 23 6 4.7722 -1.7018 0.0104 24 7 2.3008 -1.1098 0.0064 25 1 1.9757 -2.0237 0.0116 26 1 -0.3634 0.0059 1.0276 27 1 -0.3633 0.8870 -0.5190 28 1 -0.3633 -0.8930 -0.5087 29 1 1.9628 2.1234 -0.0004 30 1 3.9375 3.2029 -0.0164 31 1 6.6075 3.3703 0.8850 32 1 6.6182 3.3612 -0.8949 33 1 7.0840 6.5558 0.7819 34 1 7.7290 5.5603 -0.5948 35 1 5.4008 7.6146 -0.6526 36 1 6.5373 7.1788 -2.0023 37 1 4.5025 7.6428 -4.3279 38 1 5.0547 -1.9247 1.0394 39 1 4.4958 -2.6253 -0.4984 40 1 5.6141 -1.2405 -0.5057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038762706.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:37 Heat of formation + Delta-G solvation = 26.930260 kcal Electronic energy + Delta-G solvation = -21486.383247 eV Core-core repulsion = 18302.225440 eV Total energy + Delta-G solvation = -3184.157807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.27061 -40.34731 -39.33742 -35.43767 -34.19560 -33.50345 -32.17037 -30.06936 -29.85978 -29.07686 -25.82855 -25.27067 -24.09818 -22.64603 -21.27799 -21.10139 -20.36536 -18.56167 -17.89566 -17.10766 -17.08176 -16.59911 -16.28287 -15.84372 -15.43938 -15.31382 -14.77563 -14.66111 -14.31645 -14.08878 -14.01452 -13.54755 -13.47587 -13.26735 -13.05137 -12.92728 -12.90463 -12.65425 -12.57187 -12.39642 -12.27433 -11.84284 -11.51059 -11.31283 -10.81822 -10.74499 -10.04682 -9.69211 -8.94757 -8.84732 -7.86761 -5.16902 0.76604 1.43085 1.43408 1.44334 1.53166 2.13067 2.46169 2.56223 2.62990 3.33306 3.43277 3.86440 3.95530 4.03203 4.11828 4.24890 4.29478 4.37843 4.50457 4.63828 4.68387 4.72709 4.74705 4.82133 4.89305 4.91692 5.07756 5.08942 5.12748 5.14869 5.34212 5.37391 5.57460 5.64675 5.76715 5.80769 5.99107 6.00224 6.63064 6.75173 6.98375 7.40146 7.66967 8.62856 9.30913 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015033 B = 0.005511 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.079348 B = 5079.785064 C = 6238.371336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.021 3.979 3 C -0.191 4.191 4 C -0.268 4.268 5 C 0.580 3.420 6 O -0.593 6.593 7 N -0.711 5.711 8 C 0.135 3.865 9 C 0.131 3.869 10 H 0.069 0.931 11 C -0.130 4.130 12 C 0.154 3.846 13 N -0.629 5.629 14 C -0.212 4.212 15 H 0.080 0.920 16 C -0.069 4.069 17 N -0.953 5.953 18 Si 0.965 3.035 19 H -0.285 1.285 20 H -0.298 1.298 21 H -0.275 1.275 22 C 0.103 3.897 23 C -0.088 4.088 24 N -0.534 5.534 25 H 0.432 0.568 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.143 0.857 30 H 0.404 0.596 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.023 0.977 36 H 0.035 0.965 37 H 0.246 0.754 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.840 -16.131 11.009 20.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.089 4.089 3 C -0.215 4.215 4 C -0.278 4.278 5 C 0.371 3.629 6 O -0.477 6.477 7 N -0.359 5.359 8 C 0.010 3.990 9 C 0.025 3.975 10 H 0.086 0.914 11 C -0.168 4.168 12 C 0.029 3.971 13 N -0.355 5.355 14 C -0.341 4.341 15 H 0.097 0.903 16 C -0.261 4.261 17 N -0.602 5.602 18 Si 0.794 3.206 19 H -0.212 1.212 20 H -0.225 1.225 21 H -0.200 1.200 22 C -0.017 4.017 23 C -0.146 4.146 24 N -0.132 5.132 25 H 0.272 0.728 26 H 0.106 0.894 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.161 0.839 30 H 0.239 0.761 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.041 0.959 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.307 -16.596 10.715 20.737 hybrid contribution -1.016 0.236 -1.148 1.551 sum -7.323 -16.360 9.567 20.318 Atomic orbital electron populations 1.20440 0.84961 1.04484 1.03973 1.20661 0.94962 0.85299 1.07989 1.21999 0.90659 0.98921 1.09897 1.20241 0.92977 0.93462 1.21112 1.17782 0.88203 0.81994 0.74957 1.90648 1.29974 1.73036 1.54002 1.45723 1.10316 1.05634 1.74268 1.21502 0.86769 0.90059 1.00635 1.22671 0.94988 0.91747 0.88078 0.91407 1.23574 0.96301 0.97165 0.99787 1.22106 0.90777 0.89159 0.95096 1.46396 1.59231 1.17241 1.12643 1.19269 1.22799 0.95955 0.96034 0.90256 1.25509 1.02738 0.96723 1.01176 1.70009 1.48301 1.10606 1.31312 0.85249 0.79133 0.77554 0.78650 1.21153 1.22482 1.20000 1.20481 0.86281 0.93758 1.01141 1.20532 0.93213 0.96893 1.03936 1.41452 1.04230 1.09603 1.57934 0.72807 0.89443 0.89866 0.89709 0.83889 0.76110 0.90354 0.94213 0.88681 0.90287 0.95911 0.94640 0.94536 0.89592 0.88844 0.90852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.41 71.24 0.74 -0.30 16 2 C 0.02 0.43 7.13 40.98 0.29 0.72 16 3 C -0.19 -5.35 10.45 23.62 0.25 -5.11 16 4 C -0.27 -8.72 6.29 -19.04 -0.12 -8.84 16 5 C 0.58 22.33 7.81 86.61 0.68 23.01 16 6 O -0.59 -25.39 14.81 -4.11 -0.06 -25.45 16 7 N -0.71 -26.66 5.51 -466.53 -2.57 -29.23 16 8 C 0.14 5.15 5.54 86.38 0.48 5.63 16 9 C 0.13 5.10 4.33 45.09 0.20 5.30 16 10 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 11 C -0.13 -4.65 7.86 31.26 0.25 -4.41 16 12 C 0.15 7.27 7.42 86.48 0.64 7.91 16 13 N -0.63 -31.63 3.57 -694.04 -2.48 -34.11 16 14 C -0.21 -11.84 10.50 84.03 0.88 -10.96 16 15 H 0.08 4.35 7.79 -2.91 -0.02 4.33 16 16 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 17 N -0.95 -58.36 11.51 21.65 0.25 -58.11 16 18 Si 0.96 47.05 29.56 68.60 2.03 49.08 16 19 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 21 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 22 C 0.10 2.65 7.17 41.78 0.30 2.95 16 23 C -0.09 -1.93 9.88 71.24 0.70 -1.22 16 24 N -0.53 -9.98 5.90 -171.07 -1.01 -10.99 16 25 H 0.43 4.46 8.96 -92.71 -0.83 3.63 16 26 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 28 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.14 3.90 7.70 -2.91 -0.02 3.87 16 30 H 0.40 14.63 7.60 -92.71 -0.70 13.92 16 31 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 32 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 33 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.08 2.82 8.10 -2.39 -0.02 2.80 16 35 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.04 1.89 7.36 -2.39 -0.02 1.88 16 37 H 0.25 14.71 8.31 -92.71 -0.77 13.93 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.07 2.09 6.47 -2.39 -0.02 2.08 16 Total: -1.00 -75.45 336.18 1.43 -74.02 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -0.48 Total: 23.62 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 5.75 Total: 11.17 kcal Atomic # 7 Polarization: -126.63 SS G_CDS: -5.81 Total: -132.44 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.06 Total: -25.45 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -75.45 1.43 -74.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038762706.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.951 kcal (2) G-P(sol) polarization free energy of solvation -75.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds