Wall clock time and date at job start Mon Mar 30 2020 01:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35456 * 125.56386 * 2 1 4 4 C 1.39841 * 107.86280 * 180.02562 * 3 2 1 5 5 C 1.37868 * 107.08508 * 0.02562 * 4 3 2 6 6 C 1.46682 * 126.23081 * 180.02562 * 5 4 3 7 7 O 1.21699 * 119.99752 * 187.80625 * 6 5 4 8 8 N 1.34777 * 120.00220 * 7.80748 * 6 5 4 9 9 C 1.46502 * 119.99650 * 6.56730 * 8 6 5 10 10 C 1.46497 * 120.00206 * 186.56335 * 8 6 5 11 11 C 1.53496 * 114.20429 * 120.00036 * 10 8 6 12 12 N 1.47062 * 87.98682 * 87.71641 * 11 10 8 13 13 C 1.36939 * 136.05976 * 207.08049 * 12 11 10 14 14 H 1.07989 * 119.99984 * 354.77671 * 13 12 11 15 15 C 1.38818 * 119.99771 * 174.77593 * 13 12 11 16 16 N 1.31617 * 119.99630 * 181.93211 * 15 13 12 17 17 Si 1.86797 * 119.99931 * 1.93027 * 15 13 12 18 18 H 1.48506 * 109.46843 * 174.14468 * 17 15 13 19 19 H 1.48500 * 109.47329 * 294.14126 * 17 15 13 20 20 H 1.48500 * 109.47442 * 54.14585 * 17 15 13 21 21 C 1.47074 * 87.88385 * 27.34155 * 12 11 10 22 22 N 1.35534 * 125.56625 * 180.34777 * 2 1 3 23 23 C 1.46501 * 125.67524 * 0.02562 * 22 2 1 24 24 H 1.09004 * 109.46956 * 89.97696 * 1 2 3 25 25 H 1.08998 * 109.47402 * 209.98085 * 1 2 3 26 26 H 1.09001 * 109.47648 * 329.98142 * 1 2 3 27 27 H 1.07994 * 126.06536 * 0.06397 * 3 2 1 28 28 H 1.08003 * 126.45322 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47338 * 276.04143 * 9 8 6 30 30 H 1.08999 * 109.47149 * 36.03952 * 9 8 6 31 31 H 1.09004 * 109.46924 * 156.04735 * 9 8 6 32 32 H 1.09001 * 113.28002 * 346.93598 * 10 8 6 33 33 H 1.09000 * 113.46954 * 332.93936 * 11 10 8 34 34 H 1.08999 * 113.46940 * 202.50128 * 11 10 8 35 35 H 0.96995 * 120.00391 * 5.02488 * 16 15 13 36 36 H 1.09001 * 113.46441 * 87.43320 * 21 12 11 37 37 H 1.08998 * 113.46977 * 217.87783 * 21 12 11 38 38 H 1.08997 * 109.47308 * 273.80499 * 23 22 2 39 39 H 1.09000 * 109.47368 * 33.80741 * 23 22 2 40 40 H 1.09001 * 109.47324 * 153.80694 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2947 1.1019 0.0000 4 6 3.6269 0.6767 -0.0006 5 6 3.6121 -0.7019 -0.0015 6 6 4.7859 -1.5815 -0.0019 7 8 4.6467 -2.7819 -0.1459 8 7 6.0186 -1.0604 0.1573 9 6 6.1776 0.3612 0.4739 10 6 7.1995 -1.9154 0.0139 11 6 8.1638 -1.4756 -1.0964 12 7 8.8211 -0.6056 -0.1096 13 6 9.5385 0.5602 -0.1458 14 1 9.7998 1.0042 -1.0949 15 6 9.9297 1.1714 1.0376 16 7 10.5862 2.3117 1.0036 17 14 9.5244 0.3755 2.6783 18 1 10.1685 1.1440 3.7737 19 1 8.0527 0.3707 2.8760 20 1 10.0300 -1.0207 2.6895 21 6 8.3745 -1.5423 0.9327 22 7 2.2952 -1.1025 -0.0067 23 6 1.8241 -2.4896 -0.0156 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3634 -0.8901 0.5135 26 1 -0.3634 0.8898 0.5141 27 1 1.9544 2.1268 0.0010 28 1 4.5024 1.3092 -0.0004 29 1 6.1462 0.9441 -0.4466 30 1 5.3698 0.6792 1.1330 31 1 7.1351 0.5179 0.9706 32 1 6.9625 -2.9793 0.0045 33 1 7.6766 -0.9269 -1.9024 34 1 8.8032 -2.2801 -1.4600 35 1 10.7330 2.7617 0.1570 36 1 9.0694 -2.3644 1.1040 37 1 8.0667 -1.0505 1.8554 38 1 1.6423 -2.8182 1.0076 39 1 0.8989 -2.5555 -0.5882 40 1 2.5806 -3.1274 -0.4730 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042473531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:37 Heat of formation + Delta-G solvation = 108.701709 kcal Electronic energy + Delta-G solvation = -22251.857406 eV Core-core repulsion = 19071.245476 eV Total energy + Delta-G solvation = -3180.611931 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.49970 -39.71310 -37.78660 -34.65301 -32.72623 -32.33792 -31.62077 -28.50260 -27.02381 -26.53003 -26.05361 -25.35195 -22.93074 -21.25438 -20.56786 -19.10466 -18.69753 -17.53724 -16.74985 -16.42442 -15.78183 -15.57201 -14.82691 -14.63643 -14.19890 -13.75979 -13.61385 -13.40476 -13.31728 -13.13611 -12.95012 -12.70896 -12.65355 -12.19334 -12.00927 -11.95394 -11.71643 -11.35207 -10.92563 -10.85495 -10.52459 -10.38833 -9.66312 -9.26530 -9.15388 -8.99317 -8.67266 -8.24126 -7.94014 -7.19119 -6.34262 -3.27785 1.56422 2.63734 2.74471 3.32481 3.39394 3.46724 3.53731 3.60353 4.52708 4.63161 4.70616 4.76713 4.85269 5.01137 5.13548 5.15302 5.32006 5.37414 5.44696 5.52307 5.58632 5.65255 5.74042 5.80739 5.88827 6.06714 6.15219 6.18264 6.18949 6.23507 6.36139 6.39873 6.67062 6.81612 7.02950 7.04755 7.08722 7.25188 7.75191 8.19773 8.39971 8.93516 9.44723 10.30945 11.17134 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025950 B = 0.005190 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.745384 B = 5393.295040 C = 5885.371455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.034 3.966 3 C -0.209 4.209 4 C -0.150 4.150 5 C -0.047 4.047 6 C 0.587 3.413 7 O -0.565 6.565 8 N -0.566 5.566 9 C 0.063 3.937 10 C 0.100 3.900 11 C 0.111 3.889 12 N -0.625 5.625 13 C -0.300 4.300 14 H 0.082 0.918 15 C -0.022 4.022 16 N -0.934 5.934 17 Si 1.066 2.934 18 H -0.295 1.295 19 H -0.290 1.290 20 H -0.290 1.290 21 C 0.083 3.917 22 N -0.410 5.410 23 C 0.063 3.937 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.140 0.860 28 H 0.166 0.834 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.262 0.738 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.287 -6.183 -1.203 20.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.233 4.233 4 C -0.176 4.176 5 C -0.160 4.160 6 C 0.378 3.622 7 O -0.447 6.447 8 N -0.295 5.295 9 C -0.079 4.079 10 C -0.005 4.005 11 C -0.017 4.017 12 N -0.354 5.354 13 C -0.426 4.426 14 H 0.100 0.900 15 C -0.221 4.221 16 N -0.576 5.576 17 Si 0.900 3.100 18 H -0.223 1.223 19 H -0.218 1.218 20 H -0.217 1.217 21 C -0.043 4.043 22 N -0.084 5.084 23 C -0.079 4.079 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.158 0.842 28 H 0.183 0.817 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.059 -6.794 0.345 20.237 hybrid contribution -0.004 -0.122 -1.743 1.747 sum -19.063 -6.916 -1.399 20.327 Atomic orbital electron populations 1.20346 0.88022 1.03244 1.02612 1.20531 0.93586 0.86019 1.08112 1.20689 0.92710 0.97628 1.12277 1.22344 0.98574 0.92651 1.04016 1.19969 0.84040 0.93709 1.18274 1.16973 0.82126 0.86428 0.76705 1.90691 1.85982 1.15116 1.52883 1.46966 1.03986 1.10746 1.67775 1.22615 1.04834 0.79410 1.01034 1.22512 0.84522 0.94171 0.99286 1.22781 0.91856 0.93372 0.93694 1.46254 1.64947 1.21735 1.02493 1.20148 1.31355 0.95569 0.95553 0.89984 1.25613 0.98150 0.97389 1.00975 1.70902 1.41645 1.16392 1.28691 0.83807 0.75102 0.74699 0.76366 1.22252 1.21843 1.21692 1.23246 0.92735 0.93619 0.94662 1.43701 1.04606 1.06388 1.53744 1.22266 1.01975 0.80272 1.03352 0.90976 0.91831 0.89950 0.84175 0.81692 0.92060 0.90964 0.87836 0.87439 0.93239 0.93285 0.92817 0.92547 0.92541 0.91037 0.90406 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 9.88 36.00 0.36 -0.30 16 2 C 0.03 0.41 6.87 -81.95 -0.56 -0.15 16 3 C -0.21 -2.68 10.71 -39.98 -0.43 -3.11 16 4 C -0.15 -2.23 8.74 -39.12 -0.34 -2.57 16 5 C -0.05 -0.76 6.71 -81.98 -0.55 -1.31 16 6 C 0.59 10.63 7.62 -12.85 -0.10 10.53 16 7 O -0.56 -10.88 14.09 5.19 0.07 -10.81 16 8 N -0.57 -10.48 3.12 -175.10 -0.55 -11.02 16 9 C 0.06 1.15 7.85 59.85 0.47 1.62 16 10 C 0.10 1.88 4.70 -67.68 -0.32 1.56 16 11 C 0.11 2.19 8.31 -8.51 -0.07 2.12 16 12 N -0.63 -14.71 2.40 -184.62 -0.44 -15.15 16 13 C -0.30 -8.23 10.54 -15.06 -0.16 -8.39 16 14 H 0.08 2.41 8.05 -52.49 -0.42 1.98 16 15 C -0.02 -0.64 5.47 -17.43 -0.10 -0.73 16 16 N -0.93 -28.54 13.70 55.49 0.76 -27.78 16 17 Si 1.07 26.00 24.01 -169.99 -4.08 21.92 16 18 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 19 H -0.29 -6.52 5.88 56.52 0.33 -6.19 16 20 H -0.29 -6.72 6.55 56.52 0.37 -6.35 16 21 C 0.08 1.74 5.00 -8.37 -0.04 1.70 16 22 N -0.41 -5.65 3.16 -115.62 -0.37 -6.01 16 23 C 0.06 0.69 10.29 59.85 0.62 1.30 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.42 7.75 -51.93 -0.40 0.02 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.17 2.37 4.42 -52.48 -0.23 2.14 16 29 H 0.06 1.09 7.26 -51.93 -0.38 0.71 16 30 H 0.07 1.18 5.45 -51.93 -0.28 0.89 16 31 H 0.10 2.23 3.28 -51.93 -0.17 2.06 16 32 H 0.11 1.89 7.26 -51.93 -0.38 1.52 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.26 7.92 8.73 -40.82 -0.36 7.56 16 36 H 0.06 1.12 8.07 -51.93 -0.42 0.71 16 37 H 0.06 1.23 3.44 -51.93 -0.18 1.05 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.62 7.78 -51.93 -0.40 0.22 16 40 H 0.11 1.41 6.00 -51.93 -0.31 1.10 16 LS Contribution 308.94 15.07 4.66 4.66 Total: -1.00 -32.43 308.94 -6.54 -38.97 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -5.37 Total: 2.98 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.22 Total: 2.26 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.59 Total: -59.97 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.07 Total: -10.81 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -4.08 Total: 21.92 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -32.43 -6.54 -38.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042473531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.671 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds